Wall clock time and date at job start Tue Mar 31 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39721 * 119.59187 * 328.47351 * 3 2 1 5 5 C 1.37976 * 119.20281 * 179.97438 * 4 3 2 6 6 C 1.40233 * 118.39742 * 0.02562 * 5 4 3 7 7 C 1.47677 * 120.44180 * 180.02562 * 6 5 4 8 8 O 1.21571 * 119.99760 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.36940 * 119.99699 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00008 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47212 * 120.00446 * 20 18 16 23 23 H 1.48501 * 109.46932 * 239.99751 * 20 18 16 24 24 C 1.39665 * 119.11921 * 0.27141 * 6 5 4 25 25 N 1.31482 * 120.71016 * 359.40485 * 24 6 5 26 26 H 4.51262 * 14.17660 * 359.97438 * 4 2 1 27 27 H 1.08007 * 120.40108 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.80271 * 180.02562 * 5 4 3 29 29 H 0.96999 * 119.99691 * 0.02562 * 9 7 6 30 30 H 1.09005 * 109.47040 * 60.00167 * 10 9 7 31 31 H 1.08999 * 109.47079 * 299.99869 * 10 9 7 32 32 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 33 33 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 34 34 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 35 35 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 36 36 H 0.97001 * 119.99921 * 180.02562 * 19 18 16 37 37 H 1.08000 * 119.64128 * 179.70859 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.2965 -1.0347 0.6353 5 6 4.6762 -1.0264 0.6299 6 6 5.3343 0.0293 -0.0174 7 6 6.8097 0.0828 -0.0512 8 8 7.4621 -0.7918 0.4849 9 7 7.4330 1.1018 -0.6754 10 6 8.8966 1.1551 -0.7084 11 6 9.3444 2.4023 -1.4732 12 1 8.8870 2.4057 -2.4625 13 8 8.9396 3.5709 -0.7572 14 6 10.8678 2.3937 -1.6157 15 7 11.2965 3.5882 -2.3474 16 6 12.6265 3.7973 -2.5975 17 1 13.3594 3.0813 -2.2557 18 6 13.0328 4.9289 -3.2913 19 7 12.1396 5.8006 -3.7092 20 14 14.8470 5.2136 -3.6332 21 1 15.6397 4.0942 -3.0642 22 1 15.0697 5.2819 -5.0999 23 1 15.2739 6.4911 -3.0079 24 6 4.5758 1.0321 -0.6254 25 7 3.2619 0.9862 -0.6045 26 1 -1.0500 -0.0006 0.0009 27 1 2.7567 -1.8324 1.1240 28 1 5.2359 -1.8138 1.1126 29 1 6.9124 1.8002 -1.1022 30 1 9.2814 0.2657 -1.2074 31 1 9.2817 1.1955 0.3105 32 1 9.3099 3.6343 0.1338 33 1 11.3252 2.3904 -0.6263 34 1 11.1766 1.5023 -2.1617 35 1 10.6383 4.2307 -2.6553 36 1 12.4235 6.5912 -4.1944 37 1 5.0739 1.8515 -1.1222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497092990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:21 Heat of formation + Delta-G solvation = 19.257754 kcal Electronic energy + Delta-G solvation = -20997.491802 eV Core-core repulsion = 17548.942056 eV Total energy + Delta-G solvation = -3448.549747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.00154 -39.41665 -37.65899 -34.68327 -34.31645 -34.03216 -32.96440 -31.57919 -31.09517 -29.07295 -26.12932 -24.73487 -24.03192 -22.63493 -21.53506 -20.90976 -19.80898 -18.36619 -17.29159 -17.14356 -16.48902 -16.11592 -16.05919 -15.49808 -15.12596 -14.89213 -14.49887 -14.32919 -13.99298 -13.73916 -13.51949 -13.07769 -12.96814 -12.74675 -12.38932 -11.92705 -11.70087 -11.34306 -10.98177 -10.85416 -10.68947 -10.53589 -10.40909 -10.15858 -9.92735 -9.83235 -9.55245 -9.42039 -9.17310 -8.93281 -6.96424 -5.78430 -3.08321 -0.10630 0.74620 2.10427 2.15072 2.85921 2.89105 3.40685 3.42037 3.47584 3.49974 3.58163 4.10666 4.29666 4.41333 4.50579 4.57895 4.63885 4.68411 4.80785 5.05683 5.18033 5.24308 5.52663 5.55186 5.56605 5.58321 5.73335 5.89201 6.01766 6.13609 6.24577 6.46949 6.62925 6.94705 7.24153 7.32302 7.66870 7.88051 7.94678 8.39683 9.51532 10.07768 10.43516 11.43878 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038024 B = 0.002377 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.197373 B =11775.201394 C =12381.672968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C 0.247 3.753 4 C -0.153 4.153 5 C -0.014 4.014 6 C -0.180 4.180 7 C 0.561 3.439 8 O -0.536 6.536 9 N -0.713 5.713 10 C 0.089 3.911 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.552 6.552 14 C 0.127 3.873 15 N -0.726 5.726 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.144 3.856 25 N -0.471 5.471 26 H 0.231 0.769 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.405 0.595 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.374 0.626 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.389 0.611 36 H 0.255 0.745 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.399 -13.676 9.296 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.112 3.888 4 C -0.173 4.173 5 C -0.040 4.040 6 C -0.185 4.185 7 C 0.347 3.653 8 O -0.414 6.414 9 N -0.365 5.365 10 C -0.035 4.035 11 C 0.028 3.972 12 H 0.123 0.877 13 O -0.357 6.357 14 C -0.002 4.002 15 N -0.371 5.371 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.016 4.016 25 N -0.179 5.179 26 H 0.248 0.752 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.241 0.759 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.224 0.776 36 H 0.065 0.935 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.483 -13.532 8.700 26.839 hybrid contribution 1.226 -0.008 0.323 1.268 sum -20.257 -13.540 9.022 25.983 Atomic orbital electron populations 1.24999 0.95659 0.97452 0.96665 1.19270 0.91033 1.02391 1.02788 1.16763 0.88254 0.90637 0.93163 1.22041 0.94392 0.99703 1.01179 1.21689 0.93550 0.96163 0.92586 1.21157 0.94784 0.98625 1.03897 1.17936 0.86566 0.82014 0.78833 1.90799 1.66784 1.38288 1.45485 1.45855 1.08198 1.26018 1.56379 1.22194 0.78960 1.00239 1.02076 1.22408 0.96407 0.82969 0.95412 0.87673 1.86580 1.73799 1.43395 1.31904 1.21187 0.90482 0.92291 0.96238 1.42232 1.05818 1.22760 1.66254 1.19262 0.83965 1.04609 1.29677 0.91136 1.24771 0.97689 0.97349 1.01091 1.69687 1.32002 1.12854 1.43181 0.86106 0.84756 0.77620 0.77612 1.20543 1.21825 1.21812 1.23033 0.88728 0.96267 0.93538 1.67771 1.09704 1.23793 1.16619 0.75195 0.83495 0.82751 0.75905 0.90047 0.90666 0.77837 0.95889 0.95327 0.77623 0.93496 0.81490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 19.25 29.55 0.57 -0.24 16 2 C -0.15 -1.39 13.43 -38.83 -0.52 -1.91 16 3 C 0.25 2.47 6.59 -84.91 -0.56 1.91 16 4 C -0.15 -1.23 9.77 -39.12 -0.38 -1.61 16 5 C -0.01 -0.12 9.70 -38.93 -0.38 -0.50 16 6 C -0.18 -1.82 5.89 -104.76 -0.62 -2.43 16 7 C 0.56 6.74 7.77 -12.40 -0.10 6.64 16 8 O -0.54 -8.12 16.41 5.30 0.09 -8.04 16 9 N -0.71 -7.76 5.46 -61.30 -0.33 -8.09 16 10 C 0.09 1.09 5.31 -4.04 -0.02 1.07 16 11 C 0.09 1.27 3.09 -26.73 -0.08 1.19 16 12 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 13 O -0.55 -8.33 13.03 -35.23 -0.46 -8.79 16 14 C 0.13 2.37 5.92 -4.04 -0.02 2.35 16 15 N -0.73 -18.04 5.49 -59.91 -0.33 -18.37 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.14 1.40 10.70 -17.17 -0.18 1.21 16 25 N -0.47 -5.25 10.26 -10.78 -0.11 -5.36 16 26 H 0.23 0.43 7.80 -54.09 -0.42 0.01 16 27 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.15 1.22 7.73 -52.49 -0.41 0.82 16 29 H 0.40 3.73 6.52 -40.82 -0.27 3.47 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.37 4.72 9.05 45.56 0.41 5.13 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.39 10.38 7.54 -40.82 -0.31 10.07 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.17 1.25 6.40 -52.49 -0.34 0.91 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -35.25 337.46 -6.31 -41.56 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -3.41 Total: 11.86 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.54 Total: 0.28 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.05 Total: -59.28 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.37 Total: -16.83 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.25 -6.31 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497092990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.823 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds