Wall clock time and date at job start Tue Mar 31 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39721 * 119.59187 * 328.47351 * 3 2 1 5 5 C 1.37976 * 119.20281 * 179.97438 * 4 3 2 6 6 C 1.40233 * 118.39742 * 0.02562 * 5 4 3 7 7 C 1.47677 * 120.44180 * 180.02562 * 6 5 4 8 8 O 1.21571 * 119.99760 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.36940 * 119.99699 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00008 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47212 * 120.00446 * 20 18 16 23 23 H 1.48501 * 109.46932 * 239.99751 * 20 18 16 24 24 C 1.39665 * 119.11921 * 0.27141 * 6 5 4 25 25 N 1.31482 * 120.71016 * 359.40485 * 24 6 5 26 26 H 4.51262 * 14.17660 * 359.97438 * 4 2 1 27 27 H 1.08007 * 120.40108 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.80271 * 180.02562 * 5 4 3 29 29 H 0.96999 * 119.99691 * 0.02562 * 9 7 6 30 30 H 1.09005 * 109.47040 * 60.00167 * 10 9 7 31 31 H 1.08999 * 109.47079 * 299.99869 * 10 9 7 32 32 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 33 33 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 34 34 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 35 35 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 36 36 H 0.97001 * 119.99921 * 180.02562 * 19 18 16 37 37 H 1.08000 * 119.64128 * 179.70859 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.2965 -1.0347 0.6353 5 6 4.6762 -1.0264 0.6299 6 6 5.3343 0.0293 -0.0174 7 6 6.8097 0.0828 -0.0512 8 8 7.4621 -0.7918 0.4849 9 7 7.4330 1.1018 -0.6754 10 6 8.8966 1.1551 -0.7084 11 6 9.3444 2.4023 -1.4732 12 1 8.8870 2.4057 -2.4625 13 8 8.9396 3.5709 -0.7572 14 6 10.8678 2.3937 -1.6157 15 7 11.2965 3.5882 -2.3474 16 6 12.6265 3.7973 -2.5975 17 1 13.3594 3.0813 -2.2557 18 6 13.0328 4.9289 -3.2913 19 7 12.1396 5.8006 -3.7092 20 14 14.8470 5.2136 -3.6332 21 1 15.6397 4.0942 -3.0642 22 1 15.0697 5.2819 -5.0999 23 1 15.2739 6.4911 -3.0079 24 6 4.5758 1.0321 -0.6254 25 7 3.2619 0.9862 -0.6045 26 1 -1.0500 -0.0006 0.0009 27 1 2.7567 -1.8324 1.1240 28 1 5.2359 -1.8138 1.1126 29 1 6.9124 1.8002 -1.1022 30 1 9.2814 0.2657 -1.2074 31 1 9.2817 1.1955 0.3105 32 1 9.3099 3.6343 0.1338 33 1 11.3252 2.3904 -0.6263 34 1 11.1766 1.5023 -2.1617 35 1 10.6383 4.2307 -2.6553 36 1 12.4235 6.5912 -4.1944 37 1 5.0739 1.8515 -1.1222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497092990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:20 Heat of formation + Delta-G solvation = -9.178803 kcal Electronic energy + Delta-G solvation = -20998.724904 eV Core-core repulsion = 17548.942056 eV Total energy + Delta-G solvation = -3449.782848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78148 -40.33322 -38.90217 -36.10255 -35.49717 -34.92621 -33.67389 -33.20531 -32.07610 -30.41722 -27.43064 -25.91180 -24.78196 -24.22486 -22.77342 -21.91041 -20.41095 -19.42088 -19.02884 -18.12086 -17.43970 -17.19517 -16.86726 -16.43503 -16.43098 -16.09311 -15.75798 -15.41552 -15.17515 -14.91393 -14.64659 -14.28592 -14.16250 -13.87011 -13.70000 -13.26512 -12.95082 -12.78683 -12.33873 -12.11928 -11.96485 -11.91767 -11.80368 -11.47945 -11.11777 -11.01203 -10.92381 -10.64641 -10.30869 -9.92590 -9.00434 -7.94869 -5.24113 -0.81504 0.07357 1.37408 1.48110 1.48674 1.58846 1.60575 1.93206 2.12398 2.56014 2.86016 2.89155 3.36275 3.43090 3.46218 3.59107 3.61621 3.71586 3.91059 4.02152 4.04402 4.20954 4.40640 4.48860 4.62197 4.64084 4.74103 4.91066 4.95008 5.01579 5.19237 5.26197 5.39665 5.49072 6.26563 6.35004 6.43317 6.62943 6.80492 7.01667 7.33853 8.09740 8.32395 9.28501 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038024 B = 0.002377 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.197373 B =11775.201394 C =12381.672968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.219 4.219 3 C 0.236 3.764 4 C -0.147 4.147 5 C -0.014 4.014 6 C -0.192 4.192 7 C 0.565 3.435 8 O -0.570 6.570 9 N -0.705 5.705 10 C 0.102 3.898 11 C 0.106 3.894 12 H 0.103 0.897 13 O -0.563 6.563 14 C 0.121 3.879 15 N -0.740 5.740 16 C -0.246 4.246 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.968 5.968 20 Si 0.974 3.026 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.145 3.855 25 N -0.500 5.500 26 H 0.272 0.728 27 H 0.175 0.825 28 H 0.163 0.837 29 H 0.414 0.586 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.385 0.615 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.578 -14.782 10.006 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.220 4.220 3 C 0.102 3.898 4 C -0.166 4.166 5 C -0.040 4.040 6 C -0.197 4.197 7 C 0.352 3.648 8 O -0.451 6.451 9 N -0.356 5.356 10 C -0.023 4.023 11 C 0.046 3.954 12 H 0.121 0.879 13 O -0.370 6.370 14 C -0.006 4.006 15 N -0.383 5.383 16 C -0.378 4.378 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.015 4.015 25 N -0.208 5.208 26 H 0.288 0.712 27 H 0.192 0.808 28 H 0.181 0.819 29 H 0.251 0.749 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.671 -14.667 9.434 28.602 hybrid contribution 1.429 0.274 0.152 1.463 sum -21.242 -14.393 9.586 27.391 Atomic orbital electron populations 1.26008 0.96350 0.94451 0.93497 1.19649 0.91621 1.05160 1.05539 1.17152 0.89240 0.90656 0.92731 1.22281 0.93974 0.99824 1.00526 1.21877 0.94070 0.95932 0.92112 1.21031 0.93564 0.99722 1.05425 1.18136 0.87205 0.81406 0.78028 1.90779 1.67615 1.39568 1.47137 1.45737 1.07698 1.26117 1.56090 1.21945 0.79744 0.98776 1.01802 1.22122 0.93525 0.83882 0.95829 0.87908 1.86562 1.73828 1.43768 1.32802 1.21408 0.93484 0.90040 0.95673 1.42417 1.04720 1.24277 1.66885 1.19687 0.85481 1.04285 1.28360 0.90491 1.25601 1.01854 0.97597 1.01892 1.69841 1.33912 1.13426 1.44661 0.85061 0.80033 0.77554 0.77011 1.18958 1.22091 1.22081 1.23232 0.88520 0.96483 0.93249 1.67792 1.10211 1.24939 1.17883 0.71216 0.80778 0.81948 0.74851 0.89990 0.90299 0.76561 0.95014 0.94729 0.79051 0.94020 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 19.25 74.32 1.43 0.61 16 2 C -0.22 -3.68 13.43 30.02 0.40 -3.27 16 3 C 0.24 4.61 6.59 40.58 0.27 4.88 16 4 C -0.15 -2.20 9.77 22.57 0.22 -1.98 16 5 C -0.01 -0.24 9.70 22.69 0.22 -0.02 16 6 C -0.19 -3.81 5.89 -19.95 -0.12 -3.93 16 7 C 0.57 13.26 7.77 86.74 0.67 13.94 16 8 O -0.57 -17.07 16.41 -3.94 -0.06 -17.13 16 9 N -0.70 -14.69 5.46 -466.13 -2.54 -17.23 16 10 C 0.10 2.36 5.31 86.38 0.46 2.82 16 11 C 0.11 2.98 3.09 30.60 0.09 3.08 16 12 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 13 O -0.56 -16.50 13.03 -148.98 -1.94 -18.44 16 14 C 0.12 4.43 5.92 86.38 0.51 4.95 16 15 N -0.74 -36.72 5.49 -343.46 -1.89 -38.61 16 16 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 17 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 20 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C 0.14 2.76 10.70 85.09 0.91 3.67 16 25 N -0.50 -11.05 10.26 -188.03 -1.93 -12.98 16 26 H 0.27 -0.17 7.80 -4.42 -0.03 -0.20 16 27 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.16 2.44 7.73 -2.91 -0.02 2.42 16 29 H 0.41 7.22 6.52 -92.71 -0.60 6.61 16 30 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.39 9.29 9.05 -74.06 -0.67 8.62 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.38 20.33 7.54 -92.71 -0.70 19.63 16 36 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.18 2.63 6.40 -2.91 -0.02 2.61 16 Total: -1.00 -76.03 337.46 -0.52 -76.55 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.84 Total: 31.01 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.38 Total: 7.99 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -6.08 Total: -128.05 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.01 Total: -35.57 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.03 -0.52 -76.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497092990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.369 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds