Wall clock time and date at job start Tue Mar 31 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48140 * 110.99838 * 2 1 4 4 C 1.54791 * 101.87795 * 95.47180 * 3 2 1 5 5 H 1.09006 * 111.02610 * 142.26449 * 4 3 2 6 6 N 1.46500 * 110.85079 * 265.81342 * 4 3 2 7 7 C 1.34775 * 119.99854 * 199.26365 * 6 4 3 8 8 O 1.21592 * 120.00199 * 0.02562 * 7 6 4 9 9 C 1.47640 * 120.00286 * 180.02562 * 7 6 4 10 10 C 1.40006 * 119.89872 * 180.02562 * 9 7 6 11 11 C 1.36322 * 120.10673 * 180.23335 * 10 9 7 12 12 C 1.40884 * 119.88938 * 359.52103 * 11 10 9 13 13 C 1.41110 * 120.10050 * 180.23407 * 12 11 10 14 14 H 1.08002 * 119.99551 * 204.78226 * 13 12 11 15 15 C 1.40225 * 120.00360 * 24.77421 * 13 12 11 16 16 N 1.30645 * 119.99670 * 17.74169 * 15 13 12 17 17 Si 1.86801 * 120.00217 * 197.73998 * 15 13 12 18 18 H 1.48498 * 109.47059 * 89.99828 * 17 15 13 19 19 H 1.48498 * 109.47335 * 210.00155 * 17 15 13 20 20 H 1.48503 * 109.47224 * 329.99927 * 17 15 13 21 21 C 1.40888 * 119.79542 * 0.47399 * 12 11 10 22 22 C 1.36312 * 119.88702 * 359.75621 * 21 12 11 23 23 C 1.51803 * 102.23237 * 23.99921 * 4 3 2 24 24 O 1.21280 * 126.04105 * 165.19320 * 23 4 3 25 25 N 1.34597 * 107.92357 * 345.17827 * 23 4 3 26 26 H 1.08995 * 109.47259 * 299.93848 * 1 2 3 27 27 H 1.09002 * 109.46997 * 59.94593 * 1 2 3 28 28 H 1.09004 * 109.46612 * 179.97438 * 1 2 3 29 29 H 1.09008 * 110.94405 * 337.32184 * 3 2 1 30 30 H 1.09004 * 110.94720 * 213.62347 * 3 2 1 31 31 H 0.96993 * 120.00439 * 19.26471 * 6 4 3 32 32 H 1.08005 * 119.94885 * 359.95325 * 10 9 7 33 33 H 1.08000 * 120.05418 * 179.71744 * 11 10 9 34 34 H 0.97006 * 119.99884 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.05298 * 179.73744 * 21 12 11 36 36 H 1.08006 * 119.93860 * 179.97438 * 22 21 12 37 37 H 0.97000 * 123.52562 * 178.41032 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 2.2489 1.6287 1.5079 5 1 3.1579 2.2095 1.6646 6 7 1.0971 2.2905 2.1255 7 6 1.2407 2.9361 3.2999 8 8 2.3263 2.9695 3.8465 9 6 0.0798 3.6026 3.9228 10 6 0.2316 4.2730 5.1425 11 6 -0.8384 4.8858 5.7237 12 6 -2.0963 4.8524 5.0900 13 6 -3.2058 5.4894 5.6852 14 1 -4.2071 5.1567 5.4549 15 6 -3.0083 6.5544 6.5758 16 7 -1.8636 7.1837 6.5979 17 14 -4.3819 7.0733 7.7306 18 1 -4.2721 6.3150 9.0026 19 1 -4.2708 8.5275 8.0100 20 1 -5.6947 6.7899 7.0971 21 6 -2.2440 4.1766 3.8626 22 6 -1.1693 3.5627 3.2915 23 6 2.4110 0.2168 2.0413 24 8 2.8679 -0.0896 3.1222 25 7 1.9576 -0.6351 1.1030 26 1 -0.3633 0.5128 0.8905 27 1 -0.3633 0.5147 -0.8895 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2625 2.0834 -0.3925 30 1 2.9309 1.4431 -0.5637 31 1 0.2311 2.2642 1.6894 32 1 1.1970 4.3008 5.6259 33 1 -0.7214 5.3988 6.6668 34 1 -1.7271 7.9206 7.2137 35 1 -3.2073 4.1447 3.3753 36 1 -1.2817 3.0441 2.3508 37 1 1.9765 -1.5999 1.2014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597619487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:11 Heat of formation + Delta-G solvation = -6.627911 kcal Electronic energy + Delta-G solvation = -22397.771739 eV Core-core repulsion = 18948.099506 eV Total energy + Delta-G solvation = -3449.672233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39592 -38.89705 -37.43238 -37.12119 -34.24249 -33.92845 -31.45268 -30.68705 -29.89138 -29.20155 -26.25284 -25.32111 -22.91745 -22.28396 -21.27119 -20.68824 -19.89131 -17.97718 -17.60237 -16.91662 -16.81377 -15.64081 -15.43523 -15.26947 -14.93052 -14.22474 -14.11381 -13.99925 -13.57273 -13.46528 -13.30273 -12.88766 -12.75711 -12.66383 -12.27405 -11.93071 -11.75120 -11.45552 -11.28465 -11.01139 -10.75625 -10.68396 -10.16238 -10.09995 -9.59247 -9.38851 -9.11439 -8.88380 -8.51122 -7.75928 -7.63416 -7.06538 -4.65487 2.14286 2.29950 2.64687 2.88231 2.93331 2.96121 2.98829 3.53734 3.69366 3.72735 3.96109 4.22857 4.33092 4.54653 4.73806 5.08317 5.10785 5.34696 5.48702 5.49826 5.52611 5.84670 5.92312 5.96363 6.23200 6.61528 6.74838 6.75658 6.80261 6.99250 7.03692 7.36791 7.38239 7.54289 7.66478 7.81405 7.98286 8.07843 8.12409 8.38070 8.57786 8.69968 8.94183 9.85309 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033039 B = 0.003468 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.281205 B = 8072.286581 C = 8505.986551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.290 5.290 3 C 0.021 3.979 4 C 0.089 3.911 5 H 0.128 0.872 6 N -0.729 5.729 7 C 0.571 3.429 8 O -0.551 6.551 9 C -0.284 4.284 10 C -0.034 4.034 11 C -0.182 4.182 12 C 0.128 3.872 13 C -0.441 4.441 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.767 5.767 17 Si 0.915 3.085 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.234 4.234 22 C -0.049 4.049 23 C 0.492 3.508 24 O -0.495 6.495 25 N -0.579 5.579 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.398 0.602 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.288 0.712 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -7.841 -12.351 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 N -0.108 5.108 3 C -0.106 4.106 4 C -0.022 4.022 5 H 0.145 0.855 6 N -0.386 5.386 7 C 0.366 3.634 8 O -0.430 6.430 9 C -0.288 4.288 10 C -0.053 4.053 11 C -0.201 4.201 12 C 0.125 3.875 13 C -0.469 4.469 14 H 0.103 0.897 15 C -0.148 4.148 16 N -0.390 5.390 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.254 4.254 22 C -0.068 4.068 23 C 0.273 3.727 24 O -0.364 6.364 25 N -0.330 5.330 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.234 0.766 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.068 -7.916 -11.654 14.239 hybrid contribution -1.416 0.324 0.845 1.680 sum 0.652 -7.592 -10.810 13.226 Atomic orbital electron populations 1.23325 0.87510 1.03722 1.02315 1.64941 1.08094 1.14937 1.22852 1.23963 1.03728 0.88389 0.94550 1.22049 0.94716 0.92439 0.93005 0.85453 1.45873 1.10736 1.56954 1.25023 1.18730 0.89208 0.76621 0.78848 1.90698 1.28195 1.61656 1.62472 1.18815 0.92259 1.15783 1.01965 1.20487 0.97888 0.93809 0.93112 1.21022 0.92891 1.04602 1.01571 1.17790 0.92945 0.87648 0.89105 1.19865 0.94769 1.12024 1.20225 0.89666 1.26119 0.96979 0.95348 0.96396 1.69745 1.24318 1.15217 1.29685 0.86192 0.81230 0.78283 0.80483 1.18868 1.19949 1.18283 1.20653 0.97467 1.09094 0.98150 1.20300 0.92805 0.97068 0.96661 1.21987 0.77665 0.89167 0.83861 1.90806 1.43742 1.82040 1.19822 1.45962 1.62807 1.09084 1.15183 0.94040 0.89198 0.90235 0.87612 0.86478 0.76565 0.88057 0.86075 0.90061 0.88430 0.89641 0.72943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.15 9.74 60.07 0.58 0.44 16 2 N -0.29 -2.58 5.88 -119.13 -0.70 -3.28 16 3 C 0.02 0.18 6.77 -2.20 -0.01 0.17 16 4 C 0.09 1.22 3.34 -67.59 -0.23 0.99 16 5 H 0.13 1.89 7.71 -51.93 -0.40 1.49 16 6 N -0.73 -11.59 4.99 -54.48 -0.27 -11.87 16 7 C 0.57 12.23 7.76 -12.42 -0.10 12.13 16 8 O -0.55 -13.67 16.06 5.28 0.08 -13.58 16 9 C -0.28 -6.47 5.89 -104.73 -0.62 -7.08 16 10 C -0.03 -0.83 9.52 -39.61 -0.38 -1.21 16 11 C -0.18 -4.63 8.63 -39.27 -0.34 -4.97 16 12 C 0.13 3.23 5.57 -106.80 -0.60 2.63 16 13 C -0.44 -10.82 9.04 -37.75 -0.34 -11.17 16 14 H 0.09 1.97 7.91 -52.49 -0.42 1.56 16 15 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 16 N -0.77 -18.56 10.95 55.56 0.61 -17.95 16 17 Si 0.91 17.20 29.60 -169.99 -5.03 12.17 16 18 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 21 C -0.23 -5.29 9.73 -39.27 -0.38 -5.67 16 22 C -0.05 -1.02 9.47 -39.61 -0.38 -1.40 16 23 C 0.49 7.62 8.28 -10.52 -0.09 7.53 16 24 O -0.50 -10.18 18.03 5.56 0.10 -10.08 16 25 N -0.58 -6.37 5.96 31.48 0.19 -6.19 16 26 H 0.04 0.38 6.60 -51.93 -0.34 0.04 16 27 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.11 0.72 7.65 -51.92 -0.40 0.32 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.40 5.33 5.18 -40.82 -0.21 5.12 16 32 H 0.10 2.49 7.63 -52.48 -0.40 2.09 16 33 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 34 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 35 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.09 1.41 6.37 -52.48 -0.33 1.08 16 37 H 0.43 3.92 8.96 -185.34 -1.66 2.26 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -32.21 316.60 -8.52 -40.73 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.31 Total: 11.26 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.96 Total: -5.98 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.18 Total: -39.28 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.19 Total: -23.67 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.21 -8.52 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597619487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.102 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds