Wall clock time and date at job start Tue Mar 31 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48137 * 111.00097 * 2 1 4 4 C 1.54796 * 101.87347 * 211.88108 * 3 2 1 5 5 H 1.08997 * 110.84979 * 265.60831 * 4 3 2 6 6 N 1.46507 * 110.85061 * 142.18256 * 4 3 2 7 7 C 1.34774 * 119.99684 * 154.99901 * 6 4 3 8 8 O 1.21581 * 120.00199 * 0.02562 * 7 6 4 9 9 C 1.47643 * 119.99744 * 179.97438 * 7 6 4 10 10 C 1.40013 * 119.89689 * 180.02562 * 9 7 6 11 11 C 1.36314 * 120.10783 * 180.02562 * 10 9 7 12 12 C 1.40890 * 119.89177 * 0.27339 * 11 10 9 13 13 C 1.41109 * 120.10178 * 179.70208 * 12 11 10 14 14 H 1.07995 * 120.00021 * 24.53431 * 13 12 11 15 15 C 1.40229 * 119.99857 * 204.53266 * 13 12 11 16 16 N 1.30649 * 120.00044 * 17.73748 * 15 13 12 17 17 Si 1.86797 * 119.99983 * 197.73459 * 15 13 12 18 18 H 1.48497 * 109.47263 * 90.00355 * 17 15 13 19 19 H 1.48503 * 109.47271 * 210.00246 * 17 15 13 20 20 H 1.48502 * 109.47316 * 329.99981 * 17 15 13 21 21 C 1.40889 * 119.79126 * 359.45257 * 12 11 10 22 22 C 1.36319 * 119.89097 * 0.55003 * 21 12 11 23 23 C 1.51810 * 102.23211 * 23.99590 * 4 3 2 24 24 O 1.21282 * 126.03487 * 165.17193 * 23 4 3 25 25 N 1.34594 * 107.91976 * 345.17948 * 23 4 3 26 26 H 1.09001 * 109.47300 * 60.00404 * 1 2 3 27 27 H 1.09000 * 109.47607 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47412 * 300.00660 * 1 2 3 29 29 H 1.08997 * 110.95100 * 93.73449 * 3 2 1 30 30 H 1.08999 * 110.94679 * 330.02256 * 3 2 1 31 31 H 0.96998 * 119.99849 * 334.99809 * 6 4 3 32 32 H 1.08001 * 119.94228 * 359.97438 * 10 9 7 33 33 H 1.08003 * 120.05313 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00304 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.05260 * 180.27095 * 21 12 11 36 36 H 1.07999 * 119.94359 * 179.70645 * 22 21 12 37 37 H 0.96998 * 123.51872 * 178.40495 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 3.3149 1.2193 -0.8001 5 1 4.1598 1.0622 -0.1297 6 7 3.5469 2.3789 -1.6649 7 6 4.8003 2.6952 -2.0461 8 8 5.7384 2.0179 -1.6727 9 6 5.0340 3.8634 -2.9181 10 6 6.3370 4.1897 -3.3133 11 6 6.5578 5.2677 -4.1179 12 6 5.4728 6.0574 -4.5471 13 6 5.6970 7.1780 -5.3750 14 1 6.5794 7.2227 -5.9959 15 6 4.7738 8.2334 -5.3913 16 7 3.9086 8.3597 -4.4205 17 14 4.7812 9.4590 -6.8010 18 1 3.8771 8.9805 -7.8776 19 1 4.3117 10.7799 -6.3111 20 1 6.1605 9.5909 -7.3351 21 6 4.1629 5.7217 -4.1516 22 6 3.9521 4.6418 -3.3468 23 6 3.0363 -0.0237 -1.6259 24 8 3.6734 -0.3991 -2.5873 25 7 1.9575 -0.6353 -1.1028 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 2.2014 1.7231 1.0158 30 1 1.3163 2.0628 -0.5086 31 1 2.7984 2.9190 -1.9631 32 1 7.1685 3.5868 -2.9794 33 1 7.5632 5.5184 -4.4225 34 1 3.2703 9.0899 -4.4316 35 1 3.3277 6.3215 -4.4818 36 1 2.9488 4.3865 -3.0392 37 1 1.5684 -1.4435 -1.4720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597619488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:14 Heat of formation + Delta-G solvation = -7.474101 kcal Electronic energy + Delta-G solvation = -22131.145401 eV Core-core repulsion = 18681.436474 eV Total energy + Delta-G solvation = -3449.708927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.18678 -38.90391 -37.43258 -37.07664 -34.34153 -33.88829 -31.62849 -30.83116 -29.53033 -29.37704 -26.14028 -25.14194 -22.98488 -22.28738 -21.11840 -20.72676 -19.74721 -17.95825 -17.54037 -17.00948 -16.59297 -15.98257 -15.48495 -15.09228 -14.63898 -14.20263 -14.05806 -14.05134 -13.81269 -13.46458 -13.26371 -12.88602 -12.78791 -12.59549 -12.13617 -11.94608 -11.65331 -11.37978 -11.30473 -11.08729 -10.97232 -10.68429 -10.29703 -10.05524 -9.57651 -9.38083 -9.05433 -8.70651 -8.32173 -7.73915 -7.56295 -7.05768 -4.62132 2.18917 2.38395 2.62680 2.90476 2.94679 2.97139 3.02596 3.38416 3.72437 3.78874 4.18329 4.21956 4.38652 4.59584 4.70387 4.96775 5.00956 5.34651 5.37987 5.49927 5.56837 5.66566 5.98955 6.02579 6.31311 6.69629 6.76014 6.81069 6.81407 7.01366 7.11249 7.31594 7.41665 7.60974 7.74896 7.84423 8.04808 8.11062 8.15904 8.37947 8.61426 8.73460 9.00471 9.86318 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.003418 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.723740 B = 8190.081339 C = 8792.605146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.282 5.282 3 C 0.012 3.988 4 C 0.116 3.884 5 H 0.134 0.866 6 N -0.726 5.726 7 C 0.578 3.422 8 O -0.561 6.561 9 C -0.282 4.282 10 C -0.019 4.019 11 C -0.238 4.238 12 C 0.129 3.871 13 C -0.442 4.442 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.772 5.772 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.178 4.178 22 C -0.062 4.062 23 C 0.501 3.499 24 O -0.498 6.498 25 N -0.587 5.587 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.286 0.714 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 -7.481 7.275 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 N -0.101 5.101 3 C -0.116 4.116 4 C 0.006 3.994 5 H 0.152 0.848 6 N -0.381 5.381 7 C 0.373 3.627 8 O -0.441 6.441 9 C -0.287 4.287 10 C -0.039 4.039 11 C -0.258 4.258 12 C 0.126 3.874 13 C -0.469 4.469 14 H 0.104 0.896 15 C -0.147 4.147 16 N -0.395 5.395 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.182 1.182 21 C -0.197 4.197 22 C -0.081 4.081 23 C 0.283 3.717 24 O -0.368 6.368 25 N -0.337 5.337 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -9.637 -8.168 7.557 14.721 hybrid contribution -1.248 0.966 -1.395 2.107 sum -10.885 -7.201 6.162 14.433 Atomic orbital electron populations 1.23188 0.87207 1.03551 1.02654 1.66010 1.08502 1.13414 1.22136 1.24076 0.94972 0.89215 1.03327 1.21661 0.99276 0.85995 0.92516 0.84842 1.45696 1.10148 1.29067 1.53174 1.18618 0.81046 0.84154 0.78872 1.90654 1.42167 1.53683 1.57607 1.18813 0.95034 1.01644 1.13183 1.20366 0.94654 0.94683 0.94160 1.20724 0.97748 1.00691 1.06607 1.17791 0.91139 0.90598 0.87865 1.19874 1.06186 1.00612 1.20273 0.89644 1.26105 0.93669 0.98861 0.96051 1.69741 1.13984 1.28170 1.27623 0.86196 0.80210 0.78751 0.81047 1.18940 1.20011 1.18247 1.20966 0.97527 0.97872 1.03360 1.20436 0.95263 0.95168 0.97271 1.21633 0.80032 0.86171 0.83863 1.90812 1.51058 1.69015 1.25868 1.46012 1.30992 1.28110 1.28622 0.93967 0.90239 0.88971 0.86115 0.90895 0.76360 0.87978 0.88288 0.90244 0.86199 0.89528 0.73838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.10 9.82 60.06 0.59 0.49 16 2 N -0.28 -2.51 5.86 -119.13 -0.70 -3.20 16 3 C 0.01 0.11 6.79 -2.20 -0.01 0.10 16 4 C 0.12 1.64 3.49 -67.58 -0.24 1.40 16 5 H 0.13 2.03 7.54 -51.93 -0.39 1.64 16 6 N -0.73 -12.09 5.11 -54.48 -0.28 -12.37 16 7 C 0.58 12.53 7.76 -12.42 -0.10 12.43 16 8 O -0.56 -13.74 15.96 5.29 0.08 -13.66 16 9 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 10 C -0.02 -0.47 9.52 -39.61 -0.38 -0.84 16 11 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 12 C 0.13 3.29 5.57 -106.80 -0.60 2.70 16 13 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 14 H 0.09 2.03 7.91 -52.49 -0.42 1.62 16 15 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 16 N -0.77 -18.26 10.95 55.56 0.61 -17.65 16 17 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 21 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 22 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 23 C 0.50 7.81 8.29 -10.52 -0.09 7.73 16 24 O -0.50 -10.24 18.03 5.56 0.10 -10.14 16 25 N -0.59 -6.42 6.01 31.48 0.19 -6.23 16 26 H 0.04 0.26 8.10 -51.93 -0.42 -0.16 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.58 7.53 -51.93 -0.39 0.19 16 31 H 0.40 5.79 6.44 -40.82 -0.26 5.53 16 32 H 0.10 2.38 7.63 -52.49 -0.40 1.97 16 33 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 34 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 35 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 36 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 37 H 0.42 3.72 8.90 -185.35 -1.65 2.07 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -32.08 319.36 -8.59 -40.66 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.41 Total: 11.06 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.96 Total: -5.43 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.18 Total: -39.45 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.18 Total: -23.80 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.08 -8.59 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597619488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.188 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds