Wall clock time and date at job start Tue Mar 31 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48137 * 111.00097 * 2 1 4 4 C 1.54796 * 101.87347 * 211.88108 * 3 2 1 5 5 H 1.08997 * 110.84979 * 265.60831 * 4 3 2 6 6 N 1.46507 * 110.85061 * 142.18256 * 4 3 2 7 7 C 1.34774 * 119.99684 * 154.99901 * 6 4 3 8 8 O 1.21581 * 120.00199 * 0.02562 * 7 6 4 9 9 C 1.47643 * 119.99744 * 179.97438 * 7 6 4 10 10 C 1.40013 * 119.89689 * 180.02562 * 9 7 6 11 11 C 1.36314 * 120.10783 * 180.02562 * 10 9 7 12 12 C 1.40890 * 119.89177 * 0.27339 * 11 10 9 13 13 C 1.41109 * 120.10178 * 179.70208 * 12 11 10 14 14 H 1.07995 * 120.00021 * 24.53431 * 13 12 11 15 15 C 1.40229 * 119.99857 * 204.53266 * 13 12 11 16 16 N 1.30649 * 120.00044 * 17.73748 * 15 13 12 17 17 Si 1.86797 * 119.99983 * 197.73459 * 15 13 12 18 18 H 1.48497 * 109.47263 * 90.00355 * 17 15 13 19 19 H 1.48503 * 109.47271 * 210.00246 * 17 15 13 20 20 H 1.48502 * 109.47316 * 329.99981 * 17 15 13 21 21 C 1.40889 * 119.79126 * 359.45257 * 12 11 10 22 22 C 1.36319 * 119.89097 * 0.55003 * 21 12 11 23 23 C 1.51810 * 102.23211 * 23.99590 * 4 3 2 24 24 O 1.21282 * 126.03487 * 165.17193 * 23 4 3 25 25 N 1.34594 * 107.91976 * 345.17948 * 23 4 3 26 26 H 1.09001 * 109.47300 * 60.00404 * 1 2 3 27 27 H 1.09000 * 109.47607 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47412 * 300.00660 * 1 2 3 29 29 H 1.08997 * 110.95100 * 93.73449 * 3 2 1 30 30 H 1.08999 * 110.94679 * 330.02256 * 3 2 1 31 31 H 0.96998 * 119.99849 * 334.99809 * 6 4 3 32 32 H 1.08001 * 119.94228 * 359.97438 * 10 9 7 33 33 H 1.08003 * 120.05313 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00304 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.05260 * 180.27095 * 21 12 11 36 36 H 1.07999 * 119.94359 * 179.70645 * 22 21 12 37 37 H 0.96998 * 123.51872 * 178.40495 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 3.3149 1.2193 -0.8001 5 1 4.1598 1.0622 -0.1297 6 7 3.5469 2.3789 -1.6649 7 6 4.8003 2.6952 -2.0461 8 8 5.7384 2.0179 -1.6727 9 6 5.0340 3.8634 -2.9181 10 6 6.3370 4.1897 -3.3133 11 6 6.5578 5.2677 -4.1179 12 6 5.4728 6.0574 -4.5471 13 6 5.6970 7.1780 -5.3750 14 1 6.5794 7.2227 -5.9959 15 6 4.7738 8.2334 -5.3913 16 7 3.9086 8.3597 -4.4205 17 14 4.7812 9.4590 -6.8010 18 1 3.8771 8.9805 -7.8776 19 1 4.3117 10.7799 -6.3111 20 1 6.1605 9.5909 -7.3351 21 6 4.1629 5.7217 -4.1516 22 6 3.9521 4.6418 -3.3468 23 6 3.0363 -0.0237 -1.6259 24 8 3.6734 -0.3991 -2.5873 25 7 1.9575 -0.6353 -1.1028 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 2.2014 1.7231 1.0158 30 1 1.3163 2.0628 -0.5086 31 1 2.7984 2.9190 -1.9631 32 1 7.1685 3.5868 -2.9794 33 1 7.5632 5.5184 -4.4225 34 1 3.2703 9.0899 -4.4316 35 1 3.3277 6.3215 -4.4818 36 1 2.9488 4.3865 -3.0392 37 1 1.5684 -1.4435 -1.4720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597619488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:14 Heat of formation + Delta-G solvation = -31.785946 kcal Electronic energy + Delta-G solvation = -22132.199642 eV Core-core repulsion = 18681.436474 eV Total energy + Delta-G solvation = -3450.763168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24027 -40.54654 -38.88578 -38.57609 -35.77798 -35.67584 -32.47480 -32.41200 -31.32727 -30.77125 -27.75446 -26.09315 -24.06448 -23.72645 -22.83291 -22.14390 -21.31312 -19.38405 -19.05939 -18.38735 -17.80752 -17.24459 -17.10813 -16.29819 -15.97808 -15.76379 -15.40089 -15.19378 -15.06348 -14.89686 -14.76724 -14.44763 -13.93150 -13.72036 -13.69234 -13.26883 -13.17078 -12.86746 -12.65510 -12.43157 -12.39164 -12.05247 -11.77246 -11.60753 -11.38084 -11.13724 -10.81118 -10.11317 -9.58966 -9.43036 -9.17034 -8.80309 -6.49349 0.41202 1.14132 1.19434 1.39088 1.43360 1.53450 1.71698 2.09003 2.16246 2.17718 2.75126 3.16406 3.25042 3.51881 3.69048 3.93435 4.15899 4.28703 4.42165 4.43444 4.52936 4.64959 4.74608 4.90742 4.95719 5.00267 5.02293 5.13854 5.28521 5.35514 5.57373 5.79511 5.90569 5.91518 5.98101 6.21473 6.35136 6.52250 6.57810 6.76035 6.87540 7.12034 7.35824 8.15108 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.003418 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.723740 B = 8190.081339 C = 8792.605146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.287 5.287 3 C 0.026 3.974 4 C 0.107 3.893 5 H 0.120 0.880 6 N -0.708 5.708 7 C 0.577 3.423 8 O -0.596 6.596 9 C -0.294 4.294 10 C -0.033 4.033 11 C -0.254 4.254 12 C 0.103 3.897 13 C -0.473 4.473 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.795 5.795 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.259 1.259 21 C -0.197 4.197 22 C -0.051 4.051 23 C 0.490 3.510 24 O -0.561 6.561 25 N -0.564 5.564 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.412 0.588 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.298 0.702 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 -6.942 8.142 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 N -0.106 5.106 3 C -0.102 4.102 4 C -0.002 4.002 5 H 0.138 0.862 6 N -0.362 5.362 7 C 0.371 3.629 8 O -0.479 6.479 9 C -0.299 4.299 10 C -0.052 4.052 11 C -0.273 4.273 12 C 0.099 3.901 13 C -0.500 4.500 14 H 0.102 0.898 15 C -0.180 4.180 16 N -0.418 5.418 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.183 1.183 21 C -0.216 4.216 22 C -0.070 4.070 23 C 0.273 3.727 24 O -0.436 6.436 25 N -0.313 5.313 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.134 0.866 29 H 0.166 0.834 30 H 0.112 0.888 31 H 0.251 0.749 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.575 -7.655 8.483 16.990 hybrid contribution -0.461 0.714 -1.522 1.744 sum -13.036 -6.941 6.960 16.327 Atomic orbital electron populations 1.23335 0.84493 1.04978 1.03889 1.66048 1.10813 1.13197 1.20530 1.24186 0.92139 0.89748 1.04090 1.21879 1.01720 0.84528 0.92121 0.86192 1.45426 1.08726 1.29575 1.52486 1.18453 0.82302 0.83519 0.78627 1.90631 1.43738 1.54648 1.58920 1.19108 0.95012 1.02406 1.13370 1.20506 0.95485 0.94745 0.94443 1.20854 0.98064 1.01151 1.07227 1.18141 0.91928 0.91352 0.88647 1.20132 1.07324 1.01516 1.21001 0.89761 1.26909 0.92746 1.00130 0.98242 1.69748 1.14212 1.29095 1.28756 0.85101 0.80112 0.76498 0.77504 1.18387 1.18720 1.18288 1.21018 0.96995 0.98926 1.04699 1.20708 0.96816 0.93766 0.95745 1.21831 0.80714 0.86805 0.83358 1.90777 1.53442 1.70693 1.28729 1.45923 1.29446 1.27946 1.27962 0.93722 0.88903 0.86590 0.83388 0.88822 0.74902 0.88169 0.87814 0.89068 0.86580 0.85630 0.72560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.14 9.82 127.69 1.25 1.11 16 2 N -0.29 -4.09 5.86 -530.83 -3.11 -7.20 16 3 C 0.03 0.38 6.79 86.68 0.59 0.97 16 4 C 0.11 2.90 3.49 45.21 0.16 3.05 16 5 H 0.12 3.61 7.54 -2.39 -0.02 3.59 16 6 N -0.71 -22.77 5.11 -444.53 -2.27 -25.04 16 7 C 0.58 25.17 7.76 86.73 0.67 25.85 16 8 O -0.60 -30.00 15.96 -3.97 -0.06 -30.06 16 9 C -0.29 -13.76 5.89 -19.93 -0.12 -13.88 16 10 C -0.03 -1.62 9.52 22.25 0.21 -1.40 16 11 C -0.25 -12.84 9.73 22.47 0.22 -12.62 16 12 C 0.10 5.36 5.57 -21.28 -0.12 5.24 16 13 C -0.47 -23.91 9.04 23.46 0.21 -23.69 16 14 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 15 C 0.04 1.80 5.14 85.35 0.44 2.24 16 16 N -0.79 -37.24 10.95 21.87 0.24 -37.00 16 17 Si 0.99 34.48 29.60 68.60 2.03 36.51 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 19 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 20 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 21 C -0.20 -9.69 8.63 22.47 0.19 -9.49 16 22 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 23 C 0.49 15.03 8.29 88.04 0.73 15.76 16 24 O -0.56 -23.71 18.03 -3.04 -0.05 -23.76 16 25 N -0.56 -11.20 6.01 -172.81 -1.04 -12.24 16 26 H 0.04 0.35 8.10 -2.39 -0.02 0.33 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.05 7.53 -2.39 -0.02 1.03 16 31 H 0.41 10.95 6.44 -92.71 -0.60 10.35 16 32 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 33 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.30 12.31 8.29 -92.71 -0.77 11.54 16 35 H 0.12 5.72 6.16 -2.91 -0.02 5.70 16 36 H 0.13 4.34 6.37 -2.91 -0.02 4.32 16 37 H 0.43 6.78 8.90 -215.66 -1.92 4.86 16 Total: -1.00 -73.06 319.36 -1.00 -74.06 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -1.38 Total: 33.63 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 4.65 Total: -8.91 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -6.18 Total: -81.47 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -0.12 Total: -53.82 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -73.06 -1.00 -74.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597619488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.270 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds