Wall clock time and date at job start Tue Mar 31 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.46899 * 126.88219 * 195.68312 * 3 2 1 5 5 C 1.41009 * 126.33007 * 359.96109 * 4 3 2 6 6 H 1.08002 * 120.00383 * 359.72523 * 5 4 3 7 7 C 1.40139 * 120.00052 * 179.43991 * 5 4 3 8 8 N 1.30724 * 119.99474 * 0.28214 * 7 5 4 9 9 Si 1.86789 * 120.00299 * 180.28038 * 7 5 4 10 10 H 1.48506 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47491 * 120.00261 * 9 7 5 12 12 H 1.48506 * 109.46957 * 240.00409 * 9 7 5 13 13 N 1.32853 * 107.33714 * 179.70638 * 4 3 2 14 14 N 1.39919 * 109.59151 * 0.25908 * 13 4 3 15 15 C 1.36911 * 109.38826 * 0.02562 * 14 13 4 16 16 N 1.33549 * 120.94331 * 180.02562 * 15 14 13 17 17 C 1.31535 * 121.37815 * 0.02562 * 16 15 14 18 18 C 1.39592 * 120.24657 * 0.02562 * 17 16 15 19 19 C 1.37524 * 131.19663 * 179.97438 * 14 13 4 20 20 C 1.47706 * 120.55919 * 0.02562 * 19 14 13 21 21 C 1.39651 * 120.15145 * 4.72310 * 20 19 14 22 22 C 1.37938 * 119.84089 * 179.69771 * 21 20 19 23 23 C 1.38372 * 120.15402 * 0.57759 * 22 21 20 24 24 C 1.38377 * 120.30625 * 359.72478 * 23 22 21 25 25 C 1.37936 * 120.15075 * 359.97190 * 24 23 22 26 26 H 0.97000 * 119.99113 * 179.97438 * 8 7 5 27 27 H 1.08006 * 119.87306 * 179.97438 * 17 16 15 28 28 H 1.08006 * 120.42846 * 179.97438 * 18 17 16 29 29 H 1.07995 * 120.07666 * 359.97438 * 21 20 19 30 30 H 1.08004 * 119.92082 * 180.29949 * 22 21 20 31 31 H 1.08001 * 119.84709 * 179.69364 * 23 22 21 32 32 H 1.07993 * 119.92096 * 180.02562 * 24 23 22 33 33 H 1.08001 * 120.07748 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4491 1.1323 0.3176 5 6 3.0413 2.4321 0.6818 6 1 1.9898 2.6707 0.7436 7 6 4.0003 3.4126 0.9694 8 7 5.2730 3.1237 0.8947 9 14 3.4601 5.1322 1.4595 10 1 1.9766 5.2011 1.4690 11 1 3.9795 5.4470 2.8146 12 1 3.9945 6.1158 0.4836 13 7 4.7013 0.7032 0.2037 14 7 4.7030 -0.6435 -0.1761 15 6 3.4122 -1.0804 -0.3073 16 7 3.1463 -2.3397 -0.6636 17 6 4.1104 -3.2027 -0.9000 18 6 5.4461 -2.8147 -0.7812 19 6 5.7390 -1.5154 -0.4166 20 6 7.1412 -1.0707 -0.2832 21 6 7.4284 0.2134 0.1844 22 6 8.7403 0.6199 0.3123 23 6 9.7703 -0.2373 -0.0327 24 6 9.4928 -1.5089 -0.5026 25 6 8.1856 -1.9306 -0.6297 26 1 5.9368 3.8025 1.0934 27 1 3.8677 -4.2154 -1.1863 28 1 6.2401 -3.5210 -0.9742 29 1 6.6253 0.8851 0.4494 30 1 8.9639 1.6111 0.6784 31 1 10.7956 0.0879 0.0648 32 1 10.3015 -2.1729 -0.7697 33 1 7.9704 -2.9234 -0.9962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000480022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:21 Heat of formation + Delta-G solvation = 158.300958 kcal Electronic energy + Delta-G solvation = -21433.287068 eV Core-core repulsion = 18232.649696 eV Total energy + Delta-G solvation = -3200.637372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10459 -38.74098 -36.91269 -35.20949 -34.01311 -33.58791 -30.96806 -30.32517 -29.74167 -28.15811 -26.73967 -24.07271 -23.32730 -21.79491 -21.39495 -20.74439 -18.02263 -17.59744 -16.89785 -16.15039 -15.59766 -15.23573 -15.11136 -14.90419 -14.64803 -14.22810 -13.29877 -13.15152 -12.98713 -12.76926 -12.61186 -12.27087 -12.11170 -11.77891 -11.74936 -11.38859 -11.29881 -11.07691 -11.01894 -10.76786 -10.49675 -10.35066 -9.81416 -9.70278 -8.70791 -8.64563 -8.45752 -8.38132 -7.02541 -6.85963 -4.98079 0.61549 1.45869 1.67392 2.05286 2.82471 2.95805 2.99301 3.04060 3.52592 3.75311 3.84033 3.84917 4.18145 4.45158 4.60104 4.61794 4.94922 5.02042 5.13127 5.14654 5.30114 5.45367 5.60316 5.65261 5.81552 5.88860 5.99921 6.13117 6.33196 6.43527 6.56990 6.61820 6.68371 6.87243 6.92945 6.96846 7.26407 7.51060 7.92107 8.24589 8.35540 8.49727 8.79532 9.08302 9.92082 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.007298 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.053079 B = 3835.681264 C = 6144.853247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.334 3.666 3 C -0.257 4.257 4 C 0.275 3.725 5 C -0.400 4.400 6 H 0.098 0.902 7 C 0.071 3.929 8 N -0.743 5.743 9 Si 0.923 3.077 10 H -0.256 1.256 11 H -0.270 1.270 12 H -0.270 1.270 13 N -0.342 5.342 14 N -0.291 5.291 15 C 0.311 3.689 16 N -0.500 5.500 17 C 0.172 3.828 18 C -0.272 4.272 19 C 0.247 3.753 20 C -0.077 4.077 21 C -0.077 4.077 22 C -0.129 4.129 23 C -0.107 4.107 24 C -0.140 4.140 25 C -0.091 4.091 26 H 0.285 0.715 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.195 0.805 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.889 -5.904 -1.544 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C 0.024 3.976 3 C -0.276 4.276 4 C 0.132 3.868 5 C -0.436 4.436 6 H 0.116 0.884 7 C -0.154 4.154 8 N -0.366 5.366 9 Si 0.746 3.254 10 H -0.180 1.180 11 H -0.195 1.195 12 H -0.195 1.195 13 N -0.178 5.178 14 N -0.054 5.054 15 C 0.081 3.919 16 N -0.213 5.213 17 C -0.007 4.007 18 C -0.296 4.296 19 C 0.123 3.877 20 C -0.078 4.078 21 C -0.095 4.095 22 C -0.147 4.147 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.110 4.110 26 H 0.096 0.904 27 H 0.184 0.816 28 H 0.170 0.830 29 H 0.211 0.789 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.468 -5.451 -1.416 11.887 hybrid contribution 0.524 0.547 0.126 0.767 sum 10.992 -4.905 -1.289 12.105 Atomic orbital electron populations 1.81045 1.11848 1.09778 1.15388 1.24209 0.90914 0.91640 0.90849 1.16263 0.84918 0.94135 1.32247 1.20307 0.86570 0.91603 0.88319 1.19038 0.95205 0.90886 1.38513 0.88438 1.26055 0.94377 1.01648 0.93284 1.69729 1.01282 1.35411 1.30206 0.85982 0.80636 0.79884 0.78900 1.17970 1.19459 1.19468 1.78776 1.17335 0.82052 1.39614 1.47761 1.04336 1.12024 1.41234 1.20068 0.84324 0.90316 0.97165 1.67996 1.35540 1.00246 1.17548 1.22929 0.87910 0.98534 0.91348 1.21632 0.99027 0.94780 1.14210 1.19343 0.86841 0.88024 0.93537 1.18523 0.89127 0.95879 1.04248 1.23031 0.99485 0.95372 0.91644 1.21241 0.92651 0.99975 1.00797 1.21344 0.99130 0.94118 0.98022 1.20916 0.95998 0.96648 1.02264 1.21169 0.92040 0.98942 0.98827 0.90407 0.81615 0.83037 0.78882 0.85764 0.86390 0.86046 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.45 18.54 41.84 0.78 -11.68 16 2 C 0.33 8.29 15.71 -22.47 -0.35 7.94 16 3 C -0.26 -6.38 6.25 -103.59 -0.65 -7.03 16 4 C 0.28 7.06 6.92 -82.87 -0.57 6.48 16 5 C -0.40 -9.94 9.26 -37.82 -0.35 -10.29 16 6 H 0.10 2.37 7.85 -52.49 -0.41 1.96 16 7 C 0.07 1.63 5.50 -17.31 -0.10 1.54 16 8 N -0.74 -17.16 11.56 55.56 0.64 -16.52 16 9 Si 0.92 17.25 29.56 -169.99 -5.02 12.22 16 10 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 11 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 12 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 13 N -0.34 -8.45 7.62 33.30 0.25 -8.19 16 14 N -0.29 -6.52 3.86 -8.31 -0.03 -6.55 16 15 C 0.31 7.19 7.84 -155.49 -1.22 5.97 16 16 N -0.50 -10.15 10.44 -12.04 -0.13 -10.28 16 17 C 0.17 2.62 11.26 -17.17 -0.19 2.43 16 18 C -0.27 -3.97 9.48 -39.13 -0.37 -4.34 16 19 C 0.25 4.56 6.81 -81.50 -0.55 4.00 16 20 C -0.08 -1.30 5.87 -104.98 -0.62 -1.91 16 21 C -0.08 -1.41 9.47 -39.16 -0.37 -1.78 16 22 C -0.13 -1.94 10.03 -39.64 -0.40 -2.34 16 23 C -0.11 -1.33 10.04 -39.48 -0.40 -1.73 16 24 C -0.14 -1.64 10.03 -39.64 -0.40 -2.04 16 25 C -0.09 -1.18 9.43 -39.17 -0.37 -1.55 16 26 H 0.28 5.88 8.29 -40.82 -0.34 5.54 16 27 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 28 H 0.15 1.55 6.28 -52.48 -0.33 1.22 16 29 H 0.19 4.20 4.61 -52.49 -0.24 3.96 16 30 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.25 6.28 -52.49 -0.33 0.92 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -29.07 302.35 -8.00 -37.07 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -2.14 Total: 4.00 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -6.91 Total: -4.64 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 1.51 Total: -53.22 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.02 Total: 12.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.07 -8.00 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000480022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.376 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds