Wall clock time and date at job start Tue Mar 31 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34013 * 125.11420 * 124.71766 * 10 9 7 12 12 C 1.38397 * 107.83217 * 179.84351 * 11 10 9 13 13 C 1.46483 * 126.86650 * 180.16043 * 12 11 10 14 14 O 1.21337 * 119.99826 * 0.30067 * 13 12 11 15 15 C 1.46821 * 106.26863 * 0.41035 * 12 11 10 16 16 C 1.48249 * 126.52817 * 179.74782 * 15 12 11 17 17 C 1.39408 * 120.11392 * 324.74866 * 16 15 12 18 18 C 1.37980 * 119.88383 * 179.79105 * 17 16 15 19 19 C 1.38450 * 120.11424 * 0.48486 * 18 17 16 20 20 Cl 1.73597 * 119.88574 * 179.76330 * 19 18 17 21 21 C 1.38455 * 120.22922 * 359.74705 * 19 18 17 22 22 C 1.37980 * 120.10954 * 0.02562 * 21 19 18 23 23 N 1.31302 * 106.93809 * 359.74861 * 15 12 11 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 27 27 H 1.07997 * 126.08218 * 359.97438 * 11 10 9 28 28 H 1.07997 * 120.00343 * 180.30017 * 13 12 11 29 29 H 1.07999 * 120.05978 * 0.02562 * 17 16 15 30 30 H 1.08004 * 119.94117 * 180.22966 * 18 17 16 31 31 H 1.07997 * 119.94431 * 180.02562 * 21 19 18 32 32 H 1.08005 * 120.04968 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2294 -4.6043 0.9016 12 6 3.2638 -5.4586 0.5616 13 6 3.6610 -6.6810 1.2642 14 8 3.0541 -7.0371 2.2526 15 6 3.8873 -4.8914 -0.6405 16 6 5.0453 -5.4480 -1.3802 17 6 6.0741 -6.0875 -0.6903 18 6 7.1475 -6.6077 -1.3840 19 6 7.2088 -6.4865 -2.7618 20 17 8.5650 -7.1376 -3.6279 21 6 6.1920 -5.8480 -3.4513 22 6 5.1120 -5.3285 -2.7675 23 7 3.2240 -3.7973 -0.9356 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 1.5608 -4.7179 1.7422 28 1 4.4941 -7.2653 0.9024 29 1 6.0292 -6.1791 0.3849 30 1 7.9433 -7.1066 -0.8507 31 1 6.2443 -5.7564 -4.5261 32 1 4.3191 -4.8310 -3.3064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003188432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:38 Heat of formation + Delta-G solvation = 46.994313 kcal Electronic energy + Delta-G solvation = -19183.587348 eV Core-core repulsion = 15943.397757 eV Total energy + Delta-G solvation = -3240.189591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70641 -39.12927 -38.14265 -36.62350 -34.00112 -32.51137 -31.33295 -30.37737 -29.88942 -27.33262 -24.24071 -23.88134 -22.83701 -21.81129 -19.79845 -19.72330 -17.30178 -16.91425 -16.56288 -15.50604 -15.44408 -15.16493 -14.74833 -14.49777 -14.21097 -13.71318 -13.63971 -13.59397 -13.43210 -12.79709 -12.40087 -12.12055 -11.74270 -11.66367 -11.58938 -11.12655 -11.02070 -10.96965 -10.45885 -10.40134 -9.95190 -9.47268 -9.27006 -9.17279 -8.77845 -8.51020 -7.96821 -6.39904 -4.46375 0.76186 1.17246 1.68891 1.96281 2.55334 3.06130 3.14198 3.22464 3.29470 3.36074 3.73316 4.18854 4.41133 4.64686 4.70761 4.74087 4.96647 5.09520 5.17696 5.30847 5.49024 5.60767 5.62269 5.83307 5.94121 6.07622 6.15688 6.37048 6.55280 6.63057 6.76634 6.92002 7.42250 7.62059 7.65525 7.82128 8.16913 8.60739 9.20773 10.69228 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003981 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.358036 B = 7031.924941 C = 8365.999213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.247 3.753 10 N -0.309 5.309 11 C 0.133 3.867 12 C -0.360 4.360 13 C 0.416 3.584 14 O -0.494 6.494 15 C 0.115 3.885 16 C 0.009 3.991 17 C -0.091 4.091 18 C -0.109 4.109 19 C -0.034 4.034 20 Cl -0.077 7.077 21 C -0.109 4.109 22 C -0.078 4.078 23 N -0.255 5.255 24 H 0.269 0.731 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.183 0.817 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 -12.726 -4.205 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.131 3.869 10 N -0.085 5.085 11 C -0.022 4.022 12 C -0.373 4.373 13 C 0.278 3.722 14 O -0.370 6.370 15 C -0.053 4.053 16 C 0.007 3.993 17 C -0.111 4.111 18 C -0.128 4.128 19 C -0.061 4.061 20 Cl -0.048 7.048 21 C -0.128 4.128 22 C -0.098 4.098 23 N -0.075 5.075 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.200 0.800 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.992 -11.676 -4.572 16.675 hybrid contribution 0.454 0.442 0.369 0.733 sum 11.446 -11.234 -4.203 16.580 Atomic orbital electron populations 1.69916 1.06091 1.27865 1.49069 1.24940 0.95009 0.99687 0.94217 0.86238 0.80063 0.82174 0.77891 1.19449 1.20529 1.20608 1.21211 0.94031 0.89049 1.53048 0.91070 1.20017 0.85666 0.81249 0.99995 1.49354 1.22742 1.19264 1.17123 1.23198 0.97089 0.87759 0.94130 1.22019 1.06163 1.05095 1.04017 1.22832 0.84657 0.82992 0.81759 1.90503 1.52933 1.68977 1.24613 1.21781 0.95589 0.93544 0.94373 1.17858 0.91747 0.97348 0.92373 1.21196 0.92422 0.97070 1.00374 1.20931 0.99071 1.00866 0.91940 1.21007 0.90869 1.01583 0.92652 1.98365 1.44486 1.84973 1.76948 1.20991 0.92889 0.98269 1.00608 1.21277 0.97858 0.97528 0.93104 1.77370 1.00488 1.16213 1.13448 0.92133 0.92945 0.92091 0.80019 0.89130 0.84522 0.84554 0.84644 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.06 9.20 -34.44 -0.32 -14.38 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.25 5.82 6.21 -5.19 -0.03 5.79 16 10 N -0.31 -6.50 3.61 -61.94 -0.22 -6.72 16 11 C 0.13 2.40 11.20 -16.54 -0.19 2.22 16 12 C -0.36 -5.99 6.26 -103.05 -0.65 -6.63 16 13 C 0.42 6.00 10.81 34.05 0.37 6.37 16 14 O -0.49 -8.59 17.74 5.51 0.10 -8.49 16 15 C 0.11 1.97 6.94 -80.51 -0.56 1.41 16 16 C 0.01 0.12 5.84 -104.91 -0.61 -0.49 16 17 C -0.09 -1.02 8.68 -39.24 -0.34 -1.36 16 18 C -0.11 -1.08 9.81 -39.60 -0.39 -1.47 16 19 C -0.03 -0.36 6.32 -39.42 -0.25 -0.61 16 20 Cl -0.08 -0.73 28.95 -51.86 -1.50 -2.23 16 21 C -0.11 -1.17 9.81 -39.60 -0.39 -1.56 16 22 C -0.08 -0.99 9.76 -39.24 -0.38 -1.37 16 23 N -0.25 -5.26 12.26 34.61 0.42 -4.83 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 1.41 8.05 -51.93 -0.42 0.99 16 27 H 0.18 2.86 8.06 -52.49 -0.42 2.43 16 28 H 0.09 0.98 6.22 -52.49 -0.33 0.65 16 29 H 0.14 1.32 6.41 -52.49 -0.34 0.98 16 30 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -29.24 310.18 -7.38 -36.63 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -2.74 Total: -0.65 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.83 Total: -10.48 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.94 Total: -35.02 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.10 Total: -8.49 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.24 -7.38 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003188432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.623 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds