Wall clock time and date at job start Tue Mar 31 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46871 * 2 1 4 4 C 1.42907 * 114.00054 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.46190 * 126.96534 * 90.00114 * 5 4 3 7 7 C 1.39736 * 134.17537 * 359.97438 * 6 5 4 8 8 C 1.36612 * 119.70791 * 180.02562 * 7 6 5 9 9 C 1.38845 * 120.44675 * 359.97237 * 8 7 6 10 10 C 1.37818 * 120.74691 * 0.02834 * 9 8 7 11 11 C 1.39015 * 119.85814 * 359.97438 * 10 9 8 12 12 O 1.34718 * 133.22227 * 180.02562 * 11 10 9 13 13 C 1.34962 * 110.86397 * 179.97438 * 12 11 10 14 14 C 1.46722 * 125.14883 * 180.02562 * 13 12 11 15 15 O 1.21626 * 120.00263 * 179.97438 * 14 13 12 16 16 O 1.34852 * 119.99978 * 359.97438 * 14 13 12 17 17 C 1.34821 * 117.00305 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99867 * 0.02562 * 17 16 14 19 19 C 1.38828 * 120.00316 * 179.97438 * 17 16 14 20 20 N 1.31402 * 119.99749 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47129 * 120.00139 * 21 19 17 24 24 H 1.48504 * 109.47098 * 240.00207 * 21 19 17 25 25 H 1.08997 * 109.47138 * 59.99418 * 1 2 3 26 26 H 1.08997 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46575 * 299.99792 * 1 2 3 28 28 H 1.08995 * 109.46929 * 240.00660 * 2 1 3 29 29 H 1.08997 * 109.47323 * 119.99819 * 2 1 3 30 30 H 1.08998 * 109.46634 * 60.00157 * 4 3 2 31 31 H 1.09000 * 109.46921 * 300.00308 * 4 3 2 32 32 H 1.07995 * 120.14783 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.78194 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.63173 * 179.74617 * 9 8 7 35 35 H 1.07997 * 120.06751 * 180.02562 * 10 9 8 36 36 H 0.97003 * 119.99497 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 0.0001 6 6 4.0467 3.7649 1.1686 7 6 3.9914 3.5562 2.5492 8 6 4.2669 4.5878 3.4013 9 6 4.6015 5.8405 2.9047 10 6 4.6616 6.0669 1.5465 11 6 4.3854 5.0327 0.6596 12 8 4.3637 4.9515 -0.6850 13 6 4.0317 3.7064 -1.0860 14 6 3.9163 3.2714 -2.4825 15 8 3.6104 2.1224 -2.7383 16 8 4.1495 4.1456 -3.4825 17 6 4.0269 3.6815 -4.7423 18 1 3.7524 2.6510 -4.9139 19 6 4.2522 4.5282 -5.8191 20 7 4.5856 5.7820 -5.6104 21 14 4.0816 3.8853 -7.5647 22 1 3.6994 2.4507 -7.5286 23 1 3.0327 4.6587 -8.2767 24 1 5.3763 4.0354 -8.2763 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8332 0.9768 -0.8908 31 1 3.8340 0.9765 0.8891 32 1 3.7313 2.5840 2.9408 33 1 4.2249 4.4278 4.4686 34 1 4.8128 6.6477 3.5903 35 1 4.9234 7.0455 1.1722 36 1 4.7434 6.3736 -6.3628 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003543465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:14 Heat of formation + Delta-G solvation = -93.893070 kcal Electronic energy + Delta-G solvation = -22557.558157 eV Core-core repulsion = 18974.090409 eV Total energy + Delta-G solvation = -3583.467748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20901 -38.99799 -37.74573 -37.64340 -35.45207 -33.18518 -32.35644 -31.03302 -30.29641 -29.55544 -26.61997 -25.43821 -23.71073 -22.60557 -22.48756 -20.87239 -19.74598 -18.06321 -17.70793 -16.98143 -16.51711 -16.10414 -15.82055 -15.56614 -15.26824 -14.46287 -14.35883 -14.33519 -14.17467 -13.72445 -13.44306 -12.82092 -12.59116 -12.47822 -12.16691 -12.02318 -11.75207 -11.71633 -11.37155 -11.23556 -11.03135 -10.78539 -10.62113 -10.48916 -10.04404 -9.85889 -9.59034 -9.08436 -8.75822 -8.51420 -8.01725 -6.60426 -4.21876 0.78910 1.45897 2.01572 2.82951 3.06986 3.11789 3.19568 3.69988 3.77273 3.77989 4.18274 4.26035 4.73811 4.87520 4.97435 5.00210 5.11282 5.17178 5.28900 5.33915 5.45640 5.49015 5.52324 5.64054 5.78695 5.90380 6.00275 6.09435 6.10954 6.21082 6.36515 6.47602 6.49521 6.54051 6.79053 7.20694 7.35679 7.46354 7.73218 8.46324 8.85591 9.61200 10.55761 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.005250 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.247189 B = 5331.727493 C = 7199.779747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.378 6.378 4 C 0.136 3.864 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.066 4.066 8 C -0.141 4.141 9 C -0.098 4.098 10 C -0.104 4.104 11 C 0.059 3.941 12 O -0.166 6.166 13 C 0.073 3.927 14 C 0.453 3.547 15 O -0.523 6.523 16 O -0.188 6.188 17 C -0.373 4.373 18 H 0.104 0.896 19 C 0.043 3.957 20 N -0.844 5.844 21 Si 0.950 3.050 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -4.606 14.909 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.298 6.298 4 C 0.060 3.940 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.084 4.084 8 C -0.159 4.159 9 C -0.116 4.116 10 C -0.122 4.122 11 C 0.010 3.990 12 O -0.066 6.066 13 C 0.023 3.977 14 C 0.301 3.699 15 O -0.423 6.423 16 O -0.093 6.093 17 C -0.448 4.448 18 H 0.122 0.878 19 C -0.164 4.164 20 N -0.479 5.479 21 Si 0.773 3.227 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.692 -4.288 14.502 15.217 hybrid contribution 0.100 -0.380 -0.733 0.832 sum -1.592 -4.668 13.769 14.625 Atomic orbital electron populations 1.21722 0.94059 1.01786 1.03111 1.22397 0.95366 0.84198 0.99855 1.87955 1.20484 1.25981 1.95400 1.20648 0.81881 0.90064 1.01389 1.20683 1.07044 0.96290 0.89524 1.19690 1.04993 0.93092 0.94071 1.20261 0.98375 0.99516 0.90259 1.20698 1.02479 0.93040 0.99647 1.20894 0.99610 0.97456 0.93623 1.19997 1.03804 0.97319 0.91122 1.19801 1.01681 0.95905 0.81582 1.84251 1.71821 1.30283 1.20239 1.21253 1.01369 0.81929 0.93114 1.18922 0.82813 0.84806 0.83331 1.90709 1.50078 1.19042 1.82434 1.83987 1.70633 1.39395 1.15321 1.21518 1.47375 0.98310 0.77605 0.87809 1.25521 0.95678 0.94998 1.00232 1.70013 1.40584 1.04490 1.32845 0.85508 0.78433 0.79396 0.79331 1.18587 1.19856 1.19866 0.91662 0.91404 0.92188 0.93061 0.93959 0.89819 0.93002 0.85686 0.85523 0.84922 0.84790 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.82 6.66 37.16 0.25 1.06 16 3 O -0.38 -6.90 10.33 -35.23 -0.36 -7.26 16 4 C 0.14 2.42 5.86 36.00 0.21 2.63 16 5 C -0.13 -2.65 6.02 -102.24 -0.62 -3.27 16 6 C -0.12 -2.06 6.37 -105.19 -0.67 -2.73 16 7 C -0.07 -0.90 10.06 -39.61 -0.40 -1.30 16 8 C -0.14 -1.59 9.98 -39.94 -0.40 -1.99 16 9 C -0.10 -1.11 10.01 -39.51 -0.40 -1.51 16 10 C -0.10 -1.49 10.07 -39.45 -0.40 -1.88 16 11 C 0.06 1.08 7.41 -38.34 -0.28 0.80 16 12 O -0.17 -3.69 10.60 1.89 0.02 -3.67 16 13 C 0.07 1.69 7.10 -36.97 -0.26 1.42 16 14 C 0.45 12.03 7.87 34.16 0.27 12.30 16 15 O -0.52 -14.06 13.87 -19.36 -0.27 -14.32 16 16 O -0.19 -5.58 9.75 -23.73 -0.23 -5.81 16 17 C -0.37 -10.92 9.65 30.95 0.30 -10.62 16 18 H 0.10 2.99 6.86 -52.48 -0.36 2.63 16 19 C 0.04 1.18 5.50 -17.52 -0.10 1.08 16 20 N -0.84 -24.45 13.67 55.49 0.76 -23.69 16 21 Si 0.95 20.64 29.55 -169.99 -5.02 15.62 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.60 6.37 -51.93 -0.33 1.27 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -33.30 324.55 -6.38 -39.68 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.05 Total: -0.01 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.11 Total: -5.43 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.76 Total: -23.69 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.84 Total: -31.07 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.30 -6.38 -39.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003543465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.214 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds