Wall clock time and date at job start Tue Mar 31 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46871 * 2 1 4 4 C 1.42907 * 114.00054 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.46190 * 126.96534 * 90.00114 * 5 4 3 7 7 C 1.39736 * 134.17537 * 359.97438 * 6 5 4 8 8 C 1.36612 * 119.70791 * 180.02562 * 7 6 5 9 9 C 1.38845 * 120.44675 * 359.97237 * 8 7 6 10 10 C 1.37818 * 120.74691 * 0.02834 * 9 8 7 11 11 C 1.39015 * 119.85814 * 359.97438 * 10 9 8 12 12 O 1.34718 * 133.22227 * 180.02562 * 11 10 9 13 13 C 1.34962 * 110.86397 * 179.97438 * 12 11 10 14 14 C 1.46722 * 125.14883 * 180.02562 * 13 12 11 15 15 O 1.21626 * 120.00263 * 179.97438 * 14 13 12 16 16 O 1.34852 * 119.99978 * 359.97438 * 14 13 12 17 17 C 1.34821 * 117.00305 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99867 * 0.02562 * 17 16 14 19 19 C 1.38828 * 120.00316 * 179.97438 * 17 16 14 20 20 N 1.31402 * 119.99749 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47129 * 120.00139 * 21 19 17 24 24 H 1.48504 * 109.47098 * 240.00207 * 21 19 17 25 25 H 1.08997 * 109.47138 * 59.99418 * 1 2 3 26 26 H 1.08997 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46575 * 299.99792 * 1 2 3 28 28 H 1.08995 * 109.46929 * 240.00660 * 2 1 3 29 29 H 1.08997 * 109.47323 * 119.99819 * 2 1 3 30 30 H 1.08998 * 109.46634 * 60.00157 * 4 3 2 31 31 H 1.09000 * 109.46921 * 300.00308 * 4 3 2 32 32 H 1.07995 * 120.14783 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.78194 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.63173 * 179.74617 * 9 8 7 35 35 H 1.07997 * 120.06751 * 180.02562 * 10 9 8 36 36 H 0.97003 * 119.99497 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 0.0001 6 6 4.0467 3.7649 1.1686 7 6 3.9914 3.5562 2.5492 8 6 4.2669 4.5878 3.4013 9 6 4.6015 5.8405 2.9047 10 6 4.6616 6.0669 1.5465 11 6 4.3854 5.0327 0.6596 12 8 4.3637 4.9515 -0.6850 13 6 4.0317 3.7064 -1.0860 14 6 3.9163 3.2714 -2.4825 15 8 3.6104 2.1224 -2.7383 16 8 4.1495 4.1456 -3.4825 17 6 4.0269 3.6815 -4.7423 18 1 3.7524 2.6510 -4.9139 19 6 4.2522 4.5282 -5.8191 20 7 4.5856 5.7820 -5.6104 21 14 4.0816 3.8853 -7.5647 22 1 3.6994 2.4507 -7.5286 23 1 3.0327 4.6587 -8.2767 24 1 5.3763 4.0354 -8.2763 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8332 0.9768 -0.8908 31 1 3.8340 0.9765 0.8891 32 1 3.7313 2.5840 2.9408 33 1 4.2249 4.4278 4.4686 34 1 4.8128 6.6477 3.5903 35 1 4.9234 7.0455 1.1722 36 1 4.7434 6.3736 -6.3628 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003543465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:14 Heat of formation + Delta-G solvation = -115.461085 kcal Electronic energy + Delta-G solvation = -22558.493416 eV Core-core repulsion = 18974.090409 eV Total energy + Delta-G solvation = -3584.403007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.66561 -41.05667 -39.08007 -38.84846 -37.52724 -34.62418 -34.45857 -32.12971 -31.45542 -30.93419 -28.33608 -27.22881 -25.22322 -23.75805 -23.68815 -22.44235 -21.25073 -20.09161 -19.55605 -18.30434 -17.96596 -17.54440 -17.30764 -17.11863 -16.69942 -16.37205 -16.26506 -15.64529 -15.48546 -14.93037 -14.70457 -14.60531 -13.89042 -13.71046 -13.51990 -13.41380 -13.19426 -13.11762 -12.85222 -12.52530 -12.41359 -12.26027 -12.19252 -12.09673 -11.92784 -11.47025 -11.21086 -10.82618 -10.54560 -9.71750 -9.35695 -8.67605 -6.45966 -0.64208 0.31171 0.63034 1.25056 1.35750 1.38357 1.53206 1.82276 2.04220 2.51215 2.64251 2.85384 2.91403 3.43680 3.51472 3.74353 4.07072 4.11793 4.16321 4.24120 4.28961 4.34683 4.38694 4.48381 4.57292 4.68538 4.75193 4.83004 4.99607 5.01908 5.09533 5.23347 5.25589 5.35340 5.44318 5.59586 5.65897 6.01761 6.19793 6.34589 6.74143 7.50408 8.53175 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.005250 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.247189 B = 5331.727493 C = 7199.779747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.135 3.865 5 C -0.098 4.098 6 C -0.145 4.145 7 C -0.063 4.063 8 C -0.125 4.125 9 C -0.066 4.066 10 C -0.126 4.126 11 C 0.032 3.968 12 O -0.199 6.199 13 C 0.006 3.994 14 C 0.461 3.539 15 O -0.537 6.537 16 O -0.226 6.226 17 C -0.421 4.421 18 H 0.095 0.905 19 C -0.004 4.004 20 N -0.894 5.894 21 Si 1.029 2.971 22 H -0.258 1.258 23 H -0.257 1.257 24 H -0.255 1.255 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.146 0.854 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -5.237 18.694 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.326 6.326 4 C 0.059 3.941 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.081 4.081 8 C -0.143 4.143 9 C -0.084 4.084 10 C -0.144 4.144 11 C -0.016 4.016 12 O -0.101 6.101 13 C -0.043 4.043 14 C 0.309 3.691 15 O -0.436 6.436 16 O -0.134 6.134 17 C -0.496 4.496 18 H 0.112 0.888 19 C -0.205 4.205 20 N -0.530 5.530 21 Si 0.846 3.154 22 H -0.182 1.182 23 H -0.181 1.181 24 H -0.180 1.180 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.171 0.829 33 H 0.194 0.806 34 H 0.198 0.802 35 H 0.164 0.836 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.933 -4.930 18.321 19.071 hybrid contribution 0.161 -0.194 -1.389 1.411 sum -1.771 -5.123 16.933 17.779 Atomic orbital electron populations 1.21757 0.92642 1.03613 1.02339 1.22720 0.96560 0.82422 1.01011 1.87914 1.20202 1.28819 1.95623 1.20723 0.82304 0.88759 1.02325 1.21258 1.02199 0.96894 0.89727 1.19885 1.07334 0.92067 0.95268 1.20716 0.97280 1.01786 0.88286 1.21326 0.99398 0.91807 1.01753 1.21569 0.95297 0.98962 0.92542 1.20471 1.04779 0.97107 0.92050 1.20573 1.02701 0.97991 0.80297 1.84134 1.73091 1.30013 1.22883 1.20782 1.07730 0.83818 0.91935 1.19592 0.80473 0.84463 0.84530 1.90650 1.50068 1.19409 1.83478 1.84018 1.72563 1.40660 1.16118 1.21781 1.50748 0.98690 0.78387 0.88775 1.26845 0.94013 0.94949 1.04714 1.70105 1.41995 1.06020 1.34877 0.84432 0.79487 0.78853 0.72635 1.18193 1.18129 1.17956 0.93857 0.88264 0.91505 0.94015 0.90586 0.92198 0.88618 0.82912 0.80590 0.80155 0.83634 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.05 1.30 6.66 71.98 0.48 1.78 16 3 O -0.41 -14.73 10.33 -148.98 -1.54 -16.27 16 4 C 0.13 4.80 5.86 71.24 0.42 5.21 16 5 C -0.10 -4.04 6.02 -18.32 -0.11 -4.15 16 6 C -0.14 -4.95 6.37 -20.23 -0.13 -5.08 16 7 C -0.06 -1.45 10.06 22.25 0.22 -1.22 16 8 C -0.13 -2.05 9.98 22.03 0.22 -1.83 16 9 C -0.07 -1.15 10.01 22.32 0.22 -0.93 16 10 C -0.13 -3.36 10.07 22.36 0.23 -3.13 16 11 C 0.03 1.19 7.41 23.07 0.17 1.36 16 12 O -0.20 -9.60 10.60 -12.38 -0.13 -9.74 16 13 C 0.01 0.29 7.10 23.96 0.17 0.46 16 14 C 0.46 26.75 7.87 70.04 0.55 27.30 16 15 O -0.54 -31.24 13.87 19.42 0.27 -30.97 16 16 O -0.23 -14.74 9.75 12.22 0.12 -14.62 16 17 C -0.42 -26.67 9.65 67.96 0.66 -26.01 16 18 H 0.09 5.89 6.86 -2.91 -0.02 5.87 16 19 C 0.00 -0.21 5.50 84.90 0.47 0.26 16 20 N -0.89 -54.67 13.67 21.64 0.30 -54.37 16 21 Si 1.03 43.77 29.55 68.60 2.03 45.79 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 2.40 6.37 -2.39 -0.02 2.39 16 31 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -82.85 324.55 6.45 -76.40 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.10 Total: 12.33 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.31 Total: -8.55 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.30 Total: -54.37 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -1.28 Total: -71.60 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -82.85 6.45 -76.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003543465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.062 kcal (2) G-P(sol) polarization free energy of solvation -82.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds