Wall clock time and date at job start Tue Mar 31 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48496 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46889 * 299.99842 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99356 * 3 2 1 7 7 C 1.37879 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00134 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00207 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47189 * 179.97438 * 11 10 9 13 13 C 1.53122 * 109.52445 * 175.00104 * 12 11 10 14 14 C 1.53039 * 109.27606 * 177.62314 * 13 12 11 15 15 N 1.46846 * 109.52468 * 300.81546 * 14 13 12 16 16 C 1.46893 * 111.00130 * 185.84508 * 15 14 13 17 17 C 1.50696 * 109.47236 * 170.00273 * 16 15 14 18 18 C 1.38230 * 120.00309 * 89.99753 * 17 16 15 19 19 C 1.38235 * 120.00326 * 179.97438 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38240 * 120.00061 * 0.07178 * 20 19 18 22 22 C 1.38234 * 120.00081 * 359.88514 * 21 20 19 23 23 C 1.46851 * 111.19730 * 61.74282 * 15 14 13 24 24 C 1.53035 * 109.52408 * 298.25970 * 23 15 14 25 25 H 0.96996 * 120.00430 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47367 * 59.99831 * 9 7 2 27 27 H 1.09000 * 109.47416 * 300.00304 * 9 7 2 28 28 H 1.09001 * 109.47117 * 59.99505 * 11 10 9 29 29 H 1.08998 * 109.47089 * 299.99716 * 11 10 9 30 30 H 1.09001 * 109.52506 * 54.87023 * 12 11 10 31 31 H 1.08999 * 109.50576 * 57.67934 * 13 12 11 32 32 H 1.09000 * 109.52862 * 297.58110 * 13 12 11 33 33 H 1.09002 * 109.45742 * 180.79868 * 14 13 12 34 34 H 1.08994 * 109.45565 * 60.83012 * 14 13 12 35 35 H 1.09003 * 109.47526 * 49.99792 * 16 15 14 36 36 H 1.09001 * 109.47224 * 289.99946 * 16 15 14 37 37 H 1.08000 * 120.00376 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 39 39 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00107 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.00147 * 180.10835 * 22 21 20 42 42 H 1.09000 * 109.45665 * 58.27447 * 23 15 14 43 43 H 1.08992 * 109.46346 * 178.24120 * 23 15 14 44 44 H 1.08997 * 109.50221 * 299.23932 * 24 23 15 45 45 H 1.08998 * 109.50149 * 179.11704 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5854 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6481 -5.9562 0.0020 13 6 1.9946 -7.3353 0.1272 14 6 3.0778 -8.4148 0.0677 15 7 3.8044 -8.3115 -1.2042 16 6 4.7590 -9.4175 -1.3565 17 6 5.3038 -9.4209 -2.7615 18 6 6.4447 -8.7007 -3.0623 19 6 6.9447 -8.7043 -4.3510 20 6 6.3041 -9.4285 -5.3389 21 6 5.1626 -10.1480 -5.0384 22 6 4.6630 -10.1452 -3.7495 23 6 4.4794 -7.0130 -1.3260 24 6 3.4382 -5.8916 -1.3081 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 0.9459 -4.9826 -0.8894 29 1 0.9441 -4.9823 0.8906 30 1 3.3229 -5.7951 0.8427 31 1 1.2908 -7.4804 -0.6923 32 1 1.4654 -7.4028 1.0777 33 1 2.6144 -9.3986 0.1424 34 1 3.7733 -8.2773 0.8956 35 1 4.2538 -10.3632 -1.1604 36 1 5.5787 -9.2900 -0.6494 37 1 6.9455 -8.1352 -2.2904 38 1 7.8336 -8.1381 -4.5870 39 1 6.6945 -9.4311 -6.3459 40 1 4.6618 -10.7136 -5.8104 41 1 3.7722 -10.7087 -3.5143 42 1 5.1684 -6.8822 -0.4916 43 1 5.0341 -6.9786 -2.2636 44 1 2.7571 -6.0140 -2.1502 45 1 3.9407 -4.9273 -1.3828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004364357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:21 Heat of formation + Delta-G solvation = -36.263026 kcal Electronic energy + Delta-G solvation = -22434.346843 eV Core-core repulsion = 19222.762972 eV Total energy + Delta-G solvation = -3211.583870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88841 -38.64243 -36.64346 -34.25454 -32.64168 -31.32152 -31.15445 -30.60485 -27.94668 -26.62858 -24.56222 -23.28934 -22.58763 -22.22281 -21.62120 -20.95671 -19.50211 -16.95092 -16.46275 -16.03069 -15.61114 -15.50097 -15.29485 -14.86531 -14.63044 -14.36763 -14.21095 -13.70858 -13.55891 -13.30434 -13.21098 -12.85433 -12.59429 -12.36816 -12.10119 -11.90712 -11.43248 -11.33409 -11.10610 -11.09734 -11.01987 -10.84019 -10.81763 -10.32007 -10.24468 -10.09773 -9.79708 -9.06681 -9.05650 -8.95504 -8.79350 -8.35721 -8.14153 -6.09648 -4.11204 1.16068 1.24718 3.29799 3.36126 3.42677 3.50613 4.03940 4.35178 4.55496 4.65497 4.73049 4.83615 4.90645 4.93453 4.99331 5.12754 5.26763 5.27290 5.29021 5.32794 5.47711 5.51008 5.54793 5.60126 5.69085 5.81781 5.83080 5.87128 5.89057 5.98518 6.13897 6.20084 6.28156 6.30337 6.34623 6.37596 6.45223 6.56558 6.69764 6.82602 7.01678 7.07604 7.14193 7.45649 7.81328 8.17644 8.61741 9.03115 9.53736 11.02015 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002834 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.351942 B = 9875.993080 C =10726.880269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.396 6.396 11 C 0.069 3.931 12 C -0.085 4.085 13 C -0.110 4.110 14 C 0.060 3.940 15 N -0.533 5.533 16 C 0.093 3.907 17 C -0.075 4.075 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.099 4.099 23 C 0.053 3.947 24 C -0.105 4.105 25 H 0.263 0.737 26 H 0.005 0.995 27 H 0.004 0.996 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 -22.916 -5.621 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.316 6.316 11 C -0.008 4.008 12 C -0.104 4.104 13 C -0.148 4.148 14 C -0.068 4.068 15 N -0.257 5.257 16 C -0.035 4.035 17 C -0.075 4.075 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.075 4.075 24 C -0.143 4.143 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.929 -22.791 -5.974 25.568 hybrid contribution 0.541 1.001 0.620 1.296 sum 10.470 -21.790 -5.354 24.761 Atomic orbital electron populations 1.69974 1.06105 1.27020 1.50714 1.24959 0.94978 0.99447 0.95200 0.86291 0.80025 0.82628 0.77615 1.19481 1.20828 1.20856 1.21105 0.94070 0.89401 1.50573 0.91537 1.20182 0.88779 0.83638 0.95309 1.87824 1.35555 1.13004 1.95175 1.22243 0.94274 0.85364 0.98938 1.21155 0.97373 0.93217 0.98613 1.21572 0.97549 0.93465 1.02173 1.22059 0.95911 0.99377 0.89417 1.61965 1.27424 1.02151 1.34191 1.21024 0.94480 0.95383 0.92591 1.19748 0.94971 0.97253 0.95551 1.21089 0.96304 0.98928 0.96883 1.21126 1.00133 0.99460 0.93209 1.21146 0.96131 0.97645 0.99179 1.21151 0.96580 0.99715 0.96613 1.21010 0.99092 0.99016 0.92641 1.22239 0.95965 0.88464 1.00795 1.21549 0.97615 0.97662 0.97471 0.92725 0.97766 0.97845 0.94561 0.94755 0.91091 0.90965 0.91417 0.90902 0.94918 0.90061 0.94121 0.86321 0.86160 0.86301 0.86200 0.86058 0.95106 0.90479 0.91458 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.20 5.48 5.69 36.00 0.20 5.68 16 10 O -0.40 -9.74 9.93 -35.23 -0.35 -10.08 16 11 C 0.07 1.33 5.32 37.16 0.20 1.53 16 12 C -0.08 -1.31 2.49 -90.49 -0.23 -1.54 16 13 C -0.11 -1.35 5.38 -26.65 -0.14 -1.50 16 14 C 0.06 0.65 5.46 -3.83 -0.02 0.62 16 15 N -0.53 -6.13 4.65 -236.12 -1.10 -7.22 16 16 C 0.09 0.89 5.12 -4.98 -0.03 0.87 16 17 C -0.07 -0.76 4.89 -104.63 -0.51 -1.27 16 18 C -0.11 -1.12 7.88 -39.59 -0.31 -1.43 16 19 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 22 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 23 C 0.05 0.67 5.16 -3.83 -0.02 0.65 16 24 C -0.11 -1.60 5.25 -26.65 -0.14 -1.74 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 36 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.12 1.07 7.95 -52.49 -0.42 0.65 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.97 5.75 -51.93 -0.30 0.67 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -31.82 361.48 -11.12 -42.93 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.84 Total: -3.48 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.99 Total: -18.11 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: -0.36 Total: -33.74 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.35 Total: -10.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.82 -11.12 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004364357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.669 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds