Wall clock time and date at job start Tue Mar 31 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48496 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46889 * 299.99842 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99356 * 3 2 1 7 7 C 1.37879 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00134 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00207 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47189 * 179.97438 * 11 10 9 13 13 C 1.53122 * 109.52445 * 175.00104 * 12 11 10 14 14 C 1.53039 * 109.27606 * 177.62314 * 13 12 11 15 15 N 1.46846 * 109.52468 * 300.81546 * 14 13 12 16 16 C 1.46893 * 111.00130 * 185.84508 * 15 14 13 17 17 C 1.50696 * 109.47236 * 170.00273 * 16 15 14 18 18 C 1.38230 * 120.00309 * 89.99753 * 17 16 15 19 19 C 1.38235 * 120.00326 * 179.97438 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38240 * 120.00061 * 0.07178 * 20 19 18 22 22 C 1.38234 * 120.00081 * 359.88514 * 21 20 19 23 23 C 1.46851 * 111.19730 * 61.74282 * 15 14 13 24 24 C 1.53035 * 109.52408 * 298.25970 * 23 15 14 25 25 H 0.96996 * 120.00430 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47367 * 59.99831 * 9 7 2 27 27 H 1.09000 * 109.47416 * 300.00304 * 9 7 2 28 28 H 1.09001 * 109.47117 * 59.99505 * 11 10 9 29 29 H 1.08998 * 109.47089 * 299.99716 * 11 10 9 30 30 H 1.09001 * 109.52506 * 54.87023 * 12 11 10 31 31 H 1.08999 * 109.50576 * 57.67934 * 13 12 11 32 32 H 1.09000 * 109.52862 * 297.58110 * 13 12 11 33 33 H 1.09002 * 109.45742 * 180.79868 * 14 13 12 34 34 H 1.08994 * 109.45565 * 60.83012 * 14 13 12 35 35 H 1.09003 * 109.47526 * 49.99792 * 16 15 14 36 36 H 1.09001 * 109.47224 * 289.99946 * 16 15 14 37 37 H 1.08000 * 120.00376 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 39 39 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00107 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.00147 * 180.10835 * 22 21 20 42 42 H 1.09000 * 109.45665 * 58.27447 * 23 15 14 43 43 H 1.08992 * 109.46346 * 178.24120 * 23 15 14 44 44 H 1.08997 * 109.50221 * 299.23932 * 24 23 15 45 45 H 1.08998 * 109.50149 * 179.11704 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5854 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6481 -5.9562 0.0020 13 6 1.9946 -7.3353 0.1272 14 6 3.0778 -8.4148 0.0677 15 7 3.8044 -8.3115 -1.2042 16 6 4.7590 -9.4175 -1.3565 17 6 5.3038 -9.4209 -2.7615 18 6 6.4447 -8.7007 -3.0623 19 6 6.9447 -8.7043 -4.3510 20 6 6.3041 -9.4285 -5.3389 21 6 5.1626 -10.1480 -5.0384 22 6 4.6630 -10.1452 -3.7495 23 6 4.4794 -7.0130 -1.3260 24 6 3.4382 -5.8916 -1.3081 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 0.9459 -4.9826 -0.8894 29 1 0.9441 -4.9823 0.8906 30 1 3.3229 -5.7951 0.8427 31 1 1.2908 -7.4804 -0.6923 32 1 1.4654 -7.4028 1.0777 33 1 2.6144 -9.3986 0.1424 34 1 3.7733 -8.2773 0.8956 35 1 4.2538 -10.3632 -1.1604 36 1 5.5787 -9.2900 -0.6494 37 1 6.9455 -8.1352 -2.2904 38 1 7.8336 -8.1381 -4.5870 39 1 6.6945 -9.4311 -6.3459 40 1 4.6618 -10.7136 -5.8104 41 1 3.7722 -10.7087 -3.5143 42 1 5.1684 -6.8822 -0.4916 43 1 5.0341 -6.9786 -2.2636 44 1 2.7571 -6.0140 -2.1502 45 1 3.9407 -4.9273 -1.3828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004364357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:20 Heat of formation + Delta-G solvation = -54.346151 kcal Electronic energy + Delta-G solvation = -22435.130986 eV Core-core repulsion = 19222.762972 eV Total energy + Delta-G solvation = -3212.368014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73519 -39.63535 -38.33956 -35.52422 -34.72195 -32.25827 -31.92941 -31.53131 -29.75121 -28.09179 -25.70637 -24.57224 -24.12843 -23.28364 -22.76240 -21.76849 -20.65273 -18.67074 -17.63590 -17.38276 -16.98355 -16.65883 -16.40465 -16.25089 -16.10569 -15.51500 -15.34919 -15.02549 -14.72545 -14.32659 -14.23898 -14.11183 -13.64870 -13.44584 -13.26292 -13.14728 -12.92440 -12.86857 -12.74468 -12.54694 -12.19851 -12.12769 -11.89468 -11.79464 -11.57615 -11.41016 -11.21405 -11.16016 -10.87011 -10.25287 -9.75467 -9.66753 -9.22518 -8.34407 -6.47268 0.46252 0.55571 1.38614 1.40385 1.55160 2.33192 2.75536 2.99163 3.12135 3.22010 3.76536 3.83652 3.84187 3.99670 4.14341 4.20508 4.27186 4.31963 4.36407 4.40431 4.43879 4.53217 4.58800 4.64993 4.70699 4.74067 4.77690 4.81326 4.85866 4.92784 4.98039 5.05335 5.13426 5.16249 5.19048 5.21685 5.30829 5.45241 5.53544 5.60878 5.67160 5.74249 5.93518 6.11353 6.13187 6.20763 6.51459 6.80038 7.24983 8.78349 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002834 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.351942 B = 9875.993080 C =10726.880269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.209 3.791 10 O -0.408 6.408 11 C 0.061 3.939 12 C -0.078 4.078 13 C -0.103 4.103 14 C 0.062 3.938 15 N -0.541 5.541 16 C 0.096 3.904 17 C -0.088 4.088 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.110 4.110 23 C 0.064 3.936 24 C -0.102 4.102 25 H 0.271 0.729 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -23.716 -5.727 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.134 3.866 10 O -0.328 6.328 11 C -0.016 4.016 12 C -0.096 4.096 13 C -0.141 4.141 14 C -0.065 4.065 15 N -0.265 5.265 16 C -0.031 4.031 17 C -0.089 4.089 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.064 4.064 24 C -0.140 4.140 25 H 0.080 0.920 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.777 -23.624 -6.079 26.669 hybrid contribution 0.235 1.177 0.616 1.349 sum 11.012 -22.447 -5.463 25.593 Atomic orbital electron populations 1.70077 1.07798 1.28669 1.50463 1.26001 0.96001 1.03491 0.93832 0.85109 0.78627 0.77135 0.78365 1.18805 1.19551 1.19506 1.21418 0.94086 0.90836 1.52312 0.92040 1.19816 0.88635 0.84781 0.93342 1.87792 1.35492 1.14379 1.95170 1.22590 0.95878 0.83957 0.99149 1.21140 0.96265 0.93753 0.98462 1.21543 0.98004 0.91674 1.02877 1.22087 0.95415 0.99804 0.89185 1.61934 1.27979 1.01874 1.34755 1.21057 0.94360 0.95173 0.92507 1.19888 0.95285 0.97723 0.95992 1.21249 0.96652 0.99283 0.97397 1.21393 1.00754 0.99715 0.93196 1.21455 0.96108 0.97247 1.00057 1.21453 0.96689 0.99734 0.96961 1.21233 0.99531 0.99184 0.92928 1.22039 0.94961 0.88446 1.00929 1.21465 0.97950 0.97601 0.97025 0.91971 0.99854 0.99705 0.94640 0.94113 0.91549 0.91203 0.89997 0.88386 0.94482 0.88373 0.93687 0.86074 0.84835 0.84452 0.84379 0.85059 0.94934 0.90477 0.92401 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.99 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -33.60 9.43 25.60 0.24 -33.36 16 8 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 9 C 0.21 12.21 5.69 71.24 0.41 12.62 16 10 O -0.41 -20.84 9.93 -148.98 -1.48 -22.31 16 11 C 0.06 2.40 5.32 71.98 0.38 2.79 16 12 C -0.08 -2.39 2.49 -10.71 -0.03 -2.42 16 13 C -0.10 -2.39 5.38 30.65 0.16 -2.22 16 14 C 0.06 1.19 5.46 86.33 0.47 1.66 16 15 N -0.54 -11.51 4.65 -900.96 -4.19 -15.70 16 16 C 0.10 1.66 5.12 85.56 0.44 2.09 16 17 C -0.09 -1.67 4.89 -19.87 -0.10 -1.77 16 18 C -0.13 -2.41 7.88 22.27 0.18 -2.23 16 19 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 20 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 21 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 22 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 23 C 0.06 1.59 5.16 86.32 0.45 2.04 16 24 C -0.10 -3.18 5.25 30.65 0.16 -3.02 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.44 8.02 -2.39 -0.02 1.42 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 1.36 7.93 -2.39 -0.02 1.34 16 36 H 0.04 0.75 8.07 -2.39 -0.02 0.73 16 37 H 0.12 2.12 7.95 -2.91 -0.02 2.10 16 38 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 1.92 5.75 -2.39 -0.01 1.91 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.05 1.87 7.91 -2.39 -0.02 1.85 16 Total: -1.00 -68.90 361.48 1.68 -67.22 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.93 Total: 11.08 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.11 Total: -30.71 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -3.90 Total: -72.35 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.48 Total: -22.31 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.90 1.68 -67.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004364357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.873 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds