Wall clock time and date at job start Tue Mar 31 2020 03:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30834 * 125.82669 * 2 1 4 4 N 1.40075 * 108.37758 * 180.13532 * 3 2 1 5 5 C 1.46491 * 126.05870 * 179.87839 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68645 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.35886 * 107.87539 * 359.61269 * 4 3 2 15 15 C 1.50700 * 126.21905 * 180.24997 * 14 4 3 16 16 C 1.35760 * 107.55879 * 0.22518 * 14 4 3 17 17 S 1.76193 * 126.08282 * 180.02562 * 16 14 4 18 18 C 1.76197 * 99.99934 * 90.00208 * 17 16 14 19 19 N 1.32567 * 119.22565 * 359.73695 * 18 17 16 20 20 C 1.32254 * 120.73624 * 179.71853 * 19 18 17 21 21 C 1.38626 * 119.20354 * 0.54034 * 20 19 18 22 22 C 1.38636 * 118.56975 * 359.72936 * 21 20 19 23 23 N 1.32245 * 119.20246 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47397 * 270.28963 * 1 2 3 25 25 H 1.08999 * 109.46895 * 30.29249 * 1 2 3 26 26 H 1.09003 * 109.46999 * 150.28600 * 1 2 3 27 27 H 1.09004 * 109.47166 * 149.68911 * 5 4 3 28 28 H 1.08994 * 109.47507 * 29.68617 * 5 4 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.47439 * 90.00064 * 15 14 4 31 31 H 1.09001 * 109.46934 * 210.00090 * 15 14 4 32 32 H 1.09001 * 109.47011 * 329.99486 * 15 14 4 33 33 H 1.08007 * 120.39668 * 180.29077 * 20 19 18 34 34 H 1.08001 * 120.71782 * 179.75526 * 21 20 19 35 35 H 1.07999 * 120.39473 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0608 0.0000 4 7 3.6091 0.6408 -0.0031 5 6 4.7868 1.5120 -0.0067 6 6 5.1916 1.8035 -1.4288 7 1 4.6277 1.3823 -2.2480 8 6 6.2782 2.6131 -1.6841 9 7 6.9646 3.1263 -0.6865 10 14 6.7753 2.9807 -3.4467 11 1 5.6529 3.6553 -4.1472 12 1 7.9662 3.8678 -3.4504 13 1 7.1022 1.7110 -4.1440 14 6 3.6192 -0.7180 0.0037 15 6 4.8416 -1.5994 0.0087 16 6 2.3280 -1.1372 0.0058 17 16 1.7807 -2.8120 0.0149 18 6 1.6854 -3.0933 1.7517 19 7 2.0093 -2.1142 2.5847 20 6 1.9433 -2.2909 3.8937 21 6 1.5405 -3.5207 4.3908 22 6 1.2142 -4.5245 3.4919 23 7 1.2969 -4.2809 2.1947 24 1 -0.3634 0.0052 1.0276 25 1 -0.3633 0.8874 -0.5184 26 1 -0.3633 -0.8926 -0.5094 27 1 5.6079 1.0151 0.5102 28 1 4.5493 2.4461 0.5022 29 1 7.7292 3.6956 -0.8661 30 1 5.1359 -1.8067 1.0375 31 1 4.6160 -2.5364 -0.5006 32 1 5.6570 -1.0926 -0.5075 33 1 2.2040 -1.4880 4.5674 34 1 1.4817 -3.6931 5.4553 35 1 0.8964 -5.4937 3.8468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004394724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:43 Heat of formation + Delta-G solvation = 90.966757 kcal Electronic energy + Delta-G solvation = -20124.809752 eV Core-core repulsion = 17056.696501 eV Total energy + Delta-G solvation = -3068.113251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04389 -41.60223 -35.95962 -34.65328 -34.32322 -33.03312 -32.72258 -30.67966 -28.18535 -27.71682 -25.49497 -25.40206 -24.67124 -21.55967 -20.41530 -19.37648 -18.83847 -18.40854 -17.68839 -16.77293 -16.41598 -16.02579 -15.91136 -15.76030 -14.91146 -14.81467 -14.52084 -14.33072 -14.20776 -14.15477 -13.60643 -13.35573 -13.32215 -12.93730 -12.83490 -12.68449 -12.48091 -12.22333 -11.85459 -11.81416 -11.62152 -11.41795 -11.07836 -10.77137 -10.20053 -9.95892 -9.48304 -8.67762 -8.38110 -6.55483 -0.11915 0.22858 0.28059 1.01379 1.24288 1.36770 1.38435 1.47429 1.85430 1.93923 2.32315 2.78478 2.93142 3.38182 3.70219 3.75087 3.81013 3.81799 4.13910 4.28929 4.39564 4.40913 4.56437 4.63028 4.73155 4.78660 4.83544 4.88518 4.91937 5.02540 5.30464 5.43204 5.48527 5.73513 5.74865 6.06352 6.11876 6.55038 6.88385 7.00464 7.15954 8.69190 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.004214 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.093118 B = 6642.215914 C = 6841.125358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.103 3.897 3 N -0.338 5.338 4 N -0.346 5.346 5 C 0.275 3.725 6 C -0.556 4.556 7 H 0.051 0.949 8 C 0.024 3.976 9 N -0.918 5.918 10 Si 0.972 3.028 11 H -0.275 1.275 12 H -0.272 1.272 13 H -0.264 1.264 14 C 0.151 3.849 15 C -0.093 4.093 16 C -0.308 4.308 17 S 0.168 5.832 18 C 0.258 3.742 19 N -0.540 5.540 20 C 0.136 3.864 21 C -0.223 4.223 22 C 0.150 3.850 23 N -0.528 5.528 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.274 0.726 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.180 0.820 34 H 0.186 0.814 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 -15.603 8.574 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 N -0.160 5.160 4 N -0.124 5.124 5 C 0.156 3.844 6 C -0.594 4.594 7 H 0.070 0.930 8 C -0.177 4.177 9 N -0.555 5.555 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.197 1.197 13 H -0.188 1.188 14 C 0.016 3.984 15 C -0.151 4.151 16 C -0.432 4.432 17 S 0.406 5.594 18 C -0.116 4.116 19 N -0.257 5.257 20 C -0.032 4.032 21 C -0.248 4.248 22 C -0.018 4.018 23 N -0.245 5.245 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.197 0.803 34 H 0.203 0.797 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.929 -14.618 6.615 18.869 hybrid contribution 0.834 0.825 1.450 1.865 sum -9.095 -13.793 8.065 18.385 Atomic orbital electron populations 1.20262 0.84569 1.04312 1.03292 1.22847 0.98024 0.89350 0.96411 1.77237 0.87603 1.24196 1.26950 1.49436 1.05635 1.04777 1.52557 1.19233 0.78626 0.88576 0.97964 1.21388 1.14061 1.32461 0.91526 0.93035 1.25750 0.95298 0.94275 1.02383 1.70000 1.19604 1.32696 1.33237 0.85395 0.77814 0.78743 0.78502 1.20035 1.19698 1.18828 1.21933 0.97418 0.84781 0.94293 1.20588 0.92422 0.98347 1.03723 1.21190 0.93690 0.98689 1.29593 1.83746 1.79878 1.03654 0.92093 1.25881 0.94761 0.88120 1.02828 1.68974 1.17691 1.33242 1.05788 1.23727 0.90439 0.97967 0.91113 1.23173 1.02694 0.94514 1.04430 1.23959 0.89797 1.00895 0.87174 1.68550 1.16788 1.20367 1.18839 0.90346 0.90353 0.88486 0.93521 0.95873 0.91658 0.89727 0.87457 0.90741 0.80338 0.79664 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.26 71.24 0.73 -1.23 16 2 C 0.10 4.10 7.22 43.20 0.31 4.41 16 3 N -0.34 -16.18 12.56 -47.14 -0.59 -16.77 16 4 N -0.35 -16.89 3.62 -337.36 -1.22 -18.11 16 5 C 0.28 14.77 5.85 85.64 0.50 15.27 16 6 C -0.56 -31.35 9.39 25.60 0.24 -31.11 16 7 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 8 C 0.02 1.33 5.46 84.66 0.46 1.79 16 9 N -0.92 -52.11 13.29 21.45 0.28 -51.82 16 10 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 14 C 0.15 6.32 6.98 41.36 0.29 6.61 16 15 C -0.09 -3.21 9.71 71.24 0.69 -2.52 16 16 C -0.31 -11.69 4.80 22.19 0.11 -11.58 16 17 S 0.17 5.16 21.62 -56.49 -1.22 3.94 16 18 C 0.26 7.80 7.84 180.42 1.41 9.22 16 19 N -0.54 -16.80 9.17 -196.42 -1.80 -18.61 16 20 C 0.14 3.07 11.30 84.72 0.96 4.03 16 21 C -0.22 -3.43 10.16 22.46 0.23 -3.20 16 22 C 0.15 2.61 11.30 84.73 0.96 3.56 16 23 N -0.53 -13.72 10.40 -196.42 -2.04 -15.77 16 24 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.10 2.46 7.89 -2.39 -0.02 2.45 16 27 H 0.05 2.50 7.70 -2.38 -0.02 2.48 16 28 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.11 3.15 7.81 -2.39 -0.02 3.13 16 32 H 0.07 2.77 7.76 -2.39 -0.02 2.76 16 33 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -70.98 325.81 3.43 -67.55 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.11 Total: 9.21 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 6.89 Total: -4.74 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.37 Total: -121.07 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.22 Total: 3.94 kcal Total: -70.98 3.43 -67.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004394724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.518 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds