Wall clock time and date at job start Tue Mar 31 2020 03:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38364 * 119.92870 * 2 1 4 4 C 1.38361 * 120.30013 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.92227 * 180.02562 * 4 3 2 6 6 C 1.37946 * 120.15064 * 359.97438 * 4 3 2 7 7 C 1.39610 * 119.84789 * 0.02562 * 6 4 3 8 8 C 1.47756 * 120.14406 * 179.97438 * 7 6 4 9 9 N 1.31064 * 126.29947 * 0.02562 * 8 7 6 10 10 N 1.28654 * 109.42288 * 180.02562 * 9 8 7 11 11 C 1.31317 * 109.42970 * 0.02562 * 10 9 8 12 12 S 1.76204 * 126.28465 * 180.02562 * 11 10 9 13 13 C 1.81003 * 99.99787 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.46625 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00505 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99584 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00029 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47101 * 89.99544 * 18 16 14 20 20 H 1.48501 * 109.47230 * 209.99693 * 18 16 14 21 21 H 1.48504 * 109.46917 * 329.99966 * 18 16 14 22 22 O 1.34664 * 107.42981 * 359.73249 * 11 10 9 23 23 C 1.37950 * 119.92564 * 180.27894 * 2 1 3 24 24 H 1.08999 * 109.46586 * 89.99841 * 1 2 3 25 25 H 1.09005 * 109.46965 * 209.99751 * 1 2 3 26 26 H 1.08997 * 109.46776 * 330.00409 * 1 2 3 27 27 H 1.08002 * 119.84499 * 0.04263 * 3 2 1 28 28 H 1.09003 * 109.46682 * 269.97430 * 5 4 3 29 29 H 1.09001 * 109.47653 * 29.97532 * 5 4 3 30 30 H 1.09002 * 109.46966 * 149.97803 * 5 4 3 31 31 H 1.08002 * 120.07249 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47315 * 299.99774 * 13 12 11 33 33 H 1.08998 * 109.47281 * 60.00455 * 13 12 11 34 34 H 0.96998 * 119.99849 * 180.02562 * 17 16 14 35 35 H 1.08009 * 120.07638 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5809 1.2081 -0.0005 5 6 4.3242 2.5191 0.0001 6 6 4.2815 0.0198 -0.0005 7 6 3.5913 -1.1938 -0.0005 8 6 4.3351 -2.4704 -0.0011 9 7 5.6384 -2.6091 -0.0012 10 7 5.9354 -3.8609 -0.0023 11 6 4.8314 -4.5718 -0.0035 12 16 4.7236 -6.3306 -0.0047 13 6 6.4836 -6.7532 -0.0029 14 6 6.6402 -8.2521 -0.0042 15 1 5.7661 -8.8864 -0.0064 16 6 7.8994 -8.8136 -0.0027 17 7 8.9639 -8.0412 -0.0005 18 14 8.0937 -10.6715 -0.0051 19 1 8.1477 -11.1618 -1.4057 20 1 9.3498 -11.0389 0.6968 21 1 6.9378 -11.2909 0.6919 22 8 3.7966 -3.7100 0.0028 23 6 2.1952 -1.1956 -0.0058 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6537 2.1323 0.0007 28 1 4.5034 2.8356 -1.0275 29 1 3.7293 3.2739 0.5142 30 1 5.2777 2.3960 0.5138 31 1 5.3615 0.0283 -0.0005 32 1 6.9580 -6.3380 -0.8921 33 1 6.9559 -6.3391 0.8879 34 1 9.8497 -8.4363 0.0002 35 1 1.6552 -2.1310 -0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005219331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:15 Heat of formation + Delta-G solvation = 44.769630 kcal Electronic energy + Delta-G solvation = -19044.900568 eV Core-core repulsion = 15942.491308 eV Total energy + Delta-G solvation = -3102.409260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.61395 -39.70342 -35.80985 -33.84105 -33.46045 -33.30798 -30.06599 -28.71841 -27.60615 -27.00536 -24.68110 -23.48997 -23.11123 -21.22742 -20.81056 -18.25064 -17.03485 -16.84637 -16.35760 -16.15634 -15.74524 -15.16510 -14.80135 -14.33827 -13.74709 -13.48898 -13.38566 -13.25505 -12.80583 -12.64399 -12.52687 -12.26411 -12.19192 -11.98515 -11.72135 -11.61930 -11.31115 -11.10030 -10.99231 -10.82105 -10.50304 -10.33366 -9.81674 -9.43063 -8.88836 -8.85818 -8.66130 -7.14165 -6.30651 -4.40784 0.47420 1.09094 1.23142 1.73349 2.70580 2.87776 3.19933 3.21890 3.26342 3.33326 3.53011 4.21252 4.25056 4.46020 4.58694 4.86664 4.96821 5.03120 5.05934 5.09915 5.25605 5.31354 5.36892 5.37544 5.41607 5.56891 5.59912 5.67303 5.79195 5.92037 6.21235 6.26906 6.29582 6.65572 6.91872 7.03537 7.54760 7.77877 8.54126 8.60107 9.23907 10.79539 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.037889 B = 0.002898 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.817439 B = 9658.162884 C =10371.229196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.105 4.105 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.079 4.079 7 C 0.002 3.998 8 C 0.173 3.827 9 N -0.259 5.259 10 N -0.289 5.289 11 C 0.157 3.843 12 S 0.017 5.983 13 C 0.064 3.936 14 C -0.531 4.531 15 H 0.070 0.930 16 C 0.073 3.927 17 N -0.879 5.879 18 Si 0.912 3.088 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.270 1.270 22 O -0.211 6.211 23 C -0.096 4.096 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.270 0.730 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 18.018 -0.046 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.099 4.099 7 C 0.001 3.999 8 C -0.040 4.040 9 N -0.108 5.108 10 N -0.141 5.141 11 C -0.158 4.158 12 S 0.249 5.751 13 C -0.083 4.083 14 C -0.571 4.571 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.515 5.515 18 Si 0.738 3.262 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.194 1.194 22 O -0.093 6.093 23 C -0.116 4.116 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.027 17.527 -0.036 22.449 hybrid contribution 0.116 -0.508 -0.017 0.522 sum -13.910 17.019 -0.053 21.980 Atomic orbital electron populations 1.20798 0.90550 1.03065 1.02618 1.19777 0.96378 0.92426 0.99800 1.21085 0.93485 0.97665 1.00176 1.19800 0.93693 0.95104 0.99722 1.20801 1.00204 0.93351 1.02674 1.21059 1.00827 0.89763 0.98249 1.17162 0.91937 0.86274 1.04574 1.25284 0.89408 0.84872 1.04400 1.74405 1.10307 1.11096 1.14942 1.75100 1.22740 0.95966 1.20302 1.30801 0.82568 1.01698 1.00736 1.86005 1.21363 0.79239 1.88493 1.21597 0.82805 1.00751 1.03122 1.20510 0.93213 0.88278 1.55080 0.91178 1.24945 0.95036 0.99221 0.94098 1.69975 0.98337 1.35622 1.47577 0.86279 0.77982 0.83461 0.78511 1.20132 1.20743 1.19417 1.84989 1.37433 1.15469 1.71376 1.21132 0.92270 0.98688 0.99514 0.90906 0.91235 0.91307 0.85559 0.90861 0.91334 0.91073 0.84309 0.92387 0.92382 0.92055 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.08 -0.80 5.87 -104.68 -0.61 -1.42 16 3 C -0.11 -0.93 9.34 -39.49 -0.37 -1.30 16 4 C -0.08 -0.81 5.87 -104.68 -0.61 -1.42 16 5 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 6 C -0.08 -0.98 9.35 -39.18 -0.37 -1.35 16 7 C 0.00 0.04 5.87 -104.98 -0.62 -0.58 16 8 C 0.17 3.14 7.98 -13.99 -0.11 3.02 16 9 N -0.26 -5.36 11.89 32.09 0.38 -4.98 16 10 N -0.29 -6.62 11.62 30.33 0.35 -6.27 16 11 C 0.16 3.35 8.53 52.54 0.45 3.79 16 12 S 0.02 0.37 22.23 -107.50 -2.39 -2.02 16 13 C 0.06 1.64 4.98 36.01 0.18 1.82 16 14 C -0.53 -14.23 9.13 -34.44 -0.31 -14.54 16 15 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 16 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 17 N -0.88 -25.13 13.29 55.43 0.74 -24.40 16 18 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 O -0.21 -4.04 10.69 2.33 0.02 -4.02 16 23 C -0.10 -1.15 9.38 -39.18 -0.37 -1.52 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.14 1.73 7.86 -52.49 -0.41 1.32 16 32 H 0.06 1.58 8.14 -51.92 -0.42 1.16 16 33 H 0.06 1.58 8.14 -51.92 -0.42 1.16 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.13 1.49 7.93 -52.48 -0.42 1.07 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -30.15 327.13 -7.27 -37.42 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.16 Total: -3.72 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -2.12 Total: -12.42 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 1.47 Total: -35.65 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.02 Total: -4.02 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.39 Total: -2.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.15 -7.27 -37.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005219331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.188 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds