Wall clock time and date at job start Tue Mar 31 2020 03:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38364 * 119.92870 * 2 1 4 4 C 1.38361 * 120.30013 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.92227 * 180.02562 * 4 3 2 6 6 C 1.37946 * 120.15064 * 359.97438 * 4 3 2 7 7 C 1.39610 * 119.84789 * 0.02562 * 6 4 3 8 8 C 1.47756 * 120.14406 * 179.97438 * 7 6 4 9 9 N 1.31064 * 126.29947 * 0.02562 * 8 7 6 10 10 N 1.28654 * 109.42288 * 180.02562 * 9 8 7 11 11 C 1.31317 * 109.42970 * 0.02562 * 10 9 8 12 12 S 1.76204 * 126.28465 * 180.02562 * 11 10 9 13 13 C 1.81003 * 99.99787 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.46625 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00505 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99584 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00029 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47101 * 89.99544 * 18 16 14 20 20 H 1.48501 * 109.47230 * 209.99693 * 18 16 14 21 21 H 1.48504 * 109.46917 * 329.99966 * 18 16 14 22 22 O 1.34664 * 107.42981 * 359.73249 * 11 10 9 23 23 C 1.37950 * 119.92564 * 180.27894 * 2 1 3 24 24 H 1.08999 * 109.46586 * 89.99841 * 1 2 3 25 25 H 1.09005 * 109.46965 * 209.99751 * 1 2 3 26 26 H 1.08997 * 109.46776 * 330.00409 * 1 2 3 27 27 H 1.08002 * 119.84499 * 0.04263 * 3 2 1 28 28 H 1.09003 * 109.46682 * 269.97430 * 5 4 3 29 29 H 1.09001 * 109.47653 * 29.97532 * 5 4 3 30 30 H 1.09002 * 109.46966 * 149.97803 * 5 4 3 31 31 H 1.08002 * 120.07249 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47315 * 299.99774 * 13 12 11 33 33 H 1.08998 * 109.47281 * 60.00455 * 13 12 11 34 34 H 0.96998 * 119.99849 * 180.02562 * 17 16 14 35 35 H 1.08009 * 120.07638 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5809 1.2081 -0.0005 5 6 4.3242 2.5191 0.0001 6 6 4.2815 0.0198 -0.0005 7 6 3.5913 -1.1938 -0.0005 8 6 4.3351 -2.4704 -0.0011 9 7 5.6384 -2.6091 -0.0012 10 7 5.9354 -3.8609 -0.0023 11 6 4.8314 -4.5718 -0.0035 12 16 4.7236 -6.3306 -0.0047 13 6 6.4836 -6.7532 -0.0029 14 6 6.6402 -8.2521 -0.0042 15 1 5.7661 -8.8864 -0.0064 16 6 7.8994 -8.8136 -0.0027 17 7 8.9639 -8.0412 -0.0005 18 14 8.0937 -10.6715 -0.0051 19 1 8.1477 -11.1618 -1.4057 20 1 9.3498 -11.0389 0.6968 21 1 6.9378 -11.2909 0.6919 22 8 3.7966 -3.7100 0.0028 23 6 2.1952 -1.1956 -0.0058 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6537 2.1323 0.0007 28 1 4.5034 2.8356 -1.0275 29 1 3.7293 3.2739 0.5142 30 1 5.2777 2.3960 0.5138 31 1 5.3615 0.0283 -0.0005 32 1 6.9580 -6.3380 -0.8921 33 1 6.9559 -6.3391 0.8879 34 1 9.8497 -8.4363 0.0002 35 1 1.6552 -2.1310 -0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005219331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:15 Heat of formation + Delta-G solvation = 24.722505 kcal Electronic energy + Delta-G solvation = -19045.769876 eV Core-core repulsion = 15942.491308 eV Total energy + Delta-G solvation = -3103.278568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.20601 -40.55989 -37.41677 -35.38872 -34.58802 -34.51383 -31.49284 -30.73540 -28.24757 -27.79194 -26.13411 -25.06167 -25.02822 -22.43427 -21.60492 -19.89719 -18.64222 -18.50676 -17.90005 -17.29151 -16.86091 -16.60727 -16.30725 -15.27534 -15.04094 -14.67437 -14.51311 -14.43142 -14.09778 -13.97202 -13.72463 -13.33740 -13.25035 -13.01300 -12.98636 -12.82469 -12.74421 -12.67824 -12.47041 -12.21071 -12.03535 -11.71959 -11.69871 -11.37960 -10.78725 -9.87684 -9.67684 -8.82627 -8.37195 -6.56370 -0.72953 -0.46021 0.25452 0.37103 1.17211 1.23452 1.42924 1.44867 1.54223 1.59435 2.34823 2.61641 2.93360 2.98125 3.61572 3.71846 3.76271 3.93080 4.03609 4.09741 4.24752 4.34234 4.56903 4.64951 4.76974 4.82901 4.85121 4.87429 4.90421 4.93172 5.16779 5.26333 5.33063 5.45955 5.46607 5.50858 5.70158 5.86936 6.52337 6.94324 7.14138 8.74891 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.037889 B = 0.002898 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.817439 B = 9658.162884 C =10371.229196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.082 4.082 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.036 4.036 8 C 0.201 3.799 9 N -0.296 5.296 10 N -0.320 5.320 11 C 0.138 3.862 12 S 0.069 5.931 13 C 0.064 3.936 14 C -0.548 4.548 15 H 0.081 0.919 16 C 0.019 3.981 17 N -0.921 5.921 18 Si 0.985 3.015 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.257 1.257 22 O -0.207 6.207 23 C -0.101 4.101 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.165 0.835 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.273 0.727 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 19.485 -0.049 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.107 4.107 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.109 4.109 7 C -0.038 4.038 8 C -0.011 4.011 9 N -0.142 5.142 10 N -0.172 5.172 11 C -0.178 4.178 12 S 0.300 5.700 13 C -0.084 4.084 14 C -0.587 4.587 15 H 0.099 0.901 16 C -0.183 4.183 17 N -0.558 5.558 18 Si 0.807 3.193 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.181 1.181 22 O -0.089 6.089 23 C -0.121 4.121 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.183 0.817 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.796 19.030 -0.040 25.382 hybrid contribution 0.807 -0.638 -0.018 1.029 sum -15.989 18.392 -0.059 24.371 Atomic orbital electron populations 1.20884 0.88084 1.04281 1.03692 1.20163 0.98083 0.91637 0.98251 1.21582 0.93100 0.98943 0.97086 1.20150 0.94496 0.95116 0.98422 1.20884 1.00187 0.92241 1.03668 1.21146 1.00608 0.90322 0.98867 1.17390 0.92951 0.84829 1.08618 1.26193 0.89070 0.85574 1.00285 1.74347 1.11756 1.10113 1.17972 1.75016 1.24072 0.97207 1.20914 1.30705 0.82922 1.01999 1.02185 1.85482 1.16444 0.78989 1.89079 1.21213 0.86287 1.00543 1.00324 1.20896 0.93950 0.88866 1.55007 0.90144 1.26005 0.94552 1.04588 0.93198 1.70113 0.99019 1.38075 1.48570 0.85146 0.78290 0.76885 0.78937 1.19215 1.20338 1.18082 1.84984 1.36731 1.15704 1.71478 1.21277 0.91232 1.00085 0.99530 0.89766 0.91136 0.89091 0.81708 0.89802 0.88933 0.91386 0.85434 0.95310 0.95307 0.91785 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.36 16 2 C -0.08 -1.30 5.87 -19.90 -0.12 -1.42 16 3 C -0.09 -1.20 9.34 22.33 0.21 -1.00 16 4 C -0.08 -1.39 5.87 -19.90 -0.12 -1.51 16 5 C -0.11 -1.24 10.01 71.24 0.71 -0.52 16 6 C -0.09 -2.20 9.35 22.53 0.21 -1.99 16 7 C -0.04 -1.03 5.87 -20.10 -0.12 -1.14 16 8 C 0.20 7.56 7.98 87.33 0.70 8.25 16 9 N -0.30 -12.90 11.89 -166.15 -1.98 -14.88 16 10 N -0.32 -15.57 11.62 -171.86 -2.00 -17.57 16 11 C 0.14 6.15 8.53 130.32 1.11 7.26 16 12 S 0.07 2.99 22.23 -56.49 -1.26 1.74 16 13 C 0.06 3.46 4.98 71.24 0.35 3.81 16 14 C -0.55 -30.00 9.13 25.60 0.23 -29.77 16 15 H 0.08 4.14 7.71 -2.91 -0.02 4.12 16 16 C 0.02 1.05 5.46 84.65 0.46 1.51 16 17 N -0.92 -54.37 13.29 21.45 0.28 -54.09 16 18 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 O -0.21 -8.16 10.69 -14.58 -0.16 -8.32 16 23 C -0.10 -2.30 9.38 22.53 0.21 -2.09 16 24 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.69 8.09 -2.38 -0.02 0.67 16 26 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 27 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.13 3.33 7.86 -2.91 -0.02 3.30 16 32 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.68 8.14 -2.40 -0.02 1.66 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.13 2.89 7.93 -2.91 -0.02 2.86 16 Total: -1.00 -68.65 327.13 2.59 -66.05 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.10 Total: 1.91 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.56 Total: -18.96 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.69 Total: -86.54 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.16 Total: -8.32 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.26 Total: 1.74 kcal Total: -68.65 2.59 -66.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005219331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.775 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds