Wall clock time and date at job start Tue Mar 31 2020 03:18:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 120.00129 * 2 1
4 4 H 1.48500 * 109.47393 * 269.99794 * 3 2 1
5 5 H 1.48500 * 109.46999 * 30.00218 * 3 2 1
6 6 H 1.48499 * 109.46899 * 149.99887 * 3 2 1
7 7 C 1.38699 * 119.99699 * 180.02562 * 2 1 3
8 8 H 1.08007 * 120.00399 * 0.02562 * 7 2 1
9 9 O 1.34777 * 119.99965 * 179.97438 * 7 2 1
10 10 C 1.35525 * 116.99993 * 174.94051 * 9 7 2
11 11 C 1.38746 * 120.17936 * 5.62595 * 10 9 7
12 12 C 1.38084 * 120.10132 * 180.27959 * 11 10 9
13 13 C 1.38621 * 120.47215 * 359.74280 * 12 11 10
14 14 C 1.37757 * 120.35740 * 359.97438 * 13 12 11
15 15 C 1.39986 * 119.88224 * 0.02562 * 14 13 12
16 16 C 1.46726 * 120.22918 * 179.97438 * 15 14 13
17 17 C 1.35798 * 119.99576 * 334.09213 * 16 15 14
18 18 N 1.40000 * 127.39663 * 352.66500 * 17 16 15
19 19 C 1.34467 * 107.78480 * 179.97438 * 18 17 16
20 20 S 1.71196 * 124.48129 * 179.97438 * 19 18 17
21 21 N 1.34184 * 111.03474 * 359.97438 * 19 18 17
22 22 C 1.34848 * 109.80730 * 0.02562 * 21 19 18
23 23 O 1.21721 * 126.91773 * 180.02562 * 22 21 19
24 24 H 0.97001 * 120.00250 * 0.02562 * 1 2 3
25 25 H 1.07996 * 119.94796 * 0.04475 * 11 10 9
26 26 H 1.08002 * 119.76314 * 179.76856 * 12 11 10
27 27 H 1.08002 * 119.82646 * 180.02562 * 13 12 11
28 28 H 1.07993 * 120.05784 * 179.97438 * 14 13 12
29 29 H 1.07996 * 120.00177 * 154.09099 * 16 15 14
30 30 H 0.97003 * 126.10961 * 359.71595 * 18 17 16
31 31 H 0.96998 * 125.09905 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0464 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0086 -1.2012 -0.0005
8 1 1.4686 -2.1366 -0.0014
9 8 3.3563 -1.2013 -0.0011
10 6 3.9716 -2.4041 0.1049
11 6 3.2247 -3.5733 0.0904
12 6 3.8527 -4.7978 0.2043
13 6 5.2313 -4.8719 0.3285
14 6 5.9921 -3.7235 0.3393
15 6 5.3709 -2.4743 0.2248
16 6 6.1738 -1.2462 0.2359
17 6 7.3812 -1.2301 0.8573
18 7 7.9436 -2.2386 1.6489
19 6 9.1486 -1.8104 2.0646
20 16 10.2066 -2.7133 3.0627
21 7 9.4121 -0.5820 1.5935
22 6 8.3793 -0.1495 0.8420
23 8 8.2911 0.9194 0.2664
24 1 -0.4850 0.8400 -0.0004
25 1 2.1501 -3.5254 -0.0063
26 1 3.2656 -5.7043 0.1962
27 1 5.7118 -5.8352 0.4165
28 1 7.0658 -3.7868 0.4367
29 1 5.8046 -0.3552 -0.2499
30 1 7.5352 -3.0921 1.8627
31 1 10.2238 -0.0802 1.7674
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000008306353.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:17
Heat of formation + Delta-G solvation = 28.091403 kcal
Electronic energy + Delta-G solvation = -19823.148385 eV
Core-core repulsion = 16584.182809 eV
Total energy + Delta-G solvation = -3238.965576 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 290.051 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.65741 -39.81339 -38.04128 -37.23739 -35.02552 -32.98367 -32.45700 -29.97691
-29.33693 -26.05961 -25.70150 -23.82728 -22.59082 -21.42814 -20.78681 -19.07970
-18.40957 -17.71782 -16.79238 -16.65262 -16.53000 -15.96346 -15.44159 -15.19649
-14.55448 -14.39602 -14.16616 -13.88006 -13.48147 -13.05050 -12.84008 -12.61484
-12.11868 -11.74381 -11.52204 -11.35743 -11.23458 -11.12890 -10.69578 -10.51283
-9.93168 -9.75126 -9.31182 -8.67468 -8.13308 -7.93150 -7.49350 -6.89946
-4.52134 -0.18751 1.23372 1.49234 1.76485 1.96537 2.61891 2.68561
2.77691 2.97225 3.01115 3.11924 3.79328 3.85787 3.99586 4.16811
4.65243 4.81569 4.90254 5.06354 5.24335 5.31678 5.54847 5.64493
5.85804 5.92265 5.98249 6.15662 6.34967 6.58236 6.62784 6.77911
6.83573 7.06117 7.27608 7.36016 7.51223 8.40227 8.94707 10.14417
Molecular weight = 290.05amu
Principal moments of inertia in cm(-1)
A = 0.016460 B = 0.005235 C = 0.004154
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1700.692337 B = 5347.561231 C = 6739.471406
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.850 5.850
2 C 0.071 3.929
3 Si 0.903 3.097
4 H -0.266 1.266
5 H -0.276 1.276
6 H -0.254 1.254
7 C -0.390 4.390
8 H 0.115 0.885
9 O -0.185 6.185
10 C 0.185 3.815
11 C -0.213 4.213
12 C -0.047 4.047
13 C -0.202 4.202
14 C -0.060 4.060
15 C -0.188 4.188
16 C 0.093 3.907
17 C -0.100 4.100
18 N -0.577 5.577
19 C 0.534 3.466
20 S -0.587 6.587
21 N -0.630 5.630
22 C 0.551 3.449
23 O -0.469 6.469
24 H 0.289 0.711
25 H 0.142 0.858
26 H 0.120 0.880
27 H 0.119 0.881
28 H 0.119 0.881
29 H 0.160 0.840
30 H 0.450 0.550
31 H 0.444 0.556
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.669 -3.886 -0.299 9.505
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.483 5.483
2 C -0.137 4.137
3 Si 0.727 3.273
4 H -0.191 1.191
5 H -0.201 1.201
6 H -0.178 1.178
7 C -0.464 4.464
8 H 0.132 0.868
9 O -0.086 6.086
10 C 0.128 3.872
11 C -0.232 4.232
12 C -0.066 4.066
13 C -0.221 4.221
14 C -0.079 4.079
15 C -0.190 4.190
16 C 0.068 3.932
17 C -0.200 4.200
18 N -0.206 5.206
19 C 0.178 3.822
20 S -0.454 6.454
21 N -0.279 5.279
22 C 0.340 3.660
23 O -0.342 6.342
24 H 0.099 0.901
25 H 0.160 0.840
26 H 0.138 0.862
27 H 0.137 0.863
28 H 0.136 0.864
29 H 0.177 0.823
30 H 0.299 0.701
31 H 0.289 0.711
Dipole moment (debyes) X Y Z Total
from point charges 8.963 -3.414 -0.091 9.592
hybrid contribution -0.321 0.883 -0.356 1.004
sum 8.643 -2.531 -0.447 9.017
Atomic orbital electron populations
1.69596 1.05826 1.29694 1.43185 1.24582 0.95135 0.99379 0.94633
0.86206 0.80597 0.80800 0.79736 1.19107 1.20066 1.17809 1.20949
0.76128 0.97240 1.52070 0.86758 1.83442 1.23433 1.26181 1.75514
1.19132 0.90315 0.85610 0.92130 1.21337 1.01619 0.91555 1.08708
1.21102 0.94357 0.97083 0.94026 1.20686 0.94014 0.97665 1.09699
1.21028 0.98395 0.91361 0.97076 1.17802 0.90441 0.92214 1.18581
1.21983 0.86898 0.97564 0.86755 1.20054 0.99254 0.91339 1.09389
1.43627 1.14554 1.19185 1.43250 1.22611 0.87488 0.85358 0.86703
1.93572 1.48847 1.60572 1.42427 1.44064 1.21870 1.15963 1.46029
1.18484 0.82266 0.86647 0.78615 1.90962 1.78315 1.22147 1.42781
0.90080 0.84021 0.86214 0.86255 0.86379 0.82302 0.70057 0.71117
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -21.44 13.96 55.48 0.77 -20.67 16
2 C 0.07 1.72 5.49 -17.52 -0.10 1.62 16
3 Si 0.90 18.86 28.62 -169.99 -4.86 14.00 16
4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16
6 H -0.25 -5.31 7.11 56.52 0.40 -4.90 16
7 C -0.39 -9.23 9.95 30.90 0.31 -8.92 16
8 H 0.12 2.74 5.44 -52.48 -0.29 2.46 16
9 O -0.18 -3.97 7.94 0.89 0.01 -3.96 16
10 C 0.19 3.41 6.67 -38.50 -0.26 3.16 16
11 C -0.21 -3.62 9.16 -39.45 -0.36 -3.98 16
12 C -0.05 -0.65 10.03 -39.50 -0.40 -1.04 16
13 C -0.20 -2.56 10.02 -39.62 -0.40 -2.95 16
14 C -0.06 -0.79 8.28 -39.10 -0.32 -1.11 16
15 C -0.19 -2.93 5.80 -104.92 -0.61 -3.54 16
16 C 0.09 1.37 9.51 -37.03 -0.35 1.02 16
17 C -0.10 -1.36 6.67 -81.40 -0.54 -1.90 16
18 N -0.58 -7.15 5.19 -10.15 -0.05 -7.20 16
19 C 0.53 7.02 8.09 -87.73 -0.71 6.31 16
20 S -0.59 -9.36 31.19 -107.50 -3.35 -12.71 16
21 N -0.63 -7.40 5.85 -14.16 -0.08 -7.48 16
22 C 0.55 7.61 8.55 -12.63 -0.11 7.50 16
23 O -0.47 -7.63 18.05 5.17 0.09 -7.54 16
24 H 0.29 6.71 8.31 -40.82 -0.34 6.37 16
25 H 0.14 2.52 5.64 -52.49 -0.30 2.23 16
26 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16
27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16
28 H 0.12 1.31 5.54 -52.49 -0.29 1.02 16
29 H 0.16 2.40 7.90 -52.49 -0.41 1.99 16
30 H 0.45 5.09 6.17 -40.82 -0.25 4.84 16
31 H 0.44 4.15 8.96 -40.82 -0.37 3.78 16
LS Contribution 294.41 15.07 4.44 4.44
Total: -1.00 -27.06 294.41 -8.77 -35.83
By element:
Atomic # 1 Polarization: 11.04 SS G_CDS: -1.88 Total: 9.15 kcal
Atomic # 6 Polarization: -0.01 SS G_CDS: -3.84 Total: -3.86 kcal
Atomic # 7 Polarization: -35.99 SS G_CDS: 0.64 Total: -35.35 kcal
Atomic # 8 Polarization: -11.60 SS G_CDS: 0.10 Total: -11.50 kcal
Atomic # 14 Polarization: 18.86 SS G_CDS: -4.86 Total: 14.00 kcal
Atomic # 16 Polarization: -9.36 SS G_CDS: -3.35 Total: -12.71 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -27.06 -8.77 -35.83 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000008306353.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.922 kcal
(2) G-P(sol) polarization free energy of solvation -27.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.863 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.091 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds