Wall clock time and date at job start Tue Mar 31 2020 03:18:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 120.00129 * 2 1
4 4 H 1.48500 * 109.47393 * 269.99794 * 3 2 1
5 5 H 1.48500 * 109.46999 * 30.00218 * 3 2 1
6 6 H 1.48499 * 109.46899 * 149.99887 * 3 2 1
7 7 C 1.38699 * 119.99699 * 180.02562 * 2 1 3
8 8 H 1.08007 * 120.00399 * 0.02562 * 7 2 1
9 9 O 1.34777 * 119.99965 * 179.97438 * 7 2 1
10 10 C 1.35525 * 116.99993 * 174.94051 * 9 7 2
11 11 C 1.38746 * 120.17936 * 5.62595 * 10 9 7
12 12 C 1.38084 * 120.10132 * 180.27959 * 11 10 9
13 13 C 1.38621 * 120.47215 * 359.74280 * 12 11 10
14 14 C 1.37757 * 120.35740 * 359.97438 * 13 12 11
15 15 C 1.39986 * 119.88224 * 0.02562 * 14 13 12
16 16 C 1.46726 * 120.22918 * 179.97438 * 15 14 13
17 17 C 1.35798 * 119.99576 * 334.09213 * 16 15 14
18 18 N 1.40000 * 127.39663 * 352.66500 * 17 16 15
19 19 C 1.34467 * 107.78480 * 179.97438 * 18 17 16
20 20 S 1.71196 * 124.48129 * 179.97438 * 19 18 17
21 21 N 1.34184 * 111.03474 * 359.97438 * 19 18 17
22 22 C 1.34848 * 109.80730 * 0.02562 * 21 19 18
23 23 O 1.21721 * 126.91773 * 180.02562 * 22 21 19
24 24 H 0.97001 * 120.00250 * 0.02562 * 1 2 3
25 25 H 1.07996 * 119.94796 * 0.04475 * 11 10 9
26 26 H 1.08002 * 119.76314 * 179.76856 * 12 11 10
27 27 H 1.08002 * 119.82646 * 180.02562 * 13 12 11
28 28 H 1.07993 * 120.05784 * 179.97438 * 14 13 12
29 29 H 1.07996 * 120.00177 * 154.09099 * 16 15 14
30 30 H 0.97003 * 126.10961 * 359.71595 * 18 17 16
31 31 H 0.96998 * 125.09905 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0464 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0086 -1.2012 -0.0005
8 1 1.4686 -2.1366 -0.0014
9 8 3.3563 -1.2013 -0.0011
10 6 3.9716 -2.4041 0.1049
11 6 3.2247 -3.5733 0.0904
12 6 3.8527 -4.7978 0.2043
13 6 5.2313 -4.8719 0.3285
14 6 5.9921 -3.7235 0.3393
15 6 5.3709 -2.4743 0.2248
16 6 6.1738 -1.2462 0.2359
17 6 7.3812 -1.2301 0.8573
18 7 7.9436 -2.2386 1.6489
19 6 9.1486 -1.8104 2.0646
20 16 10.2066 -2.7133 3.0627
21 7 9.4121 -0.5820 1.5935
22 6 8.3793 -0.1495 0.8420
23 8 8.2911 0.9194 0.2664
24 1 -0.4850 0.8400 -0.0004
25 1 2.1501 -3.5254 -0.0063
26 1 3.2656 -5.7043 0.1962
27 1 5.7118 -5.8352 0.4165
28 1 7.0658 -3.7868 0.4367
29 1 5.8046 -0.3552 -0.2499
30 1 7.5352 -3.0921 1.8627
31 1 10.2238 -0.0802 1.7674
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000008306353.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:17
Heat of formation + Delta-G solvation = 11.849966 kcal
Electronic energy + Delta-G solvation = -19823.852667 eV
Core-core repulsion = 16584.182809 eV
Total energy + Delta-G solvation = -3239.669858 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 290.051 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-43.84084 -41.15864 -39.29757 -38.55749 -36.20376 -34.60629 -33.69264 -31.21099
-30.61615 -27.52064 -27.02682 -24.98132 -23.86493 -22.69404 -21.97468 -20.38357
-19.84177 -19.10742 -17.96611 -17.83714 -17.69571 -17.19946 -16.79642 -16.53430
-15.99496 -15.74460 -15.46359 -15.21260 -14.70612 -14.46202 -14.19177 -14.14378
-13.41708 -12.97390 -12.81164 -12.71248 -12.54288 -12.43720 -12.11786 -11.89187
-11.45420 -11.01252 -10.92970 -9.88542 -9.42499 -9.20189 -8.78032 -8.59718
-6.30618 -1.37773 0.05966 0.28417 0.51451 0.78502 1.32797 1.33800
1.45614 1.47513 1.54415 1.62625 2.20013 2.58447 2.66906 2.77801
3.01915 3.58340 3.73341 3.88738 4.10529 4.15615 4.34647 4.46699
4.61964 4.75406 4.93344 4.95638 5.17759 5.29021 5.41841 5.54256
5.63033 5.72805 5.76803 6.03640 6.23395 6.73114 7.38660 8.50020
Molecular weight = 290.05amu
Principal moments of inertia in cm(-1)
A = 0.016460 B = 0.005235 C = 0.004154
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1700.692337 B = 5347.561231 C = 6739.471406
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.908 5.908
2 C 0.023 3.977
3 Si 0.954 3.046
4 H -0.264 1.264
5 H -0.272 1.272
6 H -0.256 1.256
7 C -0.399 4.399
8 H 0.093 0.907
9 O -0.219 6.219
10 C 0.162 3.838
11 C -0.237 4.237
12 C -0.040 4.040
13 C -0.178 4.178
14 C -0.058 4.058
15 C -0.179 4.179
16 C 0.085 3.915
17 C -0.074 4.074
18 N -0.568 5.568
19 C 0.555 3.445
20 S -0.621 6.621
21 N -0.613 5.613
22 C 0.559 3.441
23 O -0.485 6.485
24 H 0.288 0.712
25 H 0.121 0.879
26 H 0.151 0.849
27 H 0.162 0.838
28 H 0.148 0.852
29 H 0.155 0.845
30 H 0.457 0.543
31 H 0.458 0.542
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.353 -5.549 0.119 13.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.178 4.178
3 Si 0.777 3.223
4 H -0.189 1.189
5 H -0.197 1.197
6 H -0.179 1.179
7 C -0.475 4.475
8 H 0.111 0.889
9 O -0.124 6.124
10 C 0.110 3.890
11 C -0.256 4.256
12 C -0.058 4.058
13 C -0.196 4.196
14 C -0.076 4.076
15 C -0.181 4.181
16 C 0.061 3.939
17 C -0.175 4.175
18 N -0.198 5.198
19 C 0.198 3.802
20 S -0.488 6.488
21 N -0.263 5.263
22 C 0.347 3.653
23 O -0.359 6.359
24 H 0.098 0.902
25 H 0.139 0.861
26 H 0.169 0.831
27 H 0.180 0.820
28 H 0.165 0.835
29 H 0.172 0.828
30 H 0.309 0.691
31 H 0.305 0.695
Dipole moment (debyes) X Y Z Total
from point charges 12.721 -5.127 0.339 13.720
hybrid contribution -0.925 1.049 -0.413 1.458
sum 11.796 -4.078 -0.074 12.481
Atomic orbital electron populations
1.69675 1.06951 1.29983 1.48013 1.25181 0.95690 1.01881 0.95062
0.85441 0.79322 0.77966 0.79609 1.18856 1.19702 1.17945 1.20755
0.77450 0.96462 1.52836 0.88928 1.83415 1.21813 1.27323 1.79851
1.19674 0.91667 0.85510 0.92176 1.21402 1.01009 0.92843 1.10346
1.21493 0.95477 0.96751 0.92086 1.21233 0.93283 0.99291 1.05767
1.21380 0.99875 0.90337 0.96049 1.18075 0.89262 0.93725 1.17052
1.21947 0.87181 0.97392 0.87423 1.19978 0.98361 0.91343 1.07807
1.43606 1.14165 1.19263 1.42758 1.22314 0.87009 0.85184 0.85656
1.93781 1.49802 1.61336 1.43873 1.43940 1.21970 1.15434 1.44976
1.18423 0.82481 0.86140 0.78257 1.90979 1.78633 1.22936 1.43329
0.90235 0.86143 0.83131 0.82042 0.83512 0.82802 0.69097 0.69479
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -49.35 13.96 21.62 0.30 -49.05 16
2 C 0.02 1.20 5.49 84.85 0.47 1.66 16
3 Si 0.95 40.73 28.62 68.60 1.96 42.69 16
4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16
5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16
6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16
7 C -0.40 -20.32 9.95 67.93 0.68 -19.65 16
8 H 0.09 4.90 5.44 -2.91 -0.02 4.88 16
9 O -0.22 -9.85 7.94 -19.73 -0.16 -10.00 16
10 C 0.16 6.02 6.67 22.97 0.15 6.17 16
11 C -0.24 -8.10 9.16 22.35 0.20 -7.89 16
12 C -0.04 -0.98 10.03 22.32 0.22 -0.76 16
13 C -0.18 -3.56 10.02 22.25 0.22 -3.34 16
14 C -0.06 -1.26 8.28 22.58 0.19 -1.07 16
15 C -0.18 -5.19 5.80 -20.06 -0.12 -5.31 16
16 C 0.09 2.33 9.51 23.92 0.23 2.56 16
17 C -0.07 -1.76 6.67 39.60 0.26 -1.49 16
18 N -0.57 -11.59 5.19 -186.03 -0.97 -12.55 16
19 C 0.56 12.35 8.09 179.34 1.45 13.80 16
20 S -0.62 -17.73 31.19 -56.49 -1.76 -19.49 16
21 N -0.61 -12.04 5.85 -316.88 -1.85 -13.89 16
22 C 0.56 13.49 8.55 86.56 0.74 14.23 16
23 O -0.49 -14.42 18.05 -4.42 -0.08 -14.50 16
24 H 0.29 14.45 8.31 -92.71 -0.77 13.68 16
25 H 0.12 4.63 5.64 -2.91 -0.02 4.61 16
26 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16
27 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16
28 H 0.15 2.39 5.54 -2.91 -0.02 2.37 16
29 H 0.15 4.50 7.90 -2.91 -0.02 4.48 16
30 H 0.46 8.07 6.17 -92.71 -0.57 7.50 16
31 H 0.46 6.82 8.96 -92.71 -0.83 5.99 16
Total: -1.00 -62.23 294.41 1.98 -60.25
By element:
Atomic # 1 Polarization: 17.80 SS G_CDS: -0.17 Total: 17.63 kcal
Atomic # 6 Polarization: -5.78 SS G_CDS: 4.70 Total: -1.08 kcal
Atomic # 7 Polarization: -72.98 SS G_CDS: -2.52 Total: -75.50 kcal
Atomic # 8 Polarization: -24.26 SS G_CDS: -0.24 Total: -24.50 kcal
Atomic # 14 Polarization: 40.73 SS G_CDS: 1.96 Total: 42.69 kcal
Atomic # 16 Polarization: -17.73 SS G_CDS: -1.76 Total: -19.49 kcal
Total: -62.23 1.98 -60.25 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000008306353.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.105 kcal
(2) G-P(sol) polarization free energy of solvation -62.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.873 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds