Wall clock time and date at job start Tue Mar 31 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39923 * 125.81789 * 2 1 4 4 C 1.35316 * 107.97004 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.18985 * 179.97438 * 4 3 2 6 6 N 1.35799 * 107.61778 * 359.97438 * 4 3 2 7 7 C 1.39983 * 126.10090 * 179.97438 * 6 4 3 8 8 C 1.39489 * 120.05243 * 155.00159 * 7 6 4 9 9 C 1.38368 * 117.98872 * 180.30146 * 8 7 6 10 10 C 1.39616 * 117.96065 * 359.46549 * 9 8 7 11 11 S 1.76194 * 120.10078 * 180.24104 * 10 9 8 12 12 C 1.81403 * 103.00308 * 180.30259 * 11 10 9 13 13 C 1.50701 * 109.47180 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99653 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99580 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00263 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47174 * 90.00515 * 17 15 13 19 19 H 1.48503 * 109.47270 * 210.00505 * 17 15 13 20 20 H 1.48504 * 109.47311 * 330.00361 * 17 15 13 21 21 N 1.32459 * 119.80256 * 0.54707 * 10 9 8 22 22 N 1.28347 * 122.14828 * 359.71765 * 21 10 9 23 23 N 1.30849 * 125.82195 * 180.36313 * 2 1 3 24 24 H 1.09004 * 109.47096 * 90.00697 * 1 2 3 25 25 H 1.09000 * 109.47462 * 210.00103 * 1 2 3 26 26 H 1.08992 * 109.47691 * 330.00606 * 1 2 3 27 27 H 1.07997 * 126.01165 * 0.05008 * 3 2 1 28 28 H 1.09004 * 109.46968 * 270.04575 * 5 4 3 29 29 H 1.09002 * 109.47170 * 30.04077 * 5 4 3 30 30 H 1.08996 * 109.47335 * 150.04717 * 5 4 3 31 31 H 1.08002 * 121.00089 * 0.02562 * 8 7 6 32 32 H 1.08005 * 121.02038 * 179.70314 * 9 8 7 33 33 H 1.09000 * 109.47071 * 300.00360 * 12 11 10 34 34 H 1.09007 * 109.46995 * 60.00064 * 12 11 10 35 35 H 0.97003 * 119.99469 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3258 1.1346 0.0000 4 6 3.6138 0.7199 -0.0006 5 6 4.8335 1.6049 -0.0013 6 7 3.6084 -0.6381 -0.0004 7 6 4.7361 -1.4674 -0.0013 8 6 4.6510 -2.7628 0.5092 9 6 5.7933 -3.5434 0.4931 10 6 6.9571 -2.9896 -0.0438 11 16 8.4423 -3.9360 -0.0984 12 6 9.6280 -2.7913 -0.8564 13 6 10.9709 -3.4648 -0.9750 14 1 11.0985 -4.4797 -0.6286 15 6 12.0369 -2.7848 -1.5248 16 7 13.2088 -3.3727 -1.6288 17 14 11.8165 -1.0291 -2.1233 18 1 12.1086 -0.0873 -1.0130 19 1 12.7479 -0.7696 -3.2504 20 1 10.4176 -0.8345 -2.5823 21 7 6.9429 -1.7485 -0.5064 22 7 5.8837 -1.0240 -0.4856 23 7 2.2727 -1.0610 -0.0067 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5137 27 1 1.9890 2.1607 0.0008 28 1 5.1266 1.8187 -1.0292 29 1 4.6055 2.5384 0.5131 30 1 5.6508 1.0977 0.5114 31 1 3.7227 -3.1432 0.9092 32 1 5.7840 -4.5516 0.8803 33 1 9.2756 -2.5071 -1.8480 34 1 9.7214 -1.9006 -0.2349 35 1 13.9587 -2.8944 -2.0159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011067747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:41 Heat of formation + Delta-G solvation = 131.676248 kcal Electronic energy + Delta-G solvation = -19460.517771 eV Core-core repulsion = 16394.169816 eV Total energy + Delta-G solvation = -3066.347955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.86478 -40.57449 -34.78522 -33.47727 -33.13239 -32.45072 -31.17693 -29.49841 -28.27500 -27.20699 -24.86935 -24.25066 -22.54711 -20.74660 -20.08626 -18.06054 -17.78190 -17.37584 -16.84094 -15.97001 -14.82969 -14.77754 -14.68427 -14.09091 -14.01504 -13.70189 -13.51907 -13.39117 -13.23097 -12.92815 -12.72348 -12.64275 -12.51979 -12.15366 -11.58845 -11.03580 -10.88550 -10.76121 -10.62676 -10.45989 -10.36009 -9.98339 -9.78579 -9.34750 -9.24161 -8.81942 -8.73735 -7.17043 -6.27724 -4.33111 0.44353 0.71438 1.67202 1.79668 2.04400 2.48531 3.06830 3.22712 3.31240 3.36192 3.40933 4.08574 4.23001 4.27149 4.46560 4.49256 4.67638 4.79413 4.89108 5.05081 5.17288 5.29724 5.32720 5.37119 5.46474 5.48690 5.59719 5.75752 5.77666 5.84892 6.05615 6.40442 6.57290 6.61329 6.85718 7.27882 7.40126 8.15005 8.55900 8.69198 9.27360 10.83354 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003612 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.927943 B = 7749.842901 C = 8648.956182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.088 3.912 3 C -0.271 4.271 4 C 0.115 3.885 5 C -0.091 4.091 6 N -0.316 5.316 7 C 0.281 3.719 8 C -0.094 4.094 9 C -0.086 4.086 10 C 0.051 3.949 11 S -0.030 6.030 12 C 0.030 3.970 13 C -0.528 4.528 14 H 0.085 0.915 15 C 0.087 3.913 16 N -0.887 5.887 17 Si 0.875 3.125 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.259 1.259 21 N -0.223 5.223 22 N -0.239 5.239 23 N -0.289 5.289 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.886 7.130 5.002 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 C -0.299 4.299 4 C -0.009 4.009 5 C -0.150 4.150 6 N -0.095 5.095 7 C 0.042 3.958 8 C -0.126 4.126 9 C -0.121 4.121 10 C -0.204 4.204 11 S 0.211 5.789 12 C -0.119 4.119 13 C -0.567 4.567 14 H 0.103 0.897 15 C -0.119 4.119 16 N -0.523 5.523 17 Si 0.700 3.300 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.183 1.183 21 N -0.071 5.071 22 N -0.085 5.085 23 N -0.110 5.110 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.172 0.828 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.381 5.919 4.573 22.651 hybrid contribution -0.980 1.841 -0.167 2.092 sum -22.361 7.760 4.406 24.076 Atomic orbital electron populations 1.20214 0.86044 1.03537 1.03246 1.22513 0.97135 0.90700 0.97687 1.21178 0.90640 0.99988 1.18119 1.21539 0.97808 0.83493 0.98019 1.20538 0.92968 0.97187 1.04266 1.45424 1.03308 1.03573 1.57237 1.19336 0.86964 0.89957 0.99564 1.21857 1.00390 0.92460 0.97870 1.21984 0.90333 1.01671 0.98071 1.25515 1.01419 0.96583 0.96899 1.85699 0.97222 1.21558 1.74388 1.21750 0.95585 0.95715 0.98801 1.20391 0.90461 1.02228 1.43611 0.89737 1.24787 0.94523 0.98216 0.94403 1.69856 1.01025 1.37721 1.43726 0.86833 0.79215 0.84652 0.79261 1.19662 1.20727 1.18293 1.73747 1.15658 1.03221 1.14499 1.72765 0.95199 1.29020 1.11541 1.77422 0.84489 1.22453 1.26644 0.90215 0.90701 0.90113 0.82801 0.89325 0.89941 0.90126 0.82364 0.82020 0.93000 0.93457 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.44 36.00 0.38 -0.12 16 2 C 0.09 0.99 7.21 -82.38 -0.59 0.39 16 3 C -0.27 -2.97 10.65 -39.99 -0.43 -3.39 16 4 C 0.12 1.50 6.89 -81.88 -0.56 0.93 16 5 C -0.09 -1.02 9.45 36.00 0.34 -0.68 16 6 N -0.32 -4.71 3.79 -8.23 -0.03 -4.74 16 7 C 0.28 4.46 7.40 -154.07 -1.14 3.32 16 8 C -0.09 -1.28 9.84 -39.07 -0.38 -1.66 16 9 C -0.09 -1.18 9.96 -39.02 -0.39 -1.57 16 10 C 0.05 0.90 7.08 -16.77 -0.12 0.78 16 11 S -0.03 -0.60 21.85 -107.50 -2.35 -2.94 16 12 C 0.03 0.70 4.05 36.01 0.15 0.85 16 13 C -0.53 -14.49 9.68 -34.44 -0.33 -14.82 16 14 H 0.08 2.48 7.96 -52.49 -0.42 2.07 16 15 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 16 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 17 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 21 N -0.22 -4.34 10.60 31.49 0.33 -4.00 16 22 N -0.24 -4.26 9.29 31.38 0.29 -3.97 16 23 N -0.29 -4.03 12.18 33.68 0.41 -3.62 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.05 6.91 -51.93 -0.36 0.69 16 31 H 0.16 1.77 7.98 -52.49 -0.42 1.35 16 32 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.05 1.26 7.20 -51.92 -0.37 0.88 16 34 H 0.05 1.12 7.57 -51.92 -0.39 0.73 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -31.70 320.75 -7.68 -39.38 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.09 Total: -2.21 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -3.18 Total: -13.65 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 1.78 Total: -41.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.35 Total: -2.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.70 -7.68 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011067747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.051 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds