Wall clock time and date at job start Tue Mar 31 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39923 * 125.81789 * 2 1 4 4 C 1.35316 * 107.97004 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.18985 * 179.97438 * 4 3 2 6 6 N 1.35799 * 107.61778 * 359.97438 * 4 3 2 7 7 C 1.39983 * 126.10090 * 179.97438 * 6 4 3 8 8 C 1.39489 * 120.05243 * 155.00159 * 7 6 4 9 9 C 1.38368 * 117.98872 * 180.30146 * 8 7 6 10 10 C 1.39616 * 117.96065 * 359.46549 * 9 8 7 11 11 S 1.76194 * 120.10078 * 180.24104 * 10 9 8 12 12 C 1.81403 * 103.00308 * 180.30259 * 11 10 9 13 13 C 1.50701 * 109.47180 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99653 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99580 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00263 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47174 * 90.00515 * 17 15 13 19 19 H 1.48503 * 109.47270 * 210.00505 * 17 15 13 20 20 H 1.48504 * 109.47311 * 330.00361 * 17 15 13 21 21 N 1.32459 * 119.80256 * 0.54707 * 10 9 8 22 22 N 1.28347 * 122.14828 * 359.71765 * 21 10 9 23 23 N 1.30849 * 125.82195 * 180.36313 * 2 1 3 24 24 H 1.09004 * 109.47096 * 90.00697 * 1 2 3 25 25 H 1.09000 * 109.47462 * 210.00103 * 1 2 3 26 26 H 1.08992 * 109.47691 * 330.00606 * 1 2 3 27 27 H 1.07997 * 126.01165 * 0.05008 * 3 2 1 28 28 H 1.09004 * 109.46968 * 270.04575 * 5 4 3 29 29 H 1.09002 * 109.47170 * 30.04077 * 5 4 3 30 30 H 1.08996 * 109.47335 * 150.04717 * 5 4 3 31 31 H 1.08002 * 121.00089 * 0.02562 * 8 7 6 32 32 H 1.08005 * 121.02038 * 179.70314 * 9 8 7 33 33 H 1.09000 * 109.47071 * 300.00360 * 12 11 10 34 34 H 1.09007 * 109.46995 * 60.00064 * 12 11 10 35 35 H 0.97003 * 119.99469 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3258 1.1346 0.0000 4 6 3.6138 0.7199 -0.0006 5 6 4.8335 1.6049 -0.0013 6 7 3.6084 -0.6381 -0.0004 7 6 4.7361 -1.4674 -0.0013 8 6 4.6510 -2.7628 0.5092 9 6 5.7933 -3.5434 0.4931 10 6 6.9571 -2.9896 -0.0438 11 16 8.4423 -3.9360 -0.0984 12 6 9.6280 -2.7913 -0.8564 13 6 10.9709 -3.4648 -0.9750 14 1 11.0985 -4.4797 -0.6286 15 6 12.0369 -2.7848 -1.5248 16 7 13.2088 -3.3727 -1.6288 17 14 11.8165 -1.0291 -2.1233 18 1 12.1086 -0.0873 -1.0130 19 1 12.7479 -0.7696 -3.2504 20 1 10.4176 -0.8345 -2.5823 21 7 6.9429 -1.7485 -0.5064 22 7 5.8837 -1.0240 -0.4856 23 7 2.2727 -1.0610 -0.0067 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5137 27 1 1.9890 2.1607 0.0008 28 1 5.1266 1.8187 -1.0292 29 1 4.6055 2.5384 0.5131 30 1 5.6508 1.0977 0.5114 31 1 3.7227 -3.1432 0.9092 32 1 5.7840 -4.5516 0.8803 33 1 9.2756 -2.5071 -1.8480 34 1 9.7214 -1.9006 -0.2349 35 1 13.9587 -2.8944 -2.0159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011067747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:41 Heat of formation + Delta-G solvation = 112.900748 kcal Electronic energy + Delta-G solvation = -19461.331938 eV Core-core repulsion = 16394.169816 eV Total energy + Delta-G solvation = -3067.162122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.88725 -41.73716 -35.82425 -35.28118 -34.60050 -33.44477 -32.17799 -31.48990 -29.12770 -28.10516 -26.09439 -25.48457 -24.47515 -21.74389 -20.99025 -19.54995 -18.96626 -18.71661 -18.52096 -17.06727 -16.57677 -15.94675 -15.84004 -15.65755 -14.93959 -14.84577 -14.77326 -14.52345 -14.35586 -14.19042 -14.13514 -13.53485 -13.49054 -13.13488 -12.88884 -12.75837 -12.29348 -12.22613 -12.03870 -11.82435 -11.78082 -11.62446 -11.41675 -10.93014 -10.90485 -10.25987 -9.73598 -8.66479 -8.43276 -6.53483 -0.72993 -0.45859 0.31465 0.74078 0.93716 1.30151 1.32196 1.42960 1.47735 1.65052 2.18628 2.25672 2.90634 3.01650 3.11637 3.36378 3.55792 3.65681 3.82005 3.99347 4.25566 4.41756 4.56165 4.60194 4.63966 4.66235 4.66875 4.73415 4.82003 4.85721 4.97003 5.09875 5.21689 5.23694 5.62109 5.84787 5.97958 6.47132 6.50002 7.10816 7.29396 8.71397 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003612 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.927943 B = 7749.842901 C = 8648.956182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.091 3.909 3 C -0.260 4.260 4 C 0.089 3.911 5 C -0.087 4.087 6 N -0.337 5.337 7 C 0.284 3.716 8 C -0.087 4.087 9 C -0.066 4.066 10 C 0.035 3.965 11 S -0.022 6.022 12 C 0.030 3.970 13 C -0.534 4.534 14 H 0.052 0.948 15 C 0.034 3.966 16 N -0.930 5.930 17 Si 0.939 3.061 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.255 1.255 21 N -0.257 5.257 22 N -0.263 5.263 23 N -0.318 5.318 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.187 0.813 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.187 0.813 32 H 0.200 0.800 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.376 8.676 5.539 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.288 4.288 4 C -0.033 4.033 5 C -0.145 4.145 6 N -0.117 5.117 7 C 0.045 3.955 8 C -0.118 4.118 9 C -0.100 4.100 10 C -0.221 4.221 11 S 0.218 5.782 12 C -0.119 4.119 13 C -0.573 4.573 14 H 0.071 0.929 15 C -0.168 4.168 16 N -0.568 5.568 17 Si 0.762 3.238 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.179 1.179 21 N -0.103 5.103 22 N -0.109 5.109 23 N -0.138 5.138 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.205 0.795 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.204 0.796 32 H 0.217 0.783 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.905 7.501 5.111 26.507 hybrid contribution -0.187 1.392 -0.271 1.431 sum -25.092 8.893 4.840 27.057 Atomic orbital electron populations 1.20421 0.82890 1.05080 1.04490 1.23325 0.98970 0.90122 0.95351 1.21645 0.89648 1.01489 1.15991 1.22029 0.99234 0.83195 0.98813 1.20544 0.91822 0.98000 1.04129 1.45596 1.03320 1.04113 1.58646 1.19666 0.86913 0.90927 0.98043 1.22173 1.01245 0.91474 0.96955 1.22337 0.88657 1.02961 0.96044 1.25420 1.01471 0.96532 0.98700 1.85384 0.97408 1.20434 1.75010 1.21410 0.95245 0.96391 0.98826 1.20587 0.92579 1.01148 1.43010 0.92943 1.25657 0.94162 1.02469 0.94542 1.69974 1.02035 1.39684 1.45110 0.85820 0.79332 0.79556 0.79136 1.18641 1.19807 1.17895 1.73626 1.17035 1.04163 1.15510 1.72703 0.95732 1.29207 1.13256 1.77410 0.84248 1.23902 1.28279 0.88935 0.90271 0.87508 0.79549 0.89694 0.86886 0.92431 0.79556 0.78320 0.93823 0.93784 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.44 71.23 0.74 0.05 16 2 C 0.09 1.77 7.21 43.11 0.31 2.08 16 3 C -0.26 -4.87 10.65 22.00 0.23 -4.64 16 4 C 0.09 2.17 6.89 41.27 0.28 2.45 16 5 C -0.09 -1.85 9.45 71.23 0.67 -1.18 16 6 N -0.34 -9.56 3.79 -179.94 -0.68 -10.24 16 7 C 0.28 8.75 7.40 132.86 0.98 9.73 16 8 C -0.09 -2.17 9.84 22.60 0.22 -1.95 16 9 C -0.07 -1.69 9.96 22.63 0.23 -1.47 16 10 C 0.04 1.23 7.08 84.93 0.60 1.83 16 11 S -0.02 -0.88 21.85 -56.49 -1.23 -2.11 16 12 C 0.03 1.45 4.05 71.24 0.29 1.74 16 13 C -0.53 -30.36 9.68 25.60 0.25 -30.11 16 14 H 0.05 3.24 7.96 -2.91 -0.02 3.21 16 15 C 0.03 1.92 5.47 84.65 0.46 2.38 16 16 N -0.93 -56.35 13.96 21.45 0.30 -56.05 16 17 Si 0.94 43.97 27.47 68.60 1.88 45.85 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 21 N -0.26 -10.04 10.60 -54.29 -0.58 -10.61 16 22 N -0.26 -9.40 9.29 -54.63 -0.51 -9.90 16 23 N -0.32 -8.18 12.18 -47.35 -0.58 -8.75 16 24 H 0.09 0.73 8.14 -2.38 -0.02 0.72 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.82 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.50 6.91 -2.39 -0.02 1.48 16 31 H 0.19 3.59 7.98 -2.91 -0.02 3.57 16 32 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 33 H 0.04 2.16 7.20 -2.39 -0.02 2.14 16 34 H 0.04 2.13 7.57 -2.39 -0.02 2.12 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -71.47 320.75 4.94 -66.54 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.05 Total: 4.37 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 5.28 Total: -19.09 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -2.04 Total: -95.55 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.23 Total: -2.11 kcal Total: -71.47 4.94 -66.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011067747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.436 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds