Wall clock time and date at job start Tue Mar 31 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00186 * 2 1 4 4 H 1.48495 * 109.47043 * 269.99662 * 3 2 1 5 5 H 1.48494 * 109.46952 * 29.99946 * 3 2 1 6 6 H 1.48505 * 109.47070 * 149.99602 * 3 2 1 7 7 C 1.37884 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99770 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.35438 * 119.47109 * 90.00246 * 10 9 7 12 12 C 1.50695 * 119.38532 * 0.02562 * 11 10 9 13 13 F 1.39896 * 109.47188 * 179.72922 * 12 11 10 14 14 F 1.39908 * 109.46755 * 59.73305 * 12 11 10 15 15 F 1.39894 * 109.47297 * 299.73304 * 12 11 10 16 16 C 1.35756 * 121.22536 * 179.74473 * 11 10 9 17 17 C 1.39471 * 120.13401 * 0.25279 * 16 11 10 18 18 C 1.39331 * 118.96034 * 359.97438 * 17 16 11 19 19 C 1.47086 * 120.58576 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99979 * 174.14271 * 19 18 17 21 21 O 1.21647 * 119.99973 * 354.14363 * 19 18 17 22 22 C 1.34659 * 119.47004 * 270.26298 * 10 9 7 23 23 O 1.21890 * 120.10391 * 359.97438 * 22 10 9 24 24 H 0.97006 * 119.99562 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47393 * 59.99803 * 9 7 2 26 26 H 1.08996 * 109.47478 * 299.99824 * 9 7 2 27 27 H 1.08003 * 119.92917 * 180.27536 * 16 11 10 28 28 H 1.08007 * 120.51916 * 180.02562 * 17 16 11 29 29 H 0.97008 * 119.99898 * 5.07702 * 20 19 18 30 30 H 0.97001 * 119.99950 * 185.07209 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6360 -4.1192 1.1797 12 6 2.1290 -3.5272 2.4694 13 9 2.7011 -4.2059 3.5507 14 9 0.7366 -3.6523 2.5243 15 9 2.4785 -2.1740 2.5306 16 6 3.5138 -5.1539 1.2212 17 6 3.9925 -5.7140 0.0370 18 6 3.5551 -5.1950 -1.1798 19 6 4.0364 -5.7588 -2.4502 20 7 3.5181 -5.3287 -3.6176 21 8 4.9023 -6.6132 -2.4472 22 6 2.6376 -4.1127 -1.1718 23 8 2.2398 -3.6407 -2.2228 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 3.8418 -5.5444 2.1733 28 1 4.6907 -6.5376 0.0628 29 1 2.8817 -4.5966 -3.6254 30 1 3.7814 -5.7513 -4.4501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014152443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:37 Heat of formation + Delta-G solvation = -202.560242 kcal Electronic energy + Delta-G solvation = -23986.475552 eV Core-core repulsion = 19752.898558 eV Total energy + Delta-G solvation = -4233.576994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.36125 -48.89181 -48.68954 -42.70355 -40.18148 -38.49628 -36.18586 -34.58275 -34.30650 -32.19764 -29.81848 -28.21340 -25.91867 -24.58302 -23.68210 -22.16286 -20.04413 -19.66804 -19.62258 -19.09360 -18.87343 -18.53079 -17.51530 -16.94927 -16.86073 -16.58604 -16.09801 -15.70635 -15.59105 -15.46056 -15.26271 -15.21029 -14.93122 -14.85813 -14.53940 -14.41041 -13.77321 -13.53372 -13.37476 -13.21003 -12.95986 -12.68946 -12.34554 -11.98850 -11.40437 -11.11216 -11.05696 -10.72696 -10.61374 -9.36886 -8.35095 -6.48382 -1.00630 0.52231 1.04077 1.36938 1.37987 1.46642 1.54555 1.58744 2.31148 2.35954 2.53273 2.68576 2.92086 2.98534 3.18508 3.34598 3.78389 3.90642 3.99998 4.45282 4.57080 4.77496 4.84166 4.92116 5.16053 5.53122 5.73725 5.81311 5.88689 6.36329 6.54158 6.80762 7.20596 7.32926 8.73962 Molecular weight = 290.07amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.007692 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.903731 B = 3639.088766 C = 4950.046153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.211 3.789 10 N -0.456 5.456 11 C 0.095 3.905 12 C 0.512 3.488 13 F -0.146 7.146 14 F -0.172 7.172 15 F -0.158 7.158 16 C -0.171 4.171 17 C 0.081 3.919 18 C -0.285 4.285 19 C 0.585 3.415 20 N -0.835 5.835 21 O -0.581 6.581 22 C 0.520 3.480 23 O -0.565 6.565 24 H 0.272 0.728 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.211 0.789 28 H 0.193 0.807 29 H 0.415 0.585 30 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 -10.075 5.362 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.093 3.907 10 N -0.160 5.160 11 C -0.020 4.020 12 C 0.457 3.543 13 F -0.127 7.127 14 F -0.153 7.153 15 F -0.139 7.139 16 C -0.194 4.194 17 C 0.057 3.943 18 C -0.293 4.293 19 C 0.371 3.629 20 N -0.407 5.407 21 O -0.464 6.464 22 C 0.323 3.677 23 O -0.450 6.450 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.228 0.772 28 H 0.210 0.790 29 H 0.255 0.745 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.748 -10.022 4.875 12.540 hybrid contribution -0.413 1.485 -0.453 1.607 sum 5.335 -8.537 4.423 10.996 Atomic orbital electron populations 1.70000 1.07300 1.28669 1.49491 1.25643 0.95709 1.02551 0.93802 0.85484 0.78901 0.78591 0.78403 1.20283 1.19861 1.18819 1.21221 0.93038 0.90279 1.53218 0.92500 1.20015 0.88003 0.82547 1.00180 1.45654 1.36189 1.28948 1.05224 1.21064 0.98360 0.96639 0.85946 1.17905 0.75703 0.77010 0.83669 1.93219 1.84149 1.79417 1.55944 1.93207 1.30104 1.95588 1.96440 1.93387 1.91510 1.32607 1.96423 1.21102 0.99237 0.96402 1.02691 1.22286 0.89832 0.93831 0.88327 1.21169 1.07957 1.03244 0.96942 1.17446 0.80537 0.80704 0.84185 1.44364 1.48292 1.39926 1.08095 1.90766 1.32736 1.34738 1.88170 1.17250 0.83188 0.84501 0.82764 1.90556 1.61128 1.63665 1.29609 0.91926 0.94534 0.92199 0.77204 0.79015 0.74514 0.76148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.40 13.29 21.45 0.28 -51.12 16 2 C 0.02 1.30 5.46 84.66 0.46 1.76 16 3 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -28.53 7.73 25.60 0.20 -28.33 16 8 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.21 10.33 4.41 85.63 0.38 10.70 16 10 N -0.46 -18.31 2.56 -639.17 -1.64 -19.95 16 11 C 0.10 2.97 6.14 41.43 0.25 3.23 16 12 C 0.51 15.92 2.79 71.23 0.20 16.12 16 13 F -0.15 -3.38 15.88 44.97 0.71 -2.66 16 14 F -0.17 -5.84 15.16 44.97 0.68 -5.16 16 15 F -0.16 -5.99 14.95 44.97 0.67 -5.31 16 16 C -0.17 -3.72 9.36 21.99 0.21 -3.51 16 17 C 0.08 1.88 9.69 22.83 0.22 2.11 16 18 C -0.29 -9.29 5.92 -19.79 -0.12 -9.40 16 19 C 0.58 19.45 8.01 86.56 0.69 20.14 16 20 N -0.84 -25.17 8.79 -176.11 -1.55 -26.72 16 21 O -0.58 -20.57 17.24 -4.18 -0.07 -20.65 16 22 C 0.52 20.87 7.43 85.16 0.63 21.50 16 23 O -0.57 -25.75 13.27 -4.96 -0.07 -25.82 16 24 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 25 H 0.04 2.02 7.39 -2.39 -0.02 2.00 16 26 H 0.06 2.94 5.14 -2.39 -0.01 2.93 16 27 H 0.21 2.61 7.04 -2.91 -0.02 2.59 16 28 H 0.19 3.23 7.71 -2.91 -0.02 3.20 16 29 H 0.41 13.84 5.44 -92.75 -0.50 13.34 16 30 H 0.41 9.84 8.93 -92.71 -0.83 9.01 16 Total: -1.00 -65.96 276.70 4.11 -61.85 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.08 Total: 16.66 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 3.13 Total: 34.31 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -2.90 Total: -97.79 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.14 Total: -46.46 kcal Atomic # 9 Polarization: -15.20 SS G_CDS: 2.07 Total: -13.14 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -65.96 4.11 -61.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014152443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.711 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds