Wall clock time and date at job start Tue Mar 31 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00070 * 2 1 4 4 C 1.50704 * 109.47456 * 269.99949 * 3 2 1 5 5 H 1.07998 * 119.99571 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00028 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99585 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00092 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47008 * 89.99904 * 8 6 4 10 10 H 1.48493 * 109.47134 * 209.99816 * 8 6 4 11 11 H 1.48504 * 109.47164 * 330.00194 * 8 6 4 12 12 C 1.34773 * 119.99607 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99988 * 179.97438 * 12 2 1 14 14 C 1.50704 * 120.00120 * 0.02562 * 12 2 1 15 15 O 1.42902 * 109.47038 * 179.97438 * 14 12 2 16 16 C 1.35895 * 116.99970 * 179.97438 * 15 14 12 17 17 C 1.38748 * 120.09186 * 0.02562 * 16 15 14 18 18 C 1.38006 * 119.87745 * 180.02562 * 17 16 15 19 19 C 1.38542 * 120.29202 * 359.97438 * 18 17 16 20 20 C 1.38266 * 119.93797 * 0.02562 * 19 18 17 21 21 C 1.38416 * 119.90274 * 0.02562 * 20 19 18 22 22 C 1.51383 * 109.75351 * 180.02562 * 20 19 18 23 23 C 1.54339 * 105.17324 * 342.80716 * 22 20 19 24 24 C 1.51698 * 130.24225 * 179.84274 * 19 18 17 25 25 H 1.08999 * 109.47033 * 270.00005 * 1 2 3 26 26 H 1.09003 * 109.46736 * 29.99716 * 1 2 3 27 27 H 1.09000 * 109.47133 * 149.99465 * 1 2 3 28 28 H 1.09003 * 109.47652 * 30.00253 * 3 2 1 29 29 H 1.08999 * 109.47001 * 149.99958 * 3 2 1 30 30 H 0.96999 * 119.99495 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47032 * 60.00060 * 14 12 2 32 32 H 1.08997 * 109.46963 * 300.00031 * 14 12 2 33 33 H 1.08007 * 120.06382 * 0.02562 * 17 16 15 34 34 H 1.08006 * 119.85283 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.91041 * 180.02562 * 21 20 19 36 36 H 1.09000 * 110.30267 * 223.87989 * 22 20 19 37 37 H 1.08997 * 110.38024 * 101.77648 * 22 20 19 38 38 H 1.09002 * 110.82153 * 144.59302 * 23 22 20 39 39 H 1.09002 * 110.82354 * 267.94058 * 23 22 20 40 40 H 1.09003 * 110.25235 * 78.27189 * 24 19 18 41 41 H 1.08997 * 110.49495 * 316.02724 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8775 -1.6727 7 7 3.3467 3.2569 -2.9127 8 14 3.7352 3.9280 -0.2528 9 1 5.1085 3.5056 0.1226 10 1 3.7512 5.3547 -0.6640 11 1 2.8295 3.7585 0.9118 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3852 -2.4723 -0.0017 15 8 2.3138 -3.5585 -0.0027 16 6 1.7944 -4.8143 -0.0032 17 6 0.4191 -4.9982 -0.0034 18 6 -0.1036 -6.2754 -0.0035 19 6 0.7388 -7.3753 -0.0039 20 6 2.1096 -7.1946 -0.0037 21 6 2.6369 -5.9148 -0.0026 22 6 2.8031 -8.5402 -0.0049 23 6 1.7232 -9.5516 0.4345 24 6 0.4154 -8.8574 -0.0009 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1383 0.5138 30 1 3.8235 4.0827 -3.0898 31 1 0.7589 -2.5294 -0.8920 32 1 0.7583 -2.5306 0.8880 33 1 -0.2411 -4.1434 -0.0035 34 1 -1.1742 -6.4182 -0.0040 35 1 3.7075 -5.7735 -0.0029 36 1 3.6313 -8.5395 0.7037 37 1 3.1623 -8.7812 -1.0053 38 1 1.8487 -10.5021 -0.0839 39 1 1.7439 -9.6957 1.5148 40 1 0.1294 -9.1833 -1.0010 41 1 -0.3821 -9.0726 0.7103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:24 Heat of formation + Delta-G solvation = -44.095461 kcal Electronic energy + Delta-G solvation = -22051.947486 eV Core-core repulsion = 18704.190881 eV Total energy + Delta-G solvation = -3347.756605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60209 -39.37391 -38.13195 -35.10528 -34.78441 -32.60565 -31.61397 -29.65363 -28.61156 -27.92220 -26.74693 -25.79494 -23.01320 -22.43282 -21.01628 -20.79356 -18.71057 -17.90951 -17.03143 -16.62919 -16.18904 -15.89681 -15.67358 -15.51164 -14.95833 -14.53590 -14.44240 -13.77604 -13.52735 -13.14289 -13.09340 -12.82055 -12.44303 -12.39153 -12.29582 -12.14268 -12.03459 -11.69861 -11.53596 -11.44717 -11.41273 -10.96707 -10.77309 -10.61586 -10.55205 -10.17666 -9.57745 -9.10397 -8.90814 -8.61173 -8.08010 -7.81691 -6.10917 -4.10431 1.20425 1.33469 2.83592 3.17081 3.28290 3.34114 3.36311 3.60845 3.93191 4.29729 4.35615 4.37726 4.70426 4.72502 4.81685 4.91759 5.03253 5.09873 5.14894 5.17378 5.22668 5.32263 5.44399 5.46961 5.48828 5.54443 5.66068 5.70963 5.74112 5.88015 6.02517 6.06127 6.17249 6.28542 6.51900 6.57747 6.66534 6.87844 7.20220 7.40406 7.56780 8.08909 8.42926 8.81937 8.92463 9.48500 11.02412 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038180 B = 0.002829 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.187749 B = 9895.350459 C =10201.247786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.594 5.594 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.509 3.491 13 O -0.516 6.516 14 C 0.044 3.956 15 O -0.286 6.286 16 C 0.138 3.862 17 C -0.211 4.211 18 C -0.066 4.066 19 C -0.144 4.144 20 C -0.059 4.059 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.075 4.075 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 -22.543 8.027 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.328 5.328 3 C 0.097 3.903 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.293 3.707 13 O -0.391 6.391 14 C -0.034 4.034 15 O -0.198 6.198 16 C 0.092 3.908 17 C -0.230 4.230 18 C -0.085 4.085 19 C -0.144 4.144 20 C -0.059 4.059 21 C -0.158 4.158 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.112 4.112 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.788 -22.305 7.917 25.247 hybrid contribution -0.063 0.884 0.456 0.997 sum -8.851 -21.420 8.374 24.643 Atomic orbital electron populations 1.21741 0.80724 1.03272 1.00740 1.47752 1.06373 1.06596 1.72121 1.19718 0.92543 0.79476 0.98578 1.21314 1.37269 1.07283 0.91169 0.90719 1.24863 0.95149 0.97347 0.95646 1.69898 1.41299 1.23560 1.18678 0.86835 0.80212 0.79733 0.82826 1.19822 1.21009 1.19039 1.19731 0.88144 0.84277 0.78516 1.90722 1.13476 1.86689 1.48231 1.22635 0.92067 0.85716 1.03030 1.86187 1.34384 1.11270 1.88000 1.18897 0.91789 0.84655 0.95503 1.21166 0.93888 0.98333 1.09603 1.20352 0.99267 0.90817 0.98018 1.20521 0.93836 0.95145 1.04895 1.20289 0.94558 0.93573 0.97515 1.19805 1.00055 0.89078 1.06874 1.21061 0.98120 0.90421 1.02320 1.22286 0.94112 0.97944 1.01462 1.21003 0.98068 0.90454 1.01704 0.93260 0.90039 0.92313 0.94841 0.94374 0.92490 0.89305 0.89574 0.85189 0.86045 0.85161 0.90490 0.89945 0.90619 0.90992 0.90592 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.24 59.85 0.61 1.75 16 2 N -0.59 -12.13 2.86 -182.95 -0.52 -12.65 16 3 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 4 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 8 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 12 C 0.51 10.66 7.75 -10.98 -0.09 10.57 16 13 O -0.52 -13.42 16.08 -14.36 -0.23 -13.65 16 14 C 0.04 0.68 3.77 36.01 0.14 0.82 16 15 O -0.29 -4.98 9.67 -39.32 -0.38 -5.36 16 16 C 0.14 2.00 6.68 -39.26 -0.26 1.73 16 17 C -0.21 -2.52 9.04 -39.48 -0.36 -2.87 16 18 C -0.07 -0.70 10.03 -39.55 -0.40 -1.10 16 19 C -0.14 -1.51 6.15 -104.01 -0.64 -2.15 16 20 C -0.06 -0.67 6.13 -104.21 -0.64 -1.31 16 21 C -0.14 -1.88 9.98 -39.38 -0.39 -2.27 16 22 C -0.08 -0.68 6.77 -26.85 -0.18 -0.86 16 23 C -0.12 -0.80 7.07 -25.33 -0.18 -0.98 16 24 C -0.08 -0.57 6.79 -26.70 -0.18 -0.75 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 28 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 29 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 30 H 0.27 7.64 8.31 -40.82 -0.34 7.31 16 31 H 0.09 1.17 6.93 -51.93 -0.36 0.81 16 32 H 0.09 1.04 7.63 -51.93 -0.40 0.64 16 33 H 0.13 1.29 6.31 -52.48 -0.33 0.95 16 34 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -35.73 339.67 -8.90 -44.63 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.96 Total: -2.23 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.03 Total: -5.79 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.25 Total: -39.60 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.61 Total: -19.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.73 -8.90 -44.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.538 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds