Wall clock time and date at job start Tue Mar 31 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47079 * 269.99680 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99145 * 3 2 1 6 6 H 1.48501 * 109.47469 * 149.99738 * 3 2 1 7 7 C 1.38817 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99621 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00285 * 180.02562 * 7 2 1 10 10 S 1.65599 * 120.00257 * 184.90030 * 9 7 2 11 11 O 1.42092 * 106.40356 * 177.35749 * 10 9 7 12 12 O 1.42101 * 106.40081 * 310.28000 * 10 9 7 13 13 C 1.76211 * 107.21598 * 63.81798 * 10 9 7 14 14 C 1.38219 * 120.01288 * 244.81862 * 13 10 9 15 15 C 1.38221 * 120.02339 * 179.72240 * 14 13 10 16 16 C 1.38264 * 120.05113 * 0.55214 * 15 14 13 17 17 N 1.47998 * 119.98900 * 179.70073 * 16 15 14 18 18 O 1.21807 * 120.00308 * 180.02562 * 17 16 15 19 19 O 1.21802 * 119.99825 * 0.02700 * 17 16 15 20 20 C 1.38179 * 120.02546 * 359.72382 * 16 15 14 21 21 C 1.38438 * 120.00719 * 65.09176 * 13 10 9 22 22 F 1.35095 * 120.03280 * 0.02562 * 21 13 10 23 23 H 0.97007 * 120.00005 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99634 * 5.18020 * 9 7 2 25 25 H 1.08002 * 119.98067 * 359.97438 * 14 13 10 26 26 H 1.07998 * 119.97270 * 180.27752 * 15 14 13 27 27 H 1.08005 * 120.01262 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 16 4.2077 -2.6311 -0.1208 11 8 5.5875 -2.2936 -0.1545 12 8 3.6446 -3.5050 0.8480 13 6 3.8259 -3.3224 -1.6960 14 6 3.1350 -4.5167 -1.7778 15 6 2.8304 -5.0563 -3.0134 16 6 3.2263 -4.4080 -4.1687 17 7 2.9052 -4.9904 -5.4908 18 8 3.2543 -4.4197 -6.5087 19 8 2.2918 -6.0403 -5.5611 20 6 3.9221 -3.2168 -4.0893 21 6 4.2229 -2.6723 -2.8520 22 9 4.9035 -1.5080 -2.7732 23 1 -0.4850 0.8401 -0.0004 24 1 3.8645 -0.3656 0.0769 25 1 2.8295 -5.0264 -0.8759 26 1 2.2866 -5.9872 -3.0764 27 1 4.2309 -2.7104 -4.9918 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043592132.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:55 Heat of formation + Delta-G solvation = -84.526276 kcal Electronic energy + Delta-G solvation = -20964.687654 eV Core-core repulsion = 17154.236289 eV Total energy + Delta-G solvation = -3810.451365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.025 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.17818 -42.26743 -39.07415 -36.66417 -36.28194 -35.16510 -34.95996 -32.16478 -32.02621 -31.00472 -26.86703 -24.65529 -23.30638 -22.79838 -19.62419 -19.32198 -18.83398 -18.67769 -17.65708 -17.59477 -16.83642 -16.47906 -16.30132 -15.74150 -15.20530 -14.54929 -14.35377 -13.91490 -13.49809 -13.25171 -13.07347 -12.83227 -12.12989 -11.79000 -11.65324 -11.38314 -11.34620 -11.24702 -11.22447 -11.14894 -10.76286 -10.62664 -10.50146 -10.38087 -9.90195 -9.21094 -8.89376 -6.95444 -4.29207 -0.44493 0.75149 0.98054 1.16616 1.26324 2.87713 2.90659 2.93665 2.96095 3.71686 3.81123 3.82615 4.20551 4.36848 4.43392 4.66234 4.77601 4.98685 5.12836 5.39867 5.51757 5.64113 5.81401 6.11297 6.38240 6.48183 7.08272 7.54764 7.83714 8.44478 8.50543 10.10977 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.006167 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.448865 B = 4539.432229 C = 4945.425327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.048 3.952 3 Si 0.889 3.111 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.239 4.239 8 H 0.130 0.870 9 N -0.946 5.946 10 S 2.540 3.460 11 O -0.991 6.991 12 O -0.957 6.957 13 C -0.641 4.641 14 C -0.002 4.002 15 C -0.087 4.087 16 C 0.007 3.993 17 N 0.028 4.972 18 O -0.158 6.158 19 O -0.152 6.152 20 C -0.117 4.117 21 C 0.194 3.806 22 F -0.109 7.109 23 H 0.287 0.713 24 H 0.395 0.605 25 H 0.171 0.829 26 H 0.161 0.839 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -3.316 -4.720 6.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.166 4.166 3 Si 0.713 3.287 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.388 4.388 8 H 0.147 0.853 9 N -0.694 5.694 10 S 2.632 3.368 11 O -0.980 6.980 12 O -0.947 6.947 13 C -0.715 4.715 14 C -0.021 4.021 15 C -0.107 4.107 16 C -0.076 4.076 17 N 0.548 4.452 18 O -0.374 6.374 19 O -0.369 6.369 20 C -0.138 4.138 21 C 0.173 3.827 22 F -0.087 7.087 23 H 0.098 0.902 24 H 0.230 0.770 25 H 0.188 0.812 26 H 0.179 0.821 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.496 -3.635 -3.598 6.810 hybrid contribution 0.129 1.235 -1.237 1.753 sum 4.625 -2.401 -4.835 7.109 Atomic orbital electron populations 1.69724 1.06172 1.29576 1.41003 1.25453 0.95632 0.99557 0.95988 0.86416 0.80378 0.81971 0.79904 1.18752 1.19322 1.18308 1.19488 0.78890 0.97345 1.43109 0.85271 1.52999 1.15463 1.24729 1.76234 1.11454 0.74253 0.74215 0.76834 1.93425 1.34209 1.82953 1.87376 1.93456 1.78878 1.65437 1.56882 1.33029 1.07282 1.05051 1.26183 1.20948 0.91260 0.91972 0.97965 1.21248 0.98286 1.01077 0.90123 1.20845 1.06427 0.97243 0.83062 1.43572 0.98508 1.00224 1.02851 1.94543 1.55716 1.62491 1.24612 1.94535 1.38412 1.10272 1.93710 1.20851 0.98917 0.94834 0.99179 1.16567 0.91677 0.82559 0.91945 1.91630 1.76182 1.44078 1.96838 0.90247 0.76984 0.81184 0.82098 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.83 13.97 55.49 0.78 -19.05 15 2 C 0.05 1.10 5.50 -17.43 -0.10 1.00 15 3 Si 0.89 17.12 27.79 -169.99 -4.72 12.39 15 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.71 6.45 56.52 0.36 -4.35 15 7 C -0.24 -5.40 10.11 -15.06 -0.15 -5.55 15 8 H 0.13 3.03 8.05 -52.49 -0.42 2.60 15 9 N -0.95 -19.57 5.54 31.50 0.17 -19.39 15 10 S 2.54 50.95 5.35 -107.50 -0.57 50.37 15 11 O -0.99 -21.60 17.42 -57.17 -1.00 -22.60 15 12 O -0.96 -20.75 16.69 -57.17 -0.95 -21.71 15 13 C -0.64 -11.26 5.81 -39.51 -0.23 -11.49 15 14 C 0.00 -0.03 9.55 -39.59 -0.38 -0.41 15 15 C -0.09 -1.20 9.55 -39.58 -0.38 -1.58 15 16 C 0.01 0.11 6.85 -79.97 -0.55 -0.44 15 17 N 0.03 0.43 4.45 33.95 0.15 0.58 15 18 O -0.16 -2.47 18.45 -29.46 -0.54 -3.01 15 19 O -0.15 -2.33 18.45 -29.46 -0.54 -2.87 15 20 C -0.12 -1.76 9.53 -39.51 -0.38 -2.14 15 21 C 0.19 3.29 7.21 -39.42 -0.28 3.00 15 22 F -0.11 -1.91 16.28 2.25 0.04 -1.87 15 23 H 0.29 6.33 8.31 -40.82 -0.34 5.99 15 24 H 0.39 7.67 5.87 -34.47 -0.20 7.47 15 25 H 0.17 2.28 7.33 -52.49 -0.38 1.90 15 26 H 0.16 1.75 7.61 -52.49 -0.40 1.36 15 27 H 0.17 2.11 7.61 -52.48 -0.40 1.71 15 LS Contribution 273.95 15.07 4.13 4.13 Total: -1.00 -26.77 273.95 -6.49 -33.26 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -0.98 Total: 7.37 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.44 Total: -17.60 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 1.10 Total: -37.87 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -3.04 Total: -50.19 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -4.72 Total: 12.39 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.57 Total: 50.37 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.77 -6.49 -33.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043592132.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.267 kcal (2) G-P(sol) polarization free energy of solvation -26.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds