Wall clock time and date at job start Tue Mar 31 2020 02:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46841 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47071 * 29.99501 * 3 2 1 6 6 H 1.48499 * 109.47488 * 150.00041 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46901 * 109.34060 * 306.17165 * 11 10 9 13 13 C 1.46895 * 111.00312 * 187.25724 * 12 11 10 14 14 C 1.50700 * 109.47395 * 169.99318 * 13 12 11 15 15 C 1.38354 * 119.85611 * 269.72969 * 14 13 12 16 16 C 1.37965 * 120.14081 * 179.72552 * 15 14 13 17 17 C 1.39572 * 119.85596 * 0.51845 * 16 15 14 18 18 C 1.47841 * 120.14824 * 179.77096 * 17 16 15 19 19 N 1.34778 * 119.99704 * 359.97438 * 18 17 16 20 20 O 1.21551 * 120.00703 * 179.97438 * 18 17 16 21 21 C 1.39578 * 119.71039 * 359.75664 * 17 16 15 22 22 C 1.37961 * 119.85175 * 359.97438 * 21 17 16 23 23 C 1.46896 * 111.27163 * 63.10432 * 12 11 10 24 24 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 25 25 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 27 27 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 28 28 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 29 29 H 1.08999 * 109.49733 * 66.12618 * 11 10 9 30 30 H 1.08997 * 109.47155 * 290.00028 * 13 12 11 31 31 H 1.09003 * 109.47600 * 49.99659 * 13 12 11 32 32 H 1.07994 * 119.93068 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.06857 * 180.27129 * 16 15 14 34 34 H 0.96998 * 120.00150 * 359.97438 * 19 18 17 35 35 H 0.97001 * 120.00338 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.07247 * 179.97438 * 21 17 16 37 37 H 1.08000 * 119.92372 * 179.97438 * 22 21 17 38 38 H 1.08993 * 109.49398 * 56.85765 * 23 12 11 39 39 H 1.09000 * 109.49317 * 176.94056 * 23 12 11 40 40 H 1.09010 * 109.62596 * 248.49763 * 24 9 7 41 41 H 1.09001 * 109.63431 * 9.07637 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7887 13 6 0.8202 -5.7005 -2.8292 14 6 -0.5462 -5.8879 -3.4364 15 6 -1.4179 -6.8173 -2.8974 16 6 -2.6724 -6.9897 -3.4451 17 6 -3.0574 -6.2317 -4.5519 18 6 -4.3983 -6.4147 -5.1471 19 7 -5.2517 -7.3156 -4.6212 20 8 -4.7311 -5.7529 -6.1108 21 6 -2.1711 -5.2998 -5.0943 22 6 -0.9216 -5.1333 -4.5337 23 6 0.4411 -3.3537 -2.3697 24 6 0.2050 -2.3428 -1.2424 25 1 -0.4850 0.8401 -0.0004 26 1 1.0922 -4.0631 0.8618 27 1 2.7857 -3.5345 0.6797 28 1 2.2375 -5.6174 -0.6423 29 1 2.8147 -4.2689 -1.6516 30 1 1.5231 -5.3938 -3.6037 31 1 1.1534 -6.6397 -2.3875 32 1 -1.1171 -7.4063 -2.0436 33 1 -3.3534 -7.7125 -3.0207 34 1 -4.9861 -7.8440 -3.8524 35 1 -6.1316 -7.4355 -5.0114 36 1 -2.4628 -4.7104 -5.9510 37 1 -0.2347 -4.4128 -4.9527 38 1 1.2742 -3.0204 -2.9884 39 1 -0.4577 -3.4331 -2.9813 40 1 -0.6904 -2.6184 -0.6851 41 1 0.0843 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051854789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:47 Heat of formation + Delta-G solvation = 20.117306 kcal Electronic energy + Delta-G solvation = -22666.709500 eV Core-core repulsion = 19354.030121 eV Total energy + Delta-G solvation = -3312.679379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.25426 -38.85498 -37.57136 -34.62133 -33.98236 -32.06125 -31.03878 -30.58170 -29.89912 -27.39977 -25.11619 -23.21833 -22.84873 -22.35815 -21.76339 -20.36657 -19.08901 -18.34023 -17.01076 -16.78139 -15.61953 -15.30160 -15.27790 -14.93098 -14.85038 -14.50120 -14.11289 -13.88877 -13.54976 -13.44726 -13.13827 -13.10891 -12.81701 -12.39891 -11.72274 -11.57439 -11.37853 -11.08562 -11.01698 -10.75251 -10.45783 -10.31803 -10.22049 -10.05340 -9.94549 -9.76103 -9.63159 -9.00540 -8.84197 -8.50164 -7.85543 -6.66636 -5.77286 -3.18873 0.75236 1.33921 2.74228 3.30938 3.38346 3.45149 3.46465 3.75734 4.46343 4.52568 4.61446 4.66547 4.84671 4.96687 5.22747 5.30684 5.39562 5.44143 5.53036 5.63189 5.79446 5.89168 5.92043 5.96982 6.12497 6.16690 6.21015 6.29176 6.31722 6.52207 6.53723 6.56890 6.69992 6.82274 6.91746 7.10238 7.24353 7.54657 7.64647 7.70117 7.82035 8.04933 8.44034 9.21829 9.85230 10.43586 11.31392 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.003602 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.253375 B = 7770.947423 C = 8509.112179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.044 3.956 12 N -0.526 5.526 13 C 0.084 3.916 14 C -0.036 4.036 15 C -0.108 4.108 16 C -0.087 4.087 17 C -0.150 4.150 18 C 0.566 3.434 19 N -0.853 5.853 20 O -0.544 6.544 21 C -0.057 4.057 22 C -0.120 4.120 23 C 0.031 3.969 24 C 0.179 3.821 25 H 0.254 0.746 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.401 0.599 35 H 0.403 0.597 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -17.338 -7.297 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.251 5.251 13 C -0.044 4.044 14 C -0.036 4.036 15 C -0.127 4.127 16 C -0.105 4.105 17 C -0.153 4.153 18 C 0.353 3.647 19 N -0.417 5.417 20 O -0.422 6.422 21 C -0.076 4.076 22 C -0.139 4.139 23 C -0.098 4.098 24 C 0.053 3.947 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.230 0.770 35 H 0.234 0.766 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.839 -16.782 -7.547 19.027 hybrid contribution 0.749 0.755 -0.258 1.094 sum -4.090 -16.027 -7.805 18.290 Atomic orbital electron populations 1.70032 1.05201 1.25484 1.53981 1.25026 0.95301 0.98345 1.01010 0.86290 0.79074 0.83732 0.77663 1.21498 1.21731 1.20481 1.19204 0.92578 0.84798 1.41692 0.91625 1.44135 1.34156 1.01264 1.52344 1.20968 0.97768 0.86499 0.92526 1.22651 0.89414 0.99493 0.96918 1.62018 1.34381 1.05746 1.22958 1.21150 0.92068 0.97110 0.94056 1.20079 0.96171 0.93835 0.93546 1.20943 0.93211 0.98850 0.99647 1.21200 0.96501 0.98141 0.94692 1.19783 0.94638 1.01626 0.99252 1.18356 0.84853 0.78907 0.82591 1.43757 1.19026 1.42692 1.36247 1.90807 1.77672 1.46445 1.27241 1.21214 0.92419 0.95304 0.98658 1.21124 0.96602 0.99589 0.96542 1.23015 0.98899 0.89094 0.98818 1.20849 0.88898 0.96549 0.88386 0.93601 0.95678 0.92585 0.91958 0.95335 0.94275 0.90224 0.85246 0.85891 0.76952 0.76619 0.84800 0.85387 0.95723 0.91648 0.95648 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 11.15 55.49 0.62 -25.80 16 2 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 3 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.99 9.63 -15.06 -0.15 -7.13 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.11 3.04 -172.01 -0.52 -15.64 16 10 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 11 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 12 N -0.53 -9.01 4.62 -235.77 -1.09 -10.10 16 13 C 0.08 1.12 5.12 -4.98 -0.03 1.09 16 14 C -0.04 -0.45 4.90 -104.53 -0.51 -0.97 16 15 C -0.11 -1.21 9.68 -39.64 -0.38 -1.59 16 16 C -0.09 -0.87 9.54 -39.18 -0.37 -1.24 16 17 C -0.15 -1.80 5.87 -104.97 -0.62 -2.41 16 18 C 0.57 6.86 8.05 -12.33 -0.10 6.76 16 19 N -0.85 -6.38 8.82 30.53 0.27 -6.11 16 20 O -0.54 -8.70 17.18 5.32 0.09 -8.61 16 21 C -0.06 -0.74 9.60 -39.18 -0.38 -1.11 16 22 C -0.12 -1.54 7.83 -39.64 -0.31 -1.85 16 23 C 0.03 0.60 5.33 -3.70 -0.02 0.58 16 24 C 0.18 4.37 5.42 -3.60 -0.02 4.35 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.13 7.95 -51.93 -0.41 0.71 16 28 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 0.79 6.41 -52.49 -0.34 0.46 16 34 H 0.40 1.88 6.86 -40.82 -0.28 1.60 16 35 H 0.40 2.44 8.93 -40.82 -0.36 2.07 16 36 H 0.13 1.71 7.65 -52.49 -0.40 1.31 16 37 H 0.13 1.56 7.93 -52.49 -0.42 1.14 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.19 5.65 -51.93 -0.29 0.90 16 40 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.09 2.38 6.12 -51.93 -0.32 2.07 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -33.32 332.21 -9.40 -42.72 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.73 Total: 1.49 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.01 Total: 0.29 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.72 Total: -57.65 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.32 -9.40 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051854789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.834 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds