Wall clock time and date at job start Tue Mar 31 2020 02:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46841 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47071 * 29.99501 * 3 2 1 6 6 H 1.48499 * 109.47488 * 150.00041 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46901 * 109.34060 * 306.17165 * 11 10 9 13 13 C 1.46895 * 111.00312 * 187.25724 * 12 11 10 14 14 C 1.50700 * 109.47395 * 169.99318 * 13 12 11 15 15 C 1.38354 * 119.85611 * 269.72969 * 14 13 12 16 16 C 1.37965 * 120.14081 * 179.72552 * 15 14 13 17 17 C 1.39572 * 119.85596 * 0.51845 * 16 15 14 18 18 C 1.47841 * 120.14824 * 179.77096 * 17 16 15 19 19 N 1.34778 * 119.99704 * 359.97438 * 18 17 16 20 20 O 1.21551 * 120.00703 * 179.97438 * 18 17 16 21 21 C 1.39578 * 119.71039 * 359.75664 * 17 16 15 22 22 C 1.37961 * 119.85175 * 359.97438 * 21 17 16 23 23 C 1.46896 * 111.27163 * 63.10432 * 12 11 10 24 24 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 25 25 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 27 27 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 28 28 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 29 29 H 1.08999 * 109.49733 * 66.12618 * 11 10 9 30 30 H 1.08997 * 109.47155 * 290.00028 * 13 12 11 31 31 H 1.09003 * 109.47600 * 49.99659 * 13 12 11 32 32 H 1.07994 * 119.93068 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.06857 * 180.27129 * 16 15 14 34 34 H 0.96998 * 120.00150 * 359.97438 * 19 18 17 35 35 H 0.97001 * 120.00338 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.07247 * 179.97438 * 21 17 16 37 37 H 1.08000 * 119.92372 * 179.97438 * 22 21 17 38 38 H 1.08993 * 109.49398 * 56.85765 * 23 12 11 39 39 H 1.09000 * 109.49317 * 176.94056 * 23 12 11 40 40 H 1.09010 * 109.62596 * 248.49763 * 24 9 7 41 41 H 1.09001 * 109.63431 * 9.07637 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7887 13 6 0.8202 -5.7005 -2.8292 14 6 -0.5462 -5.8879 -3.4364 15 6 -1.4179 -6.8173 -2.8974 16 6 -2.6724 -6.9897 -3.4451 17 6 -3.0574 -6.2317 -4.5519 18 6 -4.3983 -6.4147 -5.1471 19 7 -5.2517 -7.3156 -4.6212 20 8 -4.7311 -5.7529 -6.1108 21 6 -2.1711 -5.2998 -5.0943 22 6 -0.9216 -5.1333 -4.5337 23 6 0.4411 -3.3537 -2.3697 24 6 0.2050 -2.3428 -1.2424 25 1 -0.4850 0.8401 -0.0004 26 1 1.0922 -4.0631 0.8618 27 1 2.7857 -3.5345 0.6797 28 1 2.2375 -5.6174 -0.6423 29 1 2.8147 -4.2689 -1.6516 30 1 1.5231 -5.3938 -3.6037 31 1 1.1534 -6.6397 -2.3875 32 1 -1.1171 -7.4063 -2.0436 33 1 -3.3534 -7.7125 -3.0207 34 1 -4.9861 -7.8440 -3.8524 35 1 -6.1316 -7.4355 -5.0114 36 1 -2.4628 -4.7104 -5.9510 37 1 -0.2347 -4.4128 -4.9527 38 1 1.2742 -3.0204 -2.9884 39 1 -0.4577 -3.4331 -2.9813 40 1 -0.6904 -2.6184 -0.6851 41 1 0.0843 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051854789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:47 Heat of formation + Delta-G solvation = -4.507674 kcal Electronic energy + Delta-G solvation = -22667.777320 eV Core-core repulsion = 19354.030121 eV Total energy + Delta-G solvation = -3313.747198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19077 -40.03293 -38.88416 -36.24702 -34.90201 -33.62734 -32.11700 -31.91977 -31.51161 -28.88171 -26.63491 -24.67594 -24.31197 -23.48234 -23.01760 -21.28408 -20.80077 -19.15916 -18.72461 -17.84355 -17.03937 -16.64287 -16.30053 -16.20267 -15.90774 -15.81715 -15.41907 -15.32721 -15.09366 -14.91815 -14.66023 -14.29360 -14.15008 -13.48214 -13.17608 -13.02520 -12.89826 -12.62105 -12.56579 -12.26986 -12.07758 -11.95344 -11.81240 -11.58300 -11.43359 -11.18749 -10.75183 -10.59468 -9.90781 -9.80059 -9.24471 -8.68284 -7.87843 -5.32724 -0.17590 0.44725 1.45889 1.47371 1.56290 1.80537 2.50289 2.53685 2.78593 3.22189 3.28595 3.69949 3.74424 3.82656 3.97329 4.06971 4.26508 4.31734 4.37225 4.44931 4.53311 4.59494 4.69218 4.73198 4.77715 4.89254 4.92097 5.03714 5.09569 5.20349 5.29812 5.37370 5.38338 5.60328 5.63317 5.67352 5.84469 5.93860 6.17488 6.26054 6.37140 6.40470 7.12806 7.27261 7.84212 8.37989 9.18783 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.003602 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.253375 B = 7770.947423 C = 8509.112179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.055 3.945 12 N -0.533 5.533 13 C 0.089 3.911 14 C -0.050 4.050 15 C -0.108 4.108 16 C -0.075 4.075 17 C -0.160 4.160 18 C 0.562 3.438 19 N -0.828 5.828 20 O -0.593 6.593 21 C -0.076 4.076 22 C -0.130 4.130 23 C 0.051 3.949 24 C 0.188 3.812 25 H 0.249 0.751 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.418 0.582 35 H 0.413 0.587 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.018 0.982 39 H 0.075 0.925 40 H -0.005 1.005 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -19.925 -6.812 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.018 3.982 11 C -0.074 4.074 12 N -0.258 5.258 13 C -0.038 4.038 14 C -0.051 4.051 15 C -0.127 4.127 16 C -0.093 4.093 17 C -0.163 4.163 18 C 0.349 3.651 19 N -0.392 5.392 20 O -0.475 6.475 21 C -0.095 4.095 22 C -0.149 4.149 23 C -0.078 4.078 24 C 0.062 3.938 25 H 0.058 0.942 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.250 0.750 35 H 0.245 0.755 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.036 0.964 39 H 0.093 0.907 40 H 0.013 0.987 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.206 -19.447 -7.033 21.103 hybrid contribution 0.508 1.447 -0.359 1.575 sum -3.698 -18.001 -7.392 19.807 Atomic orbital electron populations 1.70198 1.06714 1.25795 1.55553 1.25802 0.96044 1.01533 1.01376 0.85259 0.78147 0.79505 0.77497 1.21349 1.22179 1.19118 1.19562 0.92940 0.86001 1.40852 0.91287 1.44424 1.34134 1.02366 1.53013 1.21158 0.97489 0.85384 0.94215 1.22511 0.89230 1.00370 0.95266 1.61924 1.34526 1.04985 1.24375 1.21210 0.92673 0.96727 0.93211 1.20153 0.96462 0.94720 0.93753 1.21271 0.93132 0.98311 0.99950 1.21586 0.96769 0.97722 0.93236 1.19939 0.94513 1.01820 1.00019 1.18477 0.85353 0.79138 0.82144 1.43548 1.18669 1.41013 1.35978 1.90785 1.78575 1.48625 1.29492 1.21248 0.93067 0.96193 0.98973 1.21152 0.96597 1.00009 0.97134 1.22595 0.99171 0.89508 0.96539 1.20565 0.87801 0.96200 0.89273 0.94158 0.96487 0.92005 0.87853 0.95710 0.93954 0.87257 0.82877 0.81815 0.74965 0.75486 0.85936 0.85665 0.96385 0.90678 0.98733 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 11.15 21.65 0.24 -56.45 16 2 C -0.05 -2.97 4.94 84.86 0.42 -2.55 16 3 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.26 -14.71 9.63 84.03 0.81 -13.90 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 N -0.62 -31.61 3.04 -698.13 -2.12 -33.73 16 10 C 0.14 5.87 6.69 86.35 0.58 6.45 16 11 C 0.06 1.75 5.62 86.38 0.49 2.24 16 12 N -0.53 -17.15 4.62 -899.85 -4.16 -21.31 16 13 C 0.09 2.09 5.12 85.56 0.44 2.53 16 14 C -0.05 -1.16 4.90 -19.81 -0.10 -1.26 16 15 C -0.11 -2.03 9.68 22.23 0.22 -1.82 16 16 C -0.07 -1.25 9.54 22.53 0.21 -1.03 16 17 C -0.16 -3.62 5.87 -20.09 -0.12 -3.73 16 18 C 0.56 13.04 8.05 86.79 0.70 13.73 16 19 N -0.83 -10.30 8.82 -175.61 -1.55 -11.85 16 20 O -0.59 -19.24 17.18 -3.87 -0.07 -19.30 16 21 C -0.08 -1.97 9.60 22.53 0.22 -1.76 16 22 C -0.13 -3.29 7.83 22.23 0.17 -3.11 16 23 C 0.05 1.99 5.33 86.38 0.46 2.45 16 24 C 0.19 9.45 5.42 86.35 0.47 9.91 16 25 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 28 H 0.10 2.49 7.99 -2.38 -0.02 2.48 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 1.00 8.07 -2.39 -0.02 0.98 16 31 H 0.11 1.97 7.91 -2.39 -0.02 1.95 16 32 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.16 1.27 6.41 -2.91 -0.02 1.26 16 34 H 0.42 2.33 6.86 -92.71 -0.64 1.70 16 35 H 0.41 4.04 8.93 -92.71 -0.83 3.22 16 36 H 0.12 3.36 7.65 -2.91 -0.02 3.34 16 37 H 0.13 3.09 7.93 -2.91 -0.02 3.07 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 2.76 5.65 -2.39 -0.01 2.74 16 40 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 41 H 0.05 2.98 6.12 -2.39 -0.01 2.96 16 Total: -1.00 -75.23 332.21 -1.07 -76.30 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.41 Total: 10.70 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.96 Total: 8.15 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -7.59 Total: -123.35 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.07 Total: -19.30 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.23 -1.07 -76.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051854789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.794 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds