Wall clock time and date at job start Tue Mar 31 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00433 * 2 1 4 4 C 1.38735 * 120.05800 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94482 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05363 * 0.27651 * 5 4 3 7 7 C 1.50700 * 119.94208 * 179.72460 * 6 5 4 8 8 C 1.53004 * 109.47275 * 95.08320 * 7 6 5 9 9 H 1.08999 * 110.36499 * 57.88715 * 8 7 6 10 10 C 1.54378 * 110.40856 * 295.53625 * 8 7 6 11 11 C 1.54261 * 105.05881 * 217.36904 * 10 8 7 12 12 C 1.54377 * 105.06203 * 359.97438 * 11 10 8 13 13 N 1.48560 * 110.40970 * 180.36467 * 8 7 6 14 14 C 1.46905 * 110.99965 * 277.81695 * 13 8 7 15 15 C 1.52996 * 109.46948 * 164.68965 * 14 13 8 16 16 C 1.50704 * 109.46835 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99911 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00335 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46968 * 90.00032 * 20 18 16 22 22 H 1.48500 * 109.47037 * 210.00171 * 20 18 16 23 23 H 1.48500 * 109.46845 * 329.99754 * 20 18 16 24 24 C 1.38266 * 120.11468 * 359.44701 * 6 5 4 25 25 C 1.38151 * 120.05186 * 0.55091 * 24 6 5 26 26 H 1.09006 * 109.46634 * 300.00169 * 1 2 3 27 27 H 1.09001 * 109.46692 * 59.99817 * 1 2 3 28 28 H 1.08993 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.02655 * 359.95382 * 4 3 2 30 30 H 1.07995 * 119.97518 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47332 * 215.08503 * 7 6 5 32 32 H 1.09004 * 109.46933 * 335.08117 * 7 6 5 33 33 H 1.08999 * 110.32900 * 336.26152 * 10 8 7 34 34 H 1.09000 * 110.32728 * 98.47295 * 10 8 7 35 35 H 1.09000 * 110.32791 * 118.89458 * 11 10 8 36 36 H 1.09001 * 110.32469 * 241.00250 * 11 10 8 37 37 H 1.09000 * 110.41350 * 142.63422 * 12 11 10 38 38 H 1.08999 * 110.41532 * 265.08039 * 12 11 10 39 39 H 1.08994 * 109.46877 * 284.69148 * 14 13 8 40 40 H 1.09001 * 109.46969 * 44.68603 * 14 13 8 41 41 H 1.08994 * 109.47481 * 299.99814 * 15 14 13 42 42 H 1.08996 * 109.46996 * 60.00400 * 15 14 13 43 43 H 0.97004 * 120.00356 * 179.97438 * 19 18 16 44 44 H 1.07998 * 119.97638 * 180.25473 * 24 6 5 45 45 H 1.07996 * 120.02514 * 179.70331 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4315 1.2847 -0.0005 5 6 4.0563 2.5167 -0.0011 6 6 3.3021 3.6756 0.0047 7 6 3.9864 5.0183 0.0104 8 6 4.1031 5.5373 -1.4242 9 1 3.1171 5.6089 -1.8831 10 6 5.0192 4.6154 -2.2573 11 6 5.8088 5.5646 -3.1821 12 6 5.3029 6.9801 -2.8304 13 7 4.7835 6.8579 -1.4436 14 6 3.8394 7.9410 -1.1379 15 6 4.6167 9.2125 -0.7916 16 6 3.6482 10.3235 -0.4774 17 1 2.5846 10.1411 -0.5208 18 6 4.1199 11.5731 -0.1355 19 7 5.4150 11.7954 -0.0830 20 14 2.9194 12.9505 0.2533 21 1 2.6106 12.9427 1.7058 22 1 3.5255 14.2546 -0.1170 23 1 1.6677 12.7490 -0.5200 24 6 1.9213 3.6047 -0.0005 25 6 1.2916 2.3751 0.0000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 4.0210 0.3797 -0.0002 30 1 5.1347 2.5749 -0.0011 31 1 3.4025 5.7212 0.6047 32 1 4.9820 4.9169 0.4423 33 1 5.7005 4.0690 -1.6052 34 1 4.4215 3.9216 -2.8484 35 1 6.8776 5.4841 -2.9838 36 1 5.6000 5.3355 -4.2271 37 1 6.1232 7.6970 -2.8668 38 1 4.5054 7.2788 -3.5107 39 1 3.2066 8.1271 -2.0056 40 1 3.2179 7.6528 -0.2901 41 1 5.2495 9.0265 0.0762 42 1 5.2381 9.5007 -1.6394 43 1 5.7469 12.6747 0.1571 44 1 1.3344 4.5114 -0.0001 45 1 0.2131 2.3202 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052133422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:31 Heat of formation + Delta-G solvation = -24.240558 kcal Electronic energy + Delta-G solvation = -22595.826407 eV Core-core repulsion = 19384.763870 eV Total energy + Delta-G solvation = -3211.062537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32095 -38.95765 -37.50249 -33.71499 -32.60595 -31.79476 -31.15527 -29.02699 -28.34651 -27.45581 -25.06437 -24.17448 -22.80736 -21.41536 -21.29874 -19.82074 -19.65233 -18.28108 -16.46780 -16.31782 -15.94497 -15.65903 -15.18216 -14.94722 -14.46866 -14.40818 -14.07752 -13.76492 -13.59830 -13.16854 -13.10542 -12.76733 -12.31529 -12.21501 -11.98889 -11.83147 -11.49740 -11.25464 -11.18330 -11.03480 -10.92090 -10.81195 -10.77585 -10.53218 -10.41915 -10.26332 -9.73451 -9.36834 -9.08919 -9.07910 -8.31089 -8.14645 -7.84148 -5.96937 -3.99456 1.25989 1.34410 3.07950 3.33087 3.39177 3.42112 3.66361 4.39253 4.54104 4.64029 4.74938 4.85217 4.86729 4.93140 5.03111 5.09020 5.17016 5.25682 5.28860 5.36715 5.38855 5.47891 5.57697 5.68749 5.75811 5.88291 5.97442 6.00706 6.11317 6.13771 6.18880 6.22238 6.30856 6.33550 6.39031 6.51064 6.53453 6.68502 6.71196 7.02625 7.23463 7.42885 7.54551 7.80402 7.93861 8.12508 8.46482 9.08238 9.64046 11.14380 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.003142 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.967311 B = 8909.101110 C = 9890.229601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.114 3.886 4 C -0.151 4.151 5 C -0.075 4.075 6 C -0.103 4.103 7 C -0.064 4.064 8 C 0.067 3.933 9 H 0.045 0.955 10 C -0.115 4.115 11 C -0.125 4.125 12 C 0.037 3.963 13 N -0.506 5.506 14 C 0.052 3.948 15 C 0.033 3.967 16 C -0.522 4.522 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.078 4.078 25 C -0.205 4.205 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.022 0.978 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.124 0.876 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -22.654 -2.285 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.069 3.931 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.104 4.104 7 C -0.102 4.102 8 C -0.042 4.042 9 H 0.063 0.937 10 C -0.153 4.153 11 C -0.163 4.163 12 C -0.091 4.091 13 N -0.230 5.230 14 C -0.075 4.075 15 C -0.005 4.005 16 C -0.561 4.561 17 H 0.071 0.929 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.096 4.096 25 C -0.224 4.224 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.142 0.858 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.332 -22.652 -1.851 23.344 hybrid contribution -1.672 1.028 -0.377 1.999 sum -7.004 -21.624 -2.228 22.839 Atomic orbital electron populations 1.23024 0.78602 1.03701 1.01373 1.86044 1.21223 1.27217 1.89039 1.19013 0.92403 0.83985 0.97658 1.20399 0.91265 0.98602 1.06673 1.20917 0.99884 0.90857 0.97688 1.19891 0.93420 0.95525 1.01582 1.20480 1.01035 0.92037 0.96656 1.22559 0.96078 0.90899 0.94637 0.93710 1.22319 0.98028 0.97263 0.97698 1.22314 1.00352 0.95053 0.98618 1.23063 0.99742 0.96690 0.89614 1.65421 1.33029 1.01126 1.23375 1.22517 0.93867 0.92575 0.98533 1.18992 0.95228 0.89033 0.97206 1.21211 0.92975 0.95350 1.46562 0.92912 1.24988 0.95037 0.98643 0.95622 1.69975 1.12118 1.22503 1.48600 0.86620 0.81239 0.81639 0.78638 1.20650 1.21235 1.19970 1.20905 0.94246 0.97022 0.97404 1.21200 0.99831 0.92384 1.09005 0.92709 0.92718 0.88429 0.85464 0.85277 0.90660 0.90162 0.91231 0.92144 0.91326 0.92077 0.89966 0.94343 0.95947 0.92311 0.95786 0.96706 0.93028 0.85755 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.41 10.50 -19.41 -0.20 -3.61 16 3 C 0.11 1.30 6.69 -39.21 -0.26 1.04 16 4 C -0.15 -1.66 9.99 -39.43 -0.39 -2.06 16 5 C -0.08 -0.84 8.91 -39.61 -0.35 -1.19 16 6 C -0.10 -1.26 4.76 -104.60 -0.50 -1.76 16 7 C -0.06 -0.89 4.96 -27.88 -0.14 -1.02 16 8 C 0.07 1.00 2.30 -66.07 -0.15 0.85 16 9 H 0.04 0.69 8.00 -51.93 -0.42 0.28 16 10 C -0.11 -1.47 5.71 -25.35 -0.14 -1.61 16 11 C -0.13 -1.66 7.00 -25.35 -0.18 -1.83 16 12 C 0.04 0.62 6.11 -2.17 -0.01 0.61 16 13 N -0.51 -9.26 4.99 -222.11 -1.11 -10.36 16 14 C 0.05 1.12 4.76 -3.82 -0.02 1.10 16 15 C 0.03 0.87 5.15 -27.88 -0.14 0.72 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.08 -0.92 9.72 -39.60 -0.38 -1.30 16 25 C -0.21 -2.24 9.04 -39.43 -0.36 -2.60 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.13 1.23 7.64 -52.49 -0.40 0.83 16 31 H 0.07 1.12 7.24 -51.93 -0.38 0.74 16 32 H 0.08 1.11 8.00 -51.93 -0.42 0.69 16 33 H 0.07 0.83 7.06 -51.93 -0.37 0.46 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 38 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 39 H 0.02 0.48 7.65 -51.93 -0.40 0.08 16 40 H 0.06 1.23 7.08 -51.93 -0.37 0.86 16 41 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.01 0.41 7.76 -51.93 -0.40 0.01 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -31.46 359.71 -10.21 -41.67 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.58 Total: -1.95 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.46 Total: -21.54 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.37 Total: -36.76 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.46 -10.21 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052133422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.434 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds