Wall clock time and date at job start Tue Mar 31 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00433 * 2 1 4 4 C 1.38735 * 120.05800 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94482 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05363 * 0.27651 * 5 4 3 7 7 C 1.50700 * 119.94208 * 179.72460 * 6 5 4 8 8 C 1.53004 * 109.47275 * 95.08320 * 7 6 5 9 9 H 1.08999 * 110.36499 * 57.88715 * 8 7 6 10 10 C 1.54378 * 110.40856 * 295.53625 * 8 7 6 11 11 C 1.54261 * 105.05881 * 217.36904 * 10 8 7 12 12 C 1.54377 * 105.06203 * 359.97438 * 11 10 8 13 13 N 1.48560 * 110.40970 * 180.36467 * 8 7 6 14 14 C 1.46905 * 110.99965 * 277.81695 * 13 8 7 15 15 C 1.52996 * 109.46948 * 164.68965 * 14 13 8 16 16 C 1.50704 * 109.46835 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99911 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00335 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46968 * 90.00032 * 20 18 16 22 22 H 1.48500 * 109.47037 * 210.00171 * 20 18 16 23 23 H 1.48500 * 109.46845 * 329.99754 * 20 18 16 24 24 C 1.38266 * 120.11468 * 359.44701 * 6 5 4 25 25 C 1.38151 * 120.05186 * 0.55091 * 24 6 5 26 26 H 1.09006 * 109.46634 * 300.00169 * 1 2 3 27 27 H 1.09001 * 109.46692 * 59.99817 * 1 2 3 28 28 H 1.08993 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.02655 * 359.95382 * 4 3 2 30 30 H 1.07995 * 119.97518 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47332 * 215.08503 * 7 6 5 32 32 H 1.09004 * 109.46933 * 335.08117 * 7 6 5 33 33 H 1.08999 * 110.32900 * 336.26152 * 10 8 7 34 34 H 1.09000 * 110.32728 * 98.47295 * 10 8 7 35 35 H 1.09000 * 110.32791 * 118.89458 * 11 10 8 36 36 H 1.09001 * 110.32469 * 241.00250 * 11 10 8 37 37 H 1.09000 * 110.41350 * 142.63422 * 12 11 10 38 38 H 1.08999 * 110.41532 * 265.08039 * 12 11 10 39 39 H 1.08994 * 109.46877 * 284.69148 * 14 13 8 40 40 H 1.09001 * 109.46969 * 44.68603 * 14 13 8 41 41 H 1.08994 * 109.47481 * 299.99814 * 15 14 13 42 42 H 1.08996 * 109.46996 * 60.00400 * 15 14 13 43 43 H 0.97004 * 120.00356 * 179.97438 * 19 18 16 44 44 H 1.07998 * 119.97638 * 180.25473 * 24 6 5 45 45 H 1.07996 * 120.02514 * 179.70331 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4315 1.2847 -0.0005 5 6 4.0563 2.5167 -0.0011 6 6 3.3021 3.6756 0.0047 7 6 3.9864 5.0183 0.0104 8 6 4.1031 5.5373 -1.4242 9 1 3.1171 5.6089 -1.8831 10 6 5.0192 4.6154 -2.2573 11 6 5.8088 5.5646 -3.1821 12 6 5.3029 6.9801 -2.8304 13 7 4.7835 6.8579 -1.4436 14 6 3.8394 7.9410 -1.1379 15 6 4.6167 9.2125 -0.7916 16 6 3.6482 10.3235 -0.4774 17 1 2.5846 10.1411 -0.5208 18 6 4.1199 11.5731 -0.1355 19 7 5.4150 11.7954 -0.0830 20 14 2.9194 12.9505 0.2533 21 1 2.6106 12.9427 1.7058 22 1 3.5255 14.2546 -0.1170 23 1 1.6677 12.7490 -0.5200 24 6 1.9213 3.6047 -0.0005 25 6 1.2916 2.3751 0.0000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 4.0210 0.3797 -0.0002 30 1 5.1347 2.5749 -0.0011 31 1 3.4025 5.7212 0.6047 32 1 4.9820 4.9169 0.4423 33 1 5.7005 4.0690 -1.6052 34 1 4.4215 3.9216 -2.8484 35 1 6.8776 5.4841 -2.9838 36 1 5.6000 5.3355 -4.2271 37 1 6.1232 7.6970 -2.8668 38 1 4.5054 7.2788 -3.5107 39 1 3.2066 8.1271 -2.0056 40 1 3.2179 7.6528 -0.2901 41 1 5.2495 9.0265 0.0762 42 1 5.2381 9.5007 -1.6394 43 1 5.7469 12.6747 0.1571 44 1 1.3344 4.5114 -0.0001 45 1 0.2131 2.3202 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052133422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:30 Heat of formation + Delta-G solvation = -42.234581 kcal Electronic energy + Delta-G solvation = -22596.606686 eV Core-core repulsion = 19384.763870 eV Total energy + Delta-G solvation = -3211.842816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16165 -40.14246 -38.41270 -35.66891 -33.84793 -33.37983 -31.99602 -30.40599 -29.72363 -28.17610 -26.43395 -25.82672 -23.64536 -23.03670 -22.25639 -21.37433 -20.81614 -19.04257 -18.52747 -17.26997 -16.74448 -16.63162 -16.52659 -16.40515 -16.09783 -15.51190 -15.11710 -14.96912 -14.61059 -14.45606 -14.18361 -14.09769 -13.63900 -13.52905 -13.32915 -12.96406 -12.82539 -12.70376 -12.67869 -12.43625 -12.18377 -12.07217 -11.98755 -11.70108 -11.65365 -11.49205 -11.39431 -11.27819 -11.17680 -10.55115 -9.92062 -9.34715 -8.98945 -8.20034 -6.31931 0.42427 0.46753 1.39250 1.41190 1.52001 2.39789 2.41275 2.78293 3.13013 3.16266 3.69633 3.86788 3.88469 3.97342 4.09845 4.13951 4.25450 4.34199 4.39566 4.41842 4.47266 4.50401 4.54545 4.61288 4.66457 4.72151 4.76147 4.83106 4.88255 5.02996 5.06697 5.08813 5.14478 5.23032 5.26549 5.33572 5.38310 5.43178 5.46609 5.64305 5.76389 5.80461 5.85656 6.07901 6.18928 6.33024 6.47612 6.85467 7.37275 8.92164 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.003142 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.967311 B = 8909.101110 C = 9890.229601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.108 3.892 4 C -0.158 4.158 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.057 4.057 8 C 0.068 3.932 9 H 0.041 0.959 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.031 3.969 13 N -0.522 5.522 14 C 0.071 3.929 15 C 0.043 3.957 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 C -0.089 4.089 25 C -0.208 4.208 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.020 0.980 40 H 0.061 0.939 41 H -0.009 1.009 42 H -0.013 1.013 43 H 0.264 0.736 44 H 0.125 0.875 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 -24.245 -2.571 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.063 3.937 4 C -0.176 4.176 5 C -0.091 4.091 6 C -0.115 4.115 7 C -0.094 4.094 8 C -0.040 4.040 9 H 0.059 0.941 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.097 4.097 13 N -0.246 5.246 14 C -0.057 4.057 15 C 0.005 3.995 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.107 4.107 25 C -0.226 4.226 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.010 0.990 42 H 0.005 0.995 43 H 0.073 0.927 44 H 0.143 0.857 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.688 -24.268 -2.142 25.264 hybrid contribution -1.259 1.456 -0.284 1.946 sum -7.947 -22.812 -2.427 24.278 Atomic orbital electron populations 1.23306 0.76741 1.05457 1.02036 1.86031 1.23215 1.26852 1.88850 1.19217 0.92814 0.84448 0.97229 1.20634 0.91538 0.99089 1.06362 1.21052 1.00614 0.90436 0.97040 1.19753 0.93660 0.94892 1.03181 1.20353 1.00792 0.92718 0.95577 1.22635 0.96120 0.89342 0.95912 0.94114 1.22301 0.97824 0.96842 0.97523 1.22289 1.00717 0.92360 1.00038 1.23108 0.98985 0.98835 0.88789 1.65324 1.32758 1.01829 1.24667 1.22110 0.93486 0.91624 0.98454 1.18801 0.94667 0.91395 0.94592 1.21634 0.93601 0.96370 1.46778 0.92272 1.25977 0.96988 1.01575 0.95152 1.70117 1.14319 1.23400 1.49330 0.85431 0.78874 0.77822 0.78812 1.19653 1.20657 1.18720 1.21013 0.94290 0.97586 0.97777 1.21376 1.00871 0.91856 1.08537 0.92040 0.92007 0.86268 0.84044 0.83805 0.92467 0.90396 0.90001 0.90478 0.90575 0.89847 0.92111 0.94688 0.96156 0.92082 0.99041 0.99452 0.92745 0.85741 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.44 10.50 -92.38 -0.97 -7.40 16 3 C 0.11 2.26 6.69 22.51 0.15 2.41 16 4 C -0.16 -3.17 9.99 22.37 0.22 -2.94 16 5 C -0.07 -1.50 8.91 22.25 0.20 -1.30 16 6 C -0.11 -2.67 4.76 -19.85 -0.09 -2.76 16 7 C -0.06 -1.54 4.96 29.85 0.15 -1.40 16 8 C 0.07 1.99 2.30 45.06 0.10 2.09 16 9 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 10 C -0.11 -2.50 5.71 31.49 0.18 -2.32 16 11 C -0.12 -2.87 7.00 31.49 0.22 -2.65 16 12 C 0.03 1.04 6.11 86.44 0.53 1.57 16 13 N -0.52 -19.47 4.99 -856.64 -4.27 -23.74 16 14 C 0.07 3.14 4.76 86.30 0.41 3.55 16 15 C 0.04 2.38 5.15 29.85 0.15 2.53 16 16 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.00 0.06 5.46 84.65 0.46 0.52 16 19 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 20 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 C -0.09 -2.01 9.72 22.26 0.22 -1.79 16 25 C -0.21 -4.20 9.04 22.37 0.20 -3.99 16 26 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 27 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 28 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.14 2.42 7.64 -2.91 -0.02 2.40 16 31 H 0.06 1.74 7.24 -2.39 -0.02 1.72 16 32 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 33 H 0.08 1.73 7.06 -2.39 -0.02 1.72 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.27 8.00 -2.39 -0.02 2.25 16 38 H 0.03 1.19 7.68 -2.39 -0.02 1.17 16 39 H 0.02 0.89 7.65 -2.39 -0.02 0.87 16 40 H 0.06 2.62 7.08 -2.39 -0.02 2.60 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H -0.01 -0.77 7.76 -2.39 -0.02 -0.79 16 43 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 44 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 45 H 0.14 2.23 6.30 -2.91 -0.02 2.21 16 Total: -1.00 -68.82 359.71 2.46 -66.36 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.94 Total: 12.43 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 4.45 Total: -36.82 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.99 Total: -81.48 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.97 Total: -7.40 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.82 2.46 -66.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052133422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.125 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds