Wall clock time and date at job start Tue Mar 31 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47239 * 2 1 4 4 C 1.35899 * 117.00374 * 180.02562 * 3 2 1 5 5 C 1.38730 * 120.06024 * 180.02562 * 4 3 2 6 6 C 1.38148 * 119.94562 * 179.97438 * 5 4 3 7 7 C 1.38267 * 120.05534 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.94322 * 180.02562 * 7 6 5 9 9 H 1.08996 * 110.36505 * 17.64378 * 8 7 6 10 10 C 1.54387 * 110.50874 * 255.23231 * 8 7 6 11 11 C 1.54255 * 105.05670 * 217.31801 * 10 8 7 12 12 C 1.54383 * 105.06278 * 0.02562 * 11 10 8 13 13 N 1.48553 * 104.59483 * 23.84951 * 12 11 10 14 14 C 1.46899 * 111.00117 * 200.96181 * 13 12 11 15 15 C 1.52997 * 109.47254 * 285.42139 * 14 13 12 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38263 * 120.11243 * 0.27605 * 7 6 5 25 25 C 1.38152 * 120.05273 * 359.45036 * 24 7 6 26 26 H 1.08994 * 109.47542 * 59.99520 * 1 2 3 27 27 H 1.09001 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47102 * 299.99540 * 1 2 3 29 29 H 1.09008 * 109.46903 * 240.00860 * 2 1 3 30 30 H 1.08994 * 109.47542 * 120.00480 * 2 1 3 31 31 H 1.08000 * 120.02375 * 359.95728 * 5 4 3 32 32 H 1.07993 * 119.96971 * 180.02562 * 6 5 4 33 33 H 1.09004 * 110.32109 * 336.21346 * 10 8 7 34 34 H 1.08990 * 110.32427 * 98.31770 * 10 8 7 35 35 H 1.09004 * 110.32293 * 118.89780 * 11 10 8 36 36 H 1.09002 * 110.32538 * 241.10329 * 11 10 8 37 37 H 1.09003 * 110.40424 * 265.07051 * 12 11 10 38 38 H 1.08993 * 110.41069 * 142.63520 * 12 11 10 39 39 H 1.09002 * 109.47043 * 45.42210 * 14 13 12 40 40 H 1.09001 * 109.47354 * 165.42272 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.07995 * 119.97657 * 179.70555 * 24 7 6 45 45 H 1.08004 * 120.02623 * 180.27583 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2550 2.9851 -0.0001 7 6 6.0962 1.8878 0.0000 8 6 7.5902 2.0852 0.0005 9 1 7.8386 3.1002 0.3106 10 6 8.1752 1.7910 -1.3976 11 6 9.5274 1.0991 -1.1287 12 6 9.6454 1.0328 0.4092 13 7 8.2429 1.0947 0.8952 14 6 8.1900 1.5354 2.2955 15 6 8.6412 0.3926 3.2072 16 6 8.5875 0.8448 4.6438 17 1 8.2635 1.8470 4.8826 18 6 8.9510 -0.0212 5.6532 19 7 9.3450 -1.2417 5.3623 20 14 8.8851 0.5396 7.4338 21 1 7.4943 0.9293 7.7789 22 1 9.3217 -0.5700 8.3188 23 1 9.7862 1.7053 7.6193 24 6 5.5690 0.6096 -0.0058 25 6 4.1997 0.4260 -0.0001 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.2284 3.6642 0.0001 32 1 5.6692 3.9825 0.0008 33 1 7.5134 1.1261 -1.9526 34 1 8.3262 2.7196 -1.9479 35 1 9.5294 0.0945 -1.5518 36 1 10.3439 1.6882 -1.5463 37 1 10.2154 1.8831 0.7836 38 1 10.1126 0.0967 0.7146 39 1 8.8505 2.3916 2.4322 40 1 7.1687 1.8203 2.5485 41 1 7.9807 -0.4637 3.0706 42 1 9.6624 0.1075 2.9544 43 1 9.6004 -1.8511 6.0726 44 1 6.2280 -0.2459 -0.0105 45 1 3.7884 -0.5727 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053140453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:22 Heat of formation + Delta-G solvation = -23.207714 kcal Electronic energy + Delta-G solvation = -22871.936325 eV Core-core repulsion = 19660.918576 eV Total energy + Delta-G solvation = -3211.017750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16487 -38.91363 -36.97216 -33.65254 -32.18927 -31.80280 -30.82963 -30.49043 -28.41749 -26.98202 -24.35538 -24.01647 -22.64827 -21.53216 -21.26764 -19.90399 -19.65956 -18.18871 -16.44876 -16.18289 -16.14132 -15.54706 -15.09300 -14.48219 -14.43152 -14.03995 -13.67811 -13.47906 -13.41652 -13.27867 -13.02797 -12.67107 -12.46148 -12.24436 -12.00784 -11.72209 -11.59416 -11.57663 -11.15107 -10.93867 -10.88385 -10.77728 -10.64706 -10.53063 -10.47429 -10.31088 -9.75751 -9.35526 -9.10449 -8.78823 -8.30397 -7.90297 -7.87057 -5.96521 -3.98650 1.53542 1.63359 3.19894 3.35222 3.39316 3.42031 3.92237 4.41415 4.56358 4.76839 4.79810 4.92974 4.98957 5.02068 5.10147 5.11912 5.24903 5.33490 5.36060 5.39381 5.52819 5.59086 5.60308 5.66747 5.80937 5.84121 5.89190 5.98083 6.02329 6.16424 6.18645 6.24944 6.36761 6.43761 6.48618 6.53326 6.62442 6.88290 6.93953 7.03214 7.42243 7.51603 7.53382 7.79530 7.93587 8.11625 8.47297 9.08428 9.64711 11.14820 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.004389 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.400387 B = 6377.865397 C = 8113.551925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.321 6.321 4 C 0.121 3.879 5 C -0.157 4.157 6 C -0.079 4.079 7 C -0.099 4.099 8 C 0.100 3.900 9 H 0.053 0.947 10 C -0.113 4.113 11 C -0.124 4.124 12 C 0.036 3.964 13 N -0.502 5.502 14 C 0.054 3.946 15 C 0.034 3.966 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.042 4.042 25 C -0.211 4.211 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.135 0.865 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 4.517 -15.778 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.076 3.924 5 C -0.176 4.176 6 C -0.098 4.098 7 C -0.100 4.100 8 C -0.009 4.009 9 H 0.071 0.929 10 C -0.151 4.151 11 C -0.162 4.162 12 C -0.092 4.092 13 N -0.226 5.226 14 C -0.073 4.073 15 C -0.004 4.004 16 C -0.560 4.560 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.061 4.061 25 C -0.229 4.229 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.152 0.848 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.861 3.963 -15.695 19.494 hybrid contribution 0.462 0.803 1.292 1.590 sum -10.398 4.766 -14.403 18.393 Atomic orbital electron populations 1.21766 0.92995 1.02719 1.03335 1.22745 0.95590 0.82256 1.01539 1.86018 1.19455 1.29070 1.88985 1.18966 0.81923 0.94271 0.97209 1.20260 0.94962 0.94560 1.07793 1.20797 0.92120 0.98514 0.98359 1.19579 0.94491 0.93110 1.02825 1.21464 0.90613 0.95199 0.93593 0.92901 1.22324 0.96679 1.00270 0.95854 1.22323 0.96681 1.00825 0.96403 1.23058 0.90867 1.01783 0.93509 1.65416 1.11172 1.42589 1.03398 1.22483 1.00059 0.98734 0.86025 1.18989 0.96520 0.92818 0.92050 1.21170 1.44529 0.98707 0.91637 0.92954 1.24975 0.95352 0.94908 0.98976 1.69966 1.45048 1.05662 1.32616 0.86680 0.78459 0.78149 0.84848 1.20254 1.21268 1.20299 1.20873 0.93581 0.97637 0.93962 1.21261 0.94540 0.97745 1.09400 0.91721 0.90484 0.91558 0.92174 0.91884 0.85718 0.85863 0.91139 0.91795 0.91263 0.91864 0.94139 0.89781 0.96010 0.92157 0.95878 0.96710 0.93004 0.84756 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.15 0.38 -0.79 16 2 C 0.05 0.54 5.46 37.15 0.20 0.75 16 3 O -0.32 -4.27 10.14 -19.42 -0.20 -4.46 16 4 C 0.12 1.73 6.69 -39.22 -0.26 1.47 16 5 C -0.16 -2.16 9.99 -39.43 -0.39 -2.55 16 6 C -0.08 -1.09 9.67 -39.60 -0.38 -1.48 16 7 C -0.10 -1.50 4.53 -104.60 -0.47 -1.98 16 8 C 0.10 1.51 2.45 -67.21 -0.16 1.35 16 9 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 10 C -0.11 -1.43 6.52 -25.35 -0.17 -1.59 16 11 C -0.12 -1.59 7.00 -25.35 -0.18 -1.76 16 12 C 0.04 0.59 5.91 -2.18 -0.01 0.57 16 13 N -0.50 -9.13 4.33 -223.49 -0.97 -10.09 16 14 C 0.05 1.18 4.71 -3.83 -0.02 1.16 16 15 C 0.03 0.89 5.09 -27.89 -0.14 0.75 16 16 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.04 -0.65 9.14 -39.60 -0.36 -1.01 16 25 C -0.21 -3.01 9.04 -39.43 -0.36 -3.37 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 7.66 -51.92 -0.40 0.14 16 30 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 33 H 0.07 0.87 7.71 -51.93 -0.40 0.47 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 38 H 0.08 1.48 7.85 -51.93 -0.41 1.07 16 39 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 40 H 0.06 1.35 7.78 -51.93 -0.40 0.94 16 41 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.01 0.41 7.47 -51.93 -0.39 0.02 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 44 H 0.13 2.15 7.76 -52.49 -0.41 1.75 16 45 H 0.12 1.53 6.30 -52.48 -0.33 1.20 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -31.37 362.38 -10.42 -41.79 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.69 Total: -0.97 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -2.74 Total: -22.23 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.23 Total: -36.55 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.37 -10.42 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053140453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.583 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds