Wall clock time and date at job start Tue Mar 31 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 C 1.50697 * 109.46959 * 180.02562 * 13 12 2 15 15 C 1.38884 * 120.75500 * 89.99541 * 14 13 12 16 16 C 1.38020 * 119.33423 * 179.97438 * 15 14 13 17 17 N 1.31974 * 120.85385 * 359.97438 * 16 15 14 18 18 C 1.32403 * 121.62520 * 0.02562 * 17 16 15 19 19 N 1.38997 * 119.70532 * 180.02562 * 18 17 16 20 20 C 1.46850 * 110.99769 * 124.20929 * 19 18 17 21 21 C 1.53031 * 109.52506 * 174.16058 * 20 19 18 22 22 C 1.53118 * 109.27718 * 59.17920 * 21 20 19 23 23 C 1.53120 * 109.16107 * 302.34531 * 22 21 20 24 24 C 1.46841 * 111.00247 * 0.02562 * 19 18 17 25 25 C 1.38299 * 120.74205 * 269.70911 * 14 13 12 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 30 30 H 1.00892 * 111.00435 * 321.04633 * 12 2 1 31 31 H 1.09003 * 109.46525 * 299.99167 * 13 12 2 32 32 H 1.08991 * 109.47692 * 59.99249 * 13 12 2 33 33 H 1.08005 * 120.33146 * 359.95409 * 15 14 13 34 34 H 1.07995 * 119.57192 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.46264 * 294.17614 * 20 19 18 36 36 H 1.09005 * 109.45822 * 54.14476 * 20 19 18 37 37 H 1.09001 * 109.50559 * 299.24193 * 21 20 19 38 38 H 1.09002 * 109.50463 * 179.12221 * 21 20 19 39 39 H 1.09002 * 109.52259 * 182.44005 * 22 21 20 40 40 H 1.09002 * 109.57452 * 62.28611 * 22 21 20 41 41 H 1.09002 * 109.50494 * 297.71554 * 23 22 21 42 42 H 1.09004 * 109.53290 * 177.61766 * 23 22 21 43 43 H 1.09002 * 109.46339 * 305.85758 * 24 19 18 44 44 H 1.09003 * 109.46390 * 65.83317 * 24 19 18 45 45 H 1.08007 * 120.45512 * 0.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5873 -0.5220 -3.5560 15 6 1.7040 -1.1606 -4.4167 16 6 2.1982 -1.8335 -5.5157 17 7 3.4951 -1.8759 -5.7565 18 6 4.3690 -1.2800 -4.9600 19 7 5.7262 -1.3497 -5.2519 20 6 6.3123 -0.0071 -5.3531 21 6 7.8280 -0.1227 -5.5297 22 6 8.1294 -0.9283 -6.7964 23 6 7.4673 -2.3046 -6.6861 24 6 5.9620 -2.1252 -6.4763 25 6 3.9402 -0.5796 -3.8368 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7090 1.1614 3.4844 30 1 1.4495 -1.4979 -1.4100 31 1 1.0871 0.6162 -2.5525 32 1 2.7588 1.0461 -2.1183 33 1 0.6410 -1.1312 -4.2277 34 1 1.5148 -2.3311 -6.1877 35 1 5.8852 0.5119 -6.2113 36 1 6.0942 0.5538 -4.4443 37 1 8.2575 -0.6293 -4.6654 38 1 8.2608 0.8736 -5.6204 39 1 9.2073 -1.0501 -6.9027 40 1 7.7347 -0.4028 -7.6660 41 1 7.8911 -2.8455 -5.8400 42 1 7.6425 -2.8678 -7.6028 43 1 5.4894 -3.1031 -6.3836 44 1 5.5369 -1.5958 -7.3291 45 1 4.6547 -0.0908 -3.1909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065541643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:15 Heat of formation + Delta-G solvation = 18.153077 kcal Electronic energy + Delta-G solvation = -22723.256810 eV Core-core repulsion = 19546.325350 eV Total energy + Delta-G solvation = -3176.931460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72936 -39.49913 -37.89375 -35.29374 -34.57012 -33.42042 -31.87816 -30.58275 -30.12887 -27.27170 -26.48507 -25.63015 -24.43596 -23.22285 -22.24161 -21.97561 -20.63290 -18.69867 -17.98437 -17.53118 -16.83315 -16.77612 -16.26637 -15.92757 -15.69622 -15.40215 -15.18262 -14.99246 -14.70323 -14.40369 -14.16396 -14.12293 -13.71587 -13.55416 -13.34895 -13.07122 -12.87416 -12.76727 -12.62947 -12.31873 -12.18874 -12.15200 -11.92921 -11.73771 -11.42678 -11.41007 -11.10390 -10.83276 -10.54167 -10.48687 -10.42761 -9.05558 -8.98928 -8.10445 -6.21536 0.22165 0.30233 1.43483 1.44899 1.52777 2.43678 2.49041 2.83943 3.17997 3.47460 3.67442 3.80718 3.93067 3.94656 4.00832 4.10958 4.16879 4.25397 4.30302 4.38239 4.52378 4.61340 4.62764 4.64364 4.75577 4.80242 4.84973 4.87511 4.89090 4.94002 5.04948 5.07726 5.09927 5.20673 5.26049 5.37642 5.43083 5.48634 5.60408 5.69140 5.80045 5.82706 6.21445 6.25441 6.60261 6.75919 6.91960 7.03557 7.48311 8.94768 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.003280 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.175805 B = 8535.039697 C = 9367.217035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H 0.005 0.995 4 C -0.518 4.518 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.681 5.681 13 C 0.101 3.899 14 C -0.014 4.014 15 C -0.197 4.197 16 C 0.122 3.878 17 N -0.538 5.538 18 C 0.300 3.700 19 N -0.485 5.485 20 C 0.057 3.943 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.118 4.118 24 C 0.072 3.928 25 C -0.178 4.178 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.332 0.668 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.148 0.852 34 H 0.186 0.814 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 -2.516 -20.766 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.023 0.977 4 C -0.557 4.557 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.311 5.311 13 C -0.028 4.028 14 C -0.022 4.022 15 C -0.219 4.219 16 C -0.035 4.035 17 N -0.254 5.254 18 C 0.069 3.931 19 N -0.203 5.203 20 C -0.068 4.068 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.055 4.055 25 C -0.201 4.201 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.202 0.798 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.342 -2.982 -20.819 23.437 hybrid contribution -1.622 0.616 1.221 2.121 sum 8.720 -2.365 -19.599 21.581 Atomic orbital electron populations 1.22246 0.99707 0.99375 1.00339 1.18948 0.90235 0.92774 0.87112 0.97661 1.21417 1.30596 1.12540 0.91154 0.92976 1.25683 0.95421 0.95859 1.01772 1.69995 1.37906 1.24129 1.24102 0.85598 0.78640 0.78708 0.78581 1.20008 1.20829 1.19715 1.60702 1.58212 1.09309 1.02904 1.20832 0.99257 0.94681 0.88056 1.20188 0.93283 0.94430 0.94340 1.22120 1.01554 1.01227 0.96958 1.22926 0.90755 0.94434 0.95369 1.67624 1.04105 1.23093 1.30546 1.19945 0.89416 0.92522 0.91256 1.59125 1.07729 1.16877 1.36580 1.22342 0.96626 0.86307 1.01557 1.21635 0.92725 1.01812 0.99095 1.21608 1.01486 0.95254 0.97370 1.21679 0.92988 0.98194 1.02671 1.21938 0.97346 0.97786 0.88403 1.21440 0.96186 1.04195 0.98311 0.95218 0.94887 0.91860 0.92927 0.85054 0.94006 0.91424 0.83424 0.79761 0.93904 0.90265 0.91347 0.89209 0.89961 0.91718 0.91702 0.89523 0.91145 0.94018 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.43 8.94 71.98 0.64 -6.79 16 2 C 0.22 10.96 2.57 44.17 0.11 11.08 16 3 H 0.01 0.30 7.80 -2.39 -0.02 0.28 16 4 C -0.52 -29.07 8.84 25.60 0.23 -28.85 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.75 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 N -0.68 -28.88 6.22 -499.47 -3.11 -31.99 16 13 C 0.10 3.54 5.66 85.56 0.48 4.02 16 14 C -0.01 -0.43 5.43 -19.70 -0.11 -0.53 16 15 C -0.20 -5.12 9.81 22.37 0.22 -4.91 16 16 C 0.12 2.95 11.17 84.62 0.95 3.90 16 17 N -0.54 -15.08 8.68 -193.26 -1.68 -16.76 16 18 C 0.30 8.75 6.41 133.07 0.85 9.60 16 19 N -0.49 -12.32 4.68 -701.98 -3.29 -15.60 16 20 C 0.06 1.19 5.24 86.32 0.45 1.65 16 21 C -0.11 -1.81 6.09 30.64 0.19 -1.62 16 22 C -0.12 -1.62 6.00 30.67 0.18 -1.44 16 23 C -0.12 -1.89 6.09 30.65 0.19 -1.70 16 24 C 0.07 1.57 4.65 86.33 0.40 1.97 16 25 C -0.18 -5.52 8.88 22.50 0.20 -5.32 16 26 H 0.03 1.21 7.45 -2.39 -0.02 1.20 16 27 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.33 13.42 8.46 -89.70 -0.76 12.66 16 31 H 0.04 1.40 7.40 -2.39 -0.02 1.38 16 32 H 0.07 2.47 8.01 -2.39 -0.02 2.45 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.72 6.66 -2.38 -0.02 1.71 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.72 7.70 -2.39 -0.02 1.70 16 44 H 0.04 0.93 8.11 -2.39 -0.02 0.91 16 45 H 0.13 4.04 7.13 -2.91 -0.02 4.02 16 Total: -1.00 -62.94 355.02 -0.16 -63.10 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.20 Total: 25.60 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.44 Total: -17.89 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -7.83 Total: -117.10 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.94 -0.16 -63.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065541643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.252 kcal (2) G-P(sol) polarization free energy of solvation -62.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds