Wall clock time and date at job start Tue Mar 31 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38248 * 120.00288 * 2 1 4 4 C 1.38212 * 120.00195 * 179.76661 * 3 2 1 5 5 C 1.38264 * 119.99639 * 0.53201 * 4 3 2 6 6 C 1.50705 * 119.99606 * 179.74290 * 5 4 3 7 7 C 1.53000 * 109.46830 * 264.72249 * 6 5 4 8 8 C 1.50705 * 109.46830 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99965 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00157 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99791 * 0.02562 * 10 8 7 12 12 C 1.46495 * 120.00361 * 180.02562 * 10 8 7 13 13 H 1.09000 * 109.47378 * 0.02562 * 12 10 8 14 14 C 1.53009 * 109.47194 * 240.00449 * 12 10 8 15 15 C 1.50702 * 109.47571 * 120.00380 * 12 10 8 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 12 10 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 12 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 C 1.38203 * 120.00112 * 359.47054 * 5 4 3 24 24 C 1.50698 * 120.00229 * 180.27695 * 23 5 4 25 25 C 1.38217 * 119.99768 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47174 * 269.97791 * 1 2 3 27 27 H 1.09007 * 109.46976 * 29.98067 * 1 2 3 28 28 H 1.09006 * 109.47353 * 149.97361 * 1 2 3 29 29 H 1.07999 * 120.00188 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.00375 * 180.27327 * 4 3 2 31 31 H 1.09005 * 109.46717 * 144.72636 * 6 5 4 32 32 H 1.08998 * 109.47345 * 24.72749 * 6 5 4 33 33 H 1.09005 * 109.47155 * 60.00655 * 7 6 5 34 34 H 1.08998 * 109.47565 * 300.00365 * 7 6 5 35 35 H 1.08993 * 109.47215 * 269.99521 * 11 10 8 36 36 H 1.09001 * 109.46606 * 30.00126 * 11 10 8 37 37 H 1.09004 * 109.46774 * 149.99850 * 11 10 8 38 38 H 1.08990 * 109.47127 * 59.99623 * 14 12 10 39 39 H 1.08994 * 109.46846 * 179.97438 * 14 12 10 40 40 H 1.09001 * 109.46592 * 299.99497 * 14 12 10 41 41 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 42 42 H 1.09000 * 109.47093 * 89.99899 * 24 23 5 43 43 H 1.08993 * 109.47397 * 209.99419 * 24 23 5 44 44 H 1.08994 * 109.47030 * 329.99998 * 24 23 5 45 45 H 1.08002 * 119.99885 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0049 5 6 4.2716 -0.0002 -0.0014 6 6 5.7787 -0.0002 -0.0019 7 6 6.2881 -0.1257 -1.4391 8 6 7.7951 -0.1250 -1.4397 9 8 8.4019 -0.0337 -0.3936 10 7 8.4686 -0.2269 -2.6027 11 6 7.7356 -0.3378 -3.8663 12 6 9.9336 -0.2269 -2.6033 13 1 10.2973 -0.1375 -1.5796 14 6 10.4432 0.9547 -3.4310 15 6 10.4358 -1.5146 -3.2037 16 1 9.7339 -2.2589 -3.5499 17 6 11.7913 -1.7430 -3.3102 18 7 12.2296 -2.8692 -3.8292 19 14 13.0054 -0.4561 -2.7108 20 1 13.3321 0.4721 -3.8230 21 1 12.4031 0.3081 -1.5890 22 1 14.2460 -1.1253 -2.2439 23 6 3.5806 -1.1971 -0.0014 24 6 4.3340 -2.5022 -0.0019 25 6 2.1980 -1.1970 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5143 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1325 0.0093 31 1 6.1422 -0.8422 0.5873 32 1 6.1422 0.9311 0.4325 33 1 5.9246 0.7163 -2.0283 34 1 5.9246 -1.0569 -1.8735 35 1 7.5540 -1.3890 -4.0900 36 1 6.7832 0.1854 -3.7810 37 1 8.3244 0.1077 -4.6682 38 1 10.0800 1.8861 -2.9968 39 1 11.5332 0.9550 -3.4311 40 1 10.0795 0.8649 -4.4546 41 1 13.1832 -3.0316 -3.9005 42 1 4.5159 -2.8171 1.0256 43 1 3.7447 -3.2617 -0.5156 44 1 5.2862 -2.3718 -0.5160 45 1 1.6579 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071799975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:27 Heat of formation + Delta-G solvation = -25.362276 kcal Electronic energy + Delta-G solvation = -22849.959457 eV Core-core repulsion = 19638.848279 eV Total energy + Delta-G solvation = -3211.111178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96773 -39.07745 -35.68274 -34.75560 -32.83686 -32.44227 -31.36182 -30.17163 -27.33696 -26.94070 -26.21005 -25.10483 -23.68171 -22.13186 -20.94869 -19.96182 -18.24841 -17.04479 -16.36516 -16.17265 -15.67649 -15.41526 -15.04234 -14.77941 -14.37411 -14.10201 -13.45770 -13.34582 -13.20956 -13.03806 -12.90042 -12.65151 -12.53679 -12.24998 -12.18546 -12.12702 -12.05339 -11.80019 -11.58962 -11.30490 -11.23240 -11.07189 -10.86404 -10.69834 -10.66964 -10.13649 -9.64804 -9.34148 -9.03484 -8.81126 -8.63536 -8.42927 -7.70927 -6.14491 -4.14940 1.25271 1.32200 3.23194 3.30379 3.36947 3.39797 3.59191 3.87629 4.35363 4.64792 4.68631 4.82671 4.88721 5.05936 5.15942 5.21380 5.21565 5.29552 5.35420 5.39294 5.48589 5.57180 5.61904 5.62326 5.65813 5.80052 5.86585 5.92680 6.02488 6.04374 6.19358 6.21359 6.26812 6.33533 6.34377 6.41804 6.48970 6.49763 6.67915 6.84655 6.97139 7.13120 7.36433 7.63932 8.20300 8.48905 8.85499 8.93736 9.46850 10.98360 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.003187 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.499725 B = 8784.282577 C = 8995.233088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.127 4.127 4 C -0.109 4.109 5 C -0.082 4.082 6 C -0.066 4.066 7 C -0.132 4.132 8 C 0.505 3.495 9 O -0.555 6.555 10 N -0.589 5.589 11 C 0.087 3.913 12 C 0.228 3.772 13 H 0.062 0.938 14 C -0.161 4.161 15 C -0.526 4.526 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.263 1.263 22 H -0.294 1.294 23 C -0.075 4.075 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.266 0.734 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.364 6.580 4.599 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.082 4.082 6 C -0.104 4.104 7 C -0.172 4.172 8 C 0.292 3.708 9 O -0.434 6.434 10 N -0.320 5.320 11 C -0.057 4.057 12 C 0.126 3.874 13 H 0.080 0.920 14 C -0.219 4.219 15 C -0.565 4.565 16 H 0.096 0.904 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.188 1.188 22 H -0.222 1.222 23 C -0.075 4.075 24 C -0.179 4.179 25 C -0.139 4.139 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.863 6.509 5.071 22.435 hybrid contribution 0.736 0.571 -0.020 0.932 sum -20.127 7.080 5.051 21.926 Atomic orbital electron populations 1.20765 0.91474 1.02568 1.02087 1.19856 0.95833 0.93246 1.00374 1.20958 0.94153 0.97326 1.02028 1.21058 0.94035 0.97620 1.00030 1.19846 0.95767 0.92583 1.00040 1.20348 0.89493 1.04392 0.96141 1.21669 0.93264 1.03967 0.98305 1.20472 0.89505 0.76965 0.83872 1.90639 1.70351 1.51189 1.31246 1.47885 1.08211 1.70309 1.05561 1.21599 0.95489 1.01435 0.87191 1.19281 0.75542 0.94507 0.98058 0.91986 1.22456 1.00259 0.98098 1.01098 1.21168 0.92796 1.01332 1.41174 0.90394 1.24870 0.98115 0.95430 0.94373 1.69877 1.14673 1.24171 1.44634 0.86913 0.80652 0.81417 0.79689 1.20435 1.18794 1.22151 1.19812 0.93513 0.95088 0.99114 1.20910 1.00569 0.93773 1.02642 1.20883 0.93455 0.97430 1.02104 0.91418 0.91722 0.91708 0.86399 0.86049 0.89962 0.90396 0.89412 0.89170 0.92819 0.92641 0.90881 0.94835 0.93191 0.92552 0.92455 0.91021 0.91610 0.90660 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.91 5.88 -104.63 -0.62 -1.53 16 3 C -0.13 -1.27 9.70 -39.59 -0.38 -1.65 16 4 C -0.11 -1.21 9.68 -39.58 -0.38 -1.59 16 5 C -0.08 -1.00 5.13 -104.62 -0.54 -1.53 16 6 C -0.07 -0.90 3.94 -27.88 -0.11 -1.01 16 7 C -0.13 -1.87 4.04 -27.88 -0.11 -1.99 16 8 C 0.50 9.89 7.67 -10.98 -0.08 9.80 16 9 O -0.55 -12.95 15.31 5.56 0.09 -12.87 16 10 N -0.59 -12.06 2.75 -175.25 -0.48 -12.54 16 11 C 0.09 1.40 9.48 59.85 0.57 1.97 16 12 C 0.23 5.54 2.23 -69.08 -0.15 5.38 16 13 H 0.06 1.68 5.95 -51.93 -0.31 1.37 16 14 C -0.16 -3.49 8.65 37.16 0.32 -3.16 16 15 C -0.53 -14.63 8.95 -34.44 -0.31 -14.94 16 16 H 0.08 2.33 7.89 -52.49 -0.41 1.91 16 17 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 18 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 19 Si 0.88 21.99 24.37 -169.99 -4.14 17.85 16 20 H -0.28 -6.60 6.88 56.52 0.39 -6.21 16 21 H -0.26 -6.48 6.52 56.52 0.37 -6.12 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 23 C -0.08 -0.87 5.88 -104.63 -0.62 -1.48 16 24 C -0.12 -1.30 9.22 36.00 0.33 -0.97 16 25 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.40 8.09 -51.92 -0.42 -0.02 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.08 1.20 6.95 -51.93 -0.36 0.84 16 32 H 0.08 1.09 8.01 -51.93 -0.42 0.68 16 33 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 34 H 0.09 1.19 6.87 -51.93 -0.36 0.83 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 37 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 1.13 3.28 -51.93 -0.17 0.96 16 40 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.07 0.89 5.43 -51.93 -0.28 0.60 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -32.68 352.79 -7.75 -40.43 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.11 Total: 0.85 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.19 Total: -12.72 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.29 Total: -38.86 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.68 -7.75 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071799975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.067 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds