Wall clock time and date at job start Tue Mar 31 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38248 * 120.00288 * 2 1 4 4 C 1.38212 * 120.00195 * 179.76661 * 3 2 1 5 5 C 1.38264 * 119.99639 * 0.53201 * 4 3 2 6 6 C 1.50705 * 119.99606 * 179.74290 * 5 4 3 7 7 C 1.53000 * 109.46830 * 264.72249 * 6 5 4 8 8 C 1.50705 * 109.46830 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99965 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00157 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99791 * 0.02562 * 10 8 7 12 12 C 1.46495 * 120.00361 * 180.02562 * 10 8 7 13 13 H 1.09000 * 109.47378 * 0.02562 * 12 10 8 14 14 C 1.53009 * 109.47194 * 240.00449 * 12 10 8 15 15 C 1.50702 * 109.47571 * 120.00380 * 12 10 8 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 12 10 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 12 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 C 1.38203 * 120.00112 * 359.47054 * 5 4 3 24 24 C 1.50698 * 120.00229 * 180.27695 * 23 5 4 25 25 C 1.38217 * 119.99768 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47174 * 269.97791 * 1 2 3 27 27 H 1.09007 * 109.46976 * 29.98067 * 1 2 3 28 28 H 1.09006 * 109.47353 * 149.97361 * 1 2 3 29 29 H 1.07999 * 120.00188 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.00375 * 180.27327 * 4 3 2 31 31 H 1.09005 * 109.46717 * 144.72636 * 6 5 4 32 32 H 1.08998 * 109.47345 * 24.72749 * 6 5 4 33 33 H 1.09005 * 109.47155 * 60.00655 * 7 6 5 34 34 H 1.08998 * 109.47565 * 300.00365 * 7 6 5 35 35 H 1.08993 * 109.47215 * 269.99521 * 11 10 8 36 36 H 1.09001 * 109.46606 * 30.00126 * 11 10 8 37 37 H 1.09004 * 109.46774 * 149.99850 * 11 10 8 38 38 H 1.08990 * 109.47127 * 59.99623 * 14 12 10 39 39 H 1.08994 * 109.46846 * 179.97438 * 14 12 10 40 40 H 1.09001 * 109.46592 * 299.99497 * 14 12 10 41 41 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 42 42 H 1.09000 * 109.47093 * 89.99899 * 24 23 5 43 43 H 1.08993 * 109.47397 * 209.99419 * 24 23 5 44 44 H 1.08994 * 109.47030 * 329.99998 * 24 23 5 45 45 H 1.08002 * 119.99885 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0049 5 6 4.2716 -0.0002 -0.0014 6 6 5.7787 -0.0002 -0.0019 7 6 6.2881 -0.1257 -1.4391 8 6 7.7951 -0.1250 -1.4397 9 8 8.4019 -0.0337 -0.3936 10 7 8.4686 -0.2269 -2.6027 11 6 7.7356 -0.3378 -3.8663 12 6 9.9336 -0.2269 -2.6033 13 1 10.2973 -0.1375 -1.5796 14 6 10.4432 0.9547 -3.4310 15 6 10.4358 -1.5146 -3.2037 16 1 9.7339 -2.2589 -3.5499 17 6 11.7913 -1.7430 -3.3102 18 7 12.2296 -2.8692 -3.8292 19 14 13.0054 -0.4561 -2.7108 20 1 13.3321 0.4721 -3.8230 21 1 12.4031 0.3081 -1.5890 22 1 14.2460 -1.1253 -2.2439 23 6 3.5806 -1.1971 -0.0014 24 6 4.3340 -2.5022 -0.0019 25 6 2.1980 -1.1970 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5143 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1325 0.0093 31 1 6.1422 -0.8422 0.5873 32 1 6.1422 0.9311 0.4325 33 1 5.9246 0.7163 -2.0283 34 1 5.9246 -1.0569 -1.8735 35 1 7.5540 -1.3890 -4.0900 36 1 6.7832 0.1854 -3.7810 37 1 8.3244 0.1077 -4.6682 38 1 10.0800 1.8861 -2.9968 39 1 11.5332 0.9550 -3.4311 40 1 10.0795 0.8649 -4.4546 41 1 13.1832 -3.0316 -3.9005 42 1 4.5159 -2.8171 1.0256 43 1 3.7447 -3.2617 -0.5156 44 1 5.2862 -2.3718 -0.5160 45 1 1.6579 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071799975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:26 Heat of formation + Delta-G solvation = -44.070860 kcal Electronic energy + Delta-G solvation = -22850.770722 eV Core-core repulsion = 19638.848279 eV Total energy + Delta-G solvation = -3211.922443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08748 -40.35542 -37.35492 -35.75608 -34.77545 -33.38283 -32.68657 -31.59097 -28.13369 -27.88598 -27.64193 -27.12364 -24.79766 -23.00220 -22.51886 -20.81772 -19.84127 -18.94872 -17.96443 -17.37697 -17.16850 -16.49877 -16.36988 -15.98822 -15.58867 -15.05767 -14.93235 -14.59334 -14.45620 -14.12413 -14.01107 -13.94119 -13.79775 -13.68153 -13.37614 -13.28393 -13.17246 -13.02073 -12.94042 -12.78814 -12.55700 -12.19331 -12.08974 -12.06023 -11.72169 -11.64697 -11.59184 -11.35349 -10.81301 -10.64591 -9.60752 -9.39460 -9.26051 -8.36469 -6.40900 0.44109 0.53008 1.24546 1.34348 1.43087 1.76448 2.26390 2.30424 2.84165 2.98891 3.61320 3.88556 4.01109 4.06654 4.08589 4.17591 4.25999 4.37324 4.44731 4.49875 4.51900 4.56503 4.61549 4.65001 4.72917 4.75422 4.77792 4.85603 4.88576 4.96569 4.98252 5.02365 5.05544 5.09172 5.19666 5.32377 5.34962 5.41773 5.48999 5.60675 5.72612 5.74898 5.82633 6.18922 6.19848 6.61155 6.75296 7.20863 7.38859 8.79747 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.003187 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.499725 B = 8784.282577 C = 8995.233088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.057 4.057 7 C -0.116 4.116 8 C 0.496 3.504 9 O -0.600 6.600 10 N -0.598 5.598 11 C 0.083 3.917 12 C 0.229 3.771 13 H 0.030 0.970 14 C -0.154 4.154 15 C -0.526 4.526 16 H 0.044 0.956 17 C 0.022 3.978 18 N -0.940 5.940 19 Si 0.942 3.058 20 H -0.253 1.253 21 H -0.263 1.263 22 H -0.296 1.296 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.129 4.129 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.268 0.732 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.682 8.523 4.160 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.156 4.156 8 C 0.286 3.714 9 O -0.482 6.482 10 N -0.328 5.328 11 C -0.059 4.059 12 C 0.126 3.874 13 H 0.048 0.952 14 C -0.212 4.212 15 C -0.564 4.564 16 H 0.062 0.938 17 C -0.177 4.177 18 N -0.580 5.580 19 Si 0.769 3.231 20 H -0.178 1.178 21 H -0.188 1.188 22 H -0.223 1.223 23 C -0.087 4.087 24 C -0.178 4.178 25 C -0.147 4.147 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.218 8.463 4.604 25.137 hybrid contribution 1.332 -0.110 0.146 1.345 sum -21.885 8.353 4.750 23.902 Atomic orbital electron populations 1.20818 0.89445 1.03587 1.02939 1.20242 0.97419 0.92916 0.98929 1.21253 0.93848 0.98454 1.01384 1.21233 0.94756 0.97549 0.99861 1.19719 0.94534 0.93488 1.02044 1.20193 0.90911 1.03077 0.95349 1.21639 0.88738 1.05742 0.99441 1.21431 0.91648 0.75496 0.82792 1.90611 1.71763 1.53054 1.32812 1.47984 1.07001 1.70326 1.07507 1.21832 0.97051 1.01759 0.85277 1.18955 0.78312 0.93912 0.96250 0.95235 1.22310 0.99611 0.97653 1.01580 1.21382 0.92410 1.02258 1.40397 0.93772 1.25656 1.00070 0.97342 0.94595 1.70003 1.15250 1.26241 1.46477 0.85968 0.78032 0.79289 0.79843 1.17798 1.18759 1.22324 1.19941 0.94246 0.94963 0.99524 1.20895 1.00003 0.94223 1.02656 1.21124 0.93061 0.98588 1.01922 0.90538 0.90595 0.90879 0.84282 0.85133 0.91920 0.91259 0.86499 0.87880 0.93553 0.88142 0.90701 0.92482 0.94050 0.90972 0.92250 0.91028 0.90156 0.92245 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.23 0.71 -0.50 16 2 C -0.10 -1.61 5.88 -19.87 -0.12 -1.73 16 3 C -0.13 -2.28 9.70 22.27 0.22 -2.07 16 4 C -0.12 -2.34 9.68 22.27 0.22 -2.12 16 5 C -0.10 -2.25 5.13 -19.86 -0.10 -2.35 16 6 C -0.06 -1.55 3.94 29.85 0.12 -1.43 16 7 C -0.12 -3.14 4.04 29.85 0.12 -3.02 16 8 C 0.50 19.39 7.67 87.66 0.67 20.06 16 9 O -0.60 -28.73 15.31 -3.02 -0.05 -28.78 16 10 N -0.60 -24.20 2.75 -826.78 -2.28 -26.47 16 11 C 0.08 2.55 9.48 127.77 1.21 3.76 16 12 C 0.23 11.16 2.23 44.25 0.10 11.26 16 13 H 0.03 1.64 5.95 -2.39 -0.01 1.62 16 14 C -0.15 -6.37 8.65 71.99 0.62 -5.75 16 15 C -0.53 -29.93 8.95 25.60 0.23 -29.70 16 16 H 0.04 2.74 7.89 -2.91 -0.02 2.72 16 17 C 0.02 1.28 5.45 84.65 0.46 1.74 16 18 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 19 Si 0.94 45.59 24.37 68.60 1.67 47.26 16 20 H -0.25 -11.17 6.88 99.48 0.68 -10.49 16 21 H -0.26 -12.62 6.52 99.48 0.65 -11.97 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 C -0.09 -1.89 5.88 -19.87 -0.12 -2.01 16 24 C -0.12 -2.53 9.22 71.24 0.66 -1.87 16 25 C -0.13 -2.41 9.36 22.27 0.21 -2.21 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 28 H 0.07 0.69 8.09 -2.38 -0.02 0.67 16 29 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.06 1.90 6.95 -2.38 -0.02 1.88 16 32 H 0.07 1.95 8.01 -2.39 -0.02 1.93 16 33 H 0.12 2.50 7.40 -2.38 -0.02 2.48 16 34 H 0.10 2.56 6.87 -2.39 -0.02 2.55 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 37 H 0.07 2.27 6.43 -2.38 -0.02 2.25 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.78 3.28 -2.39 -0.01 1.77 16 40 H 0.07 2.73 6.66 -2.39 -0.02 2.71 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 44 H 0.06 1.41 5.43 -2.39 -0.01 1.39 16 45 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -73.03 352.79 5.75 -67.28 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.89 Total: 16.58 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 5.21 Total: -17.93 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.98 Total: -84.40 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.67 Total: 47.26 kcal Total: -73.03 5.75 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071799975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.209 kcal (2) G-P(sol) polarization free energy of solvation -73.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds