Wall clock time and date at job start Tue Mar 31 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00219 * 2 1 4 4 H 1.48503 * 109.47497 * 240.00471 * 3 2 1 5 5 H 1.48502 * 109.47256 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47106 * 120.00114 * 3 2 1 7 7 C 1.37884 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00189 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47246 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00137 * 270.27555 * 10 9 7 12 12 O 1.21592 * 120.00180 * 4.71566 * 11 10 9 13 13 N 1.34775 * 120.00293 * 184.71728 * 11 10 9 14 14 C 1.46500 * 120.00460 * 185.05552 * 13 11 10 15 15 C 1.53000 * 109.47331 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47025 * 179.97438 * 15 14 13 17 17 C 1.38225 * 119.61695 * 124.72849 * 16 15 14 18 18 C 1.38623 * 119.15947 * 179.75440 * 17 16 15 19 19 C 1.38677 * 118.42163 * 0.50763 * 18 17 16 20 20 C 1.38181 * 119.16043 * 359.73171 * 19 18 17 21 21 N 1.31853 * 119.61668 * 304.99962 * 16 15 14 22 22 C 1.46495 * 119.99825 * 89.99866 * 10 9 7 23 23 C 1.53005 * 117.50214 * 2.91101 * 22 10 9 24 24 C 1.53002 * 117.50207 * 294.25260 * 22 10 9 25 25 H 0.97000 * 119.99762 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47392 * 59.99958 * 9 7 2 27 27 H 1.09001 * 109.47566 * 299.99904 * 9 7 2 28 28 H 0.97001 * 120.00067 * 5.05124 * 13 11 10 29 29 H 1.08998 * 109.47241 * 300.00007 * 14 13 11 30 30 H 1.08999 * 109.47067 * 59.99808 * 14 13 11 31 31 H 1.08992 * 109.46846 * 299.99939 * 15 14 13 32 32 H 1.08999 * 109.47077 * 59.99967 * 15 14 13 33 33 H 1.07998 * 120.41877 * 359.97438 * 17 16 15 34 34 H 1.08007 * 120.78743 * 180.26314 * 18 17 16 35 35 H 1.07997 * 120.41769 * 179.70778 * 19 18 17 36 36 H 1.07996 * 119.61512 * 179.97438 * 20 19 18 37 37 H 1.08999 * 115.55280 * 148.57935 * 22 10 9 38 38 H 1.08998 * 117.49392 * 0.02562 * 23 22 10 39 39 H 1.09002 * 117.50022 * 145.01405 * 23 22 10 40 40 H 1.09000 * 117.49806 * 214.97976 * 24 22 10 41 41 H 1.09003 * 117.49721 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6442 -4.1208 -1.1694 12 8 2.3201 -3.6011 -2.2198 13 7 3.4448 -5.2050 -1.1730 14 6 4.0142 -5.6911 -2.4323 15 6 4.8787 -6.9235 -2.1591 16 6 5.4638 -7.4239 -3.4546 17 6 6.8328 -7.5738 -3.5730 18 6 7.3605 -8.0397 -4.7673 19 6 6.4884 -8.3285 -5.8061 20 6 5.1316 -8.1490 -5.6157 21 7 4.6644 -7.7085 -4.4638 22 6 2.6799 -4.1700 1.2663 23 6 2.0954 -3.5916 2.5566 24 6 3.5370 -3.2679 2.1566 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6247 -2.5572 0.8897 28 1 3.6441 -5.6635 -0.3418 29 1 3.2085 -5.9565 -3.1168 30 1 4.6279 -4.9091 -2.8793 31 1 5.6843 -6.6577 -1.4748 32 1 4.2653 -7.7057 -1.7118 33 1 7.4828 -7.3345 -2.7444 34 1 8.4258 -8.1707 -4.8871 35 1 6.8650 -8.6888 -6.7520 36 1 4.4458 -8.3713 -6.4199 37 1 2.9153 -5.2342 1.2533 38 1 1.3556 -2.7968 2.4618 39 1 1.9464 -4.2753 3.3924 40 1 4.3359 -3.7387 2.7295 41 1 3.7463 -2.2599 1.7986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076094075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:47 Heat of formation + Delta-G solvation = 14.354123 kcal Electronic energy + Delta-G solvation = -22229.795030 eV Core-core repulsion = 18916.865741 eV Total energy + Delta-G solvation = -3312.929290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27608 -40.94094 -38.38523 -36.56897 -35.13352 -34.02223 -33.48596 -33.13979 -30.29567 -28.81916 -25.60491 -24.63668 -24.22201 -23.42348 -22.94676 -22.39572 -20.52290 -19.18277 -18.62435 -17.76816 -17.31389 -17.18764 -16.60477 -16.44707 -16.18342 -15.80209 -15.40206 -15.38929 -14.95355 -14.64601 -14.26949 -14.13621 -13.74052 -13.54898 -13.29954 -13.01667 -12.80009 -12.67538 -12.52454 -12.43580 -12.20530 -12.06497 -11.91776 -11.52254 -11.41825 -10.90553 -10.77383 -10.60113 -10.33198 -10.08890 -9.87718 -9.13416 -8.18484 -6.32077 0.19169 0.41428 1.34749 1.39493 1.46321 1.82826 2.25145 2.39904 2.86636 3.04016 3.08966 3.12268 3.42840 3.82391 4.01222 4.02352 4.08036 4.12756 4.18801 4.24336 4.28810 4.35523 4.53092 4.72203 4.80223 4.87308 4.90127 4.98591 5.03568 5.09344 5.19911 5.27955 5.29431 5.31360 5.51190 5.57848 5.60230 5.83763 5.85463 6.10527 6.21013 6.75577 7.10835 7.23503 7.33924 7.77041 8.87496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.003304 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.866130 B = 8471.481907 C = 9019.727339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.282 1.282 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.277 3.723 10 N -0.594 5.594 11 C 0.696 3.304 12 O -0.644 6.644 13 N -0.730 5.730 14 C 0.155 3.845 15 C -0.066 4.066 16 C 0.109 3.891 17 C -0.169 4.169 18 C -0.078 4.078 19 C -0.176 4.176 20 C 0.080 3.920 21 N -0.519 5.519 22 C 0.057 3.943 23 C -0.175 4.175 24 C -0.183 4.183 25 H 0.266 0.734 26 H -0.010 1.010 27 H 0.035 0.965 28 H 0.411 0.589 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.062 -20.097 -1.116 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.207 1.207 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.155 3.845 10 N -0.327 5.327 11 C 0.398 3.602 12 O -0.525 6.525 13 N -0.389 5.389 14 C 0.030 3.970 15 C -0.104 4.104 16 C -0.028 4.028 17 C -0.189 4.189 18 C -0.104 4.104 19 C -0.195 4.195 20 C -0.077 4.077 21 N -0.229 5.229 22 C -0.047 4.047 23 C -0.213 4.213 24 C -0.222 4.222 25 H 0.075 0.925 26 H 0.008 0.992 27 H 0.052 0.948 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.091 0.909 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.764 -19.490 -1.766 25.129 hybrid contribution 0.640 1.051 -0.261 1.258 sum 16.403 -18.439 -2.027 24.762 Atomic orbital electron populations 1.70043 1.07428 1.28036 1.51430 1.25807 0.95772 1.02800 0.94773 0.85547 0.78387 0.78513 0.78837 1.20737 1.20264 1.18395 1.21615 0.92923 0.91847 1.50413 0.93294 1.18670 0.87278 0.82953 0.95590 1.46850 1.46615 1.35630 1.03626 1.16119 0.79528 0.80965 0.83633 1.90853 1.64290 1.64757 1.32636 1.44919 1.52551 1.29978 1.11472 1.20893 0.96000 0.95076 0.84994 1.20665 1.00198 0.95900 0.93602 1.21238 0.91238 0.95935 0.94427 1.22305 0.95214 1.00946 1.00396 1.22040 1.01998 0.94177 0.92144 1.22494 0.94163 1.01311 1.01559 1.23150 0.95372 0.94720 0.94420 1.67440 1.41841 1.12071 1.01502 1.21922 1.04716 0.96961 0.81133 1.23273 0.97167 1.03654 0.97192 1.23418 0.94641 1.00918 1.03234 0.92506 0.99209 0.94764 0.75121 0.93666 0.94370 0.86634 0.88217 0.82191 0.81711 0.82046 0.81566 0.82673 0.90895 0.84743 0.84923 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 4 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.53 -31.51 8.70 25.60 0.22 -31.29 16 8 H 0.05 2.92 7.20 -2.91 -0.02 2.90 16 9 C 0.28 15.58 4.66 85.63 0.40 15.98 16 10 N -0.59 -26.87 2.79 -820.06 -2.28 -29.15 16 11 C 0.70 32.26 8.26 179.06 1.48 33.73 16 12 O -0.64 -37.56 15.98 -4.01 -0.06 -37.63 16 13 N -0.73 -23.56 5.44 -478.54 -2.61 -26.17 16 14 C 0.16 4.70 5.54 86.38 0.48 5.18 16 15 C -0.07 -1.25 5.73 29.85 0.17 -1.08 16 16 C 0.11 2.31 6.18 42.55 0.26 2.57 16 17 C -0.17 -2.56 9.71 22.36 0.22 -2.35 16 18 C -0.08 -0.97 10.18 22.47 0.23 -0.75 16 19 C -0.18 -2.40 10.11 22.36 0.23 -2.17 16 20 C 0.08 1.54 11.18 84.67 0.95 2.49 16 21 N -0.52 -12.99 9.88 -183.89 -1.82 -14.81 16 22 C 0.06 1.81 5.98 44.99 0.27 2.08 16 23 C -0.18 -5.41 9.74 30.62 0.30 -5.12 16 24 C -0.18 -5.54 10.28 30.62 0.31 -5.23 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H -0.01 -0.67 7.50 -2.38 -0.02 -0.69 16 27 H 0.03 1.93 5.99 -2.39 -0.01 1.92 16 28 H 0.41 9.51 6.29 -92.71 -0.58 8.93 16 29 H 0.04 1.64 7.95 -2.39 -0.02 1.62 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.12 1.48 7.87 -2.39 -0.02 1.46 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.16 1.50 7.95 -2.91 -0.02 1.48 16 34 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.16 3.37 6.59 -2.39 -0.02 3.36 16 38 H 0.07 2.92 6.11 -2.39 -0.01 2.90 16 39 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 2.68 6.93 -2.39 -0.02 2.66 16 Total: -1.00 -85.46 345.38 1.98 -83.48 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.46 Total: 18.28 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.98 Total: 14.93 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.42 Total: -127.58 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.06 Total: -37.63 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -85.46 1.98 -83.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076094075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.838 kcal (2) G-P(sol) polarization free energy of solvation -85.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds