Wall clock time and date at job start Tue Mar 31 2020 03:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38064 * 119.57588 * 2 1 4 4 C 1.38837 * 119.32911 * 179.72755 * 3 2 1 5 5 C 1.38341 * 118.50781 * 0.27723 * 4 3 2 6 6 C 1.39094 * 119.09856 * 0.02562 * 5 4 3 7 7 N 1.39004 * 119.70605 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00231 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47386 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.62684 * 308.09907 * 9 8 7 11 11 C 1.55137 * 110.70819 * 71.40211 * 9 8 7 12 12 C 1.54900 * 101.65548 * 154.03697 * 11 9 8 13 13 N 1.47841 * 104.79827 * 322.92770 * 12 11 9 14 14 C 1.46897 * 111.00394 * 146.36135 * 13 12 11 15 15 H 1.08997 * 109.47505 * 299.11466 * 14 13 12 16 16 C 1.52999 * 109.46884 * 59.11128 * 14 13 12 17 17 C 1.50702 * 109.47171 * 179.10622 * 14 13 12 18 18 H 1.08000 * 120.00297 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99934 * 180.02562 * 17 14 13 20 20 N 1.31522 * 119.99811 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 119.99972 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47610 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47412 * 120.00222 * 21 19 17 24 24 H 1.48510 * 109.47088 * 240.00002 * 21 19 17 25 25 C 1.47450 * 108.56642 * 24.09453 * 13 12 11 26 26 N 1.31944 * 119.57353 * 180.32415 * 2 1 3 27 27 H 1.08991 * 109.47456 * 89.99939 * 1 2 3 28 28 H 1.09002 * 109.46672 * 210.00023 * 1 2 3 29 29 H 1.08999 * 109.46800 * 329.99428 * 1 2 3 30 30 H 1.08003 * 120.33098 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.74358 * 180.29880 * 4 3 2 32 32 H 1.07993 * 120.45190 * 180.02562 * 5 4 3 33 33 H 0.97007 * 119.99915 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46749 * 300.00009 * 8 7 6 35 35 H 1.09002 * 109.47281 * 59.99005 * 8 7 6 36 36 H 1.09002 * 110.98523 * 272.12637 * 11 9 8 37 37 H 1.08997 * 110.99308 * 35.93942 * 11 9 8 38 38 H 1.08999 * 110.37690 * 204.09741 * 12 11 9 39 39 H 1.09002 * 110.46862 * 81.80417 * 12 11 9 40 40 H 1.09000 * 109.47727 * 185.55266 * 16 14 13 41 41 H 1.09002 * 109.47191 * 305.55325 * 16 14 13 42 42 H 1.09000 * 109.47319 * 65.55048 * 16 14 13 43 43 H 0.96997 * 119.99914 * 180.02562 * 20 19 17 44 44 H 1.08992 * 109.88787 * 239.60941 * 25 13 12 45 45 H 1.09003 * 109.88961 * 118.41714 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2007 0.0000 4 6 3.5768 1.1948 0.0058 5 6 4.2319 -0.0237 0.0054 6 6 3.4817 -1.1950 -0.0011 7 7 4.1268 -2.4263 -0.0021 8 6 5.5905 -2.4863 0.0044 9 6 6.0411 -3.9484 0.0025 10 1 5.5490 -4.5029 0.8016 11 6 5.7666 -4.6052 -1.3759 12 6 6.8343 -5.7270 -1.4062 13 7 8.0216 -5.1359 -0.7530 14 6 8.7710 -6.1528 -0.0032 15 1 8.1339 -6.5739 0.7744 16 6 9.2153 -7.2645 -0.9560 17 6 9.9833 -5.5189 0.6290 18 1 10.1774 -4.4659 0.4884 19 6 10.8446 -6.2834 1.3872 20 7 10.6085 -7.5659 1.5581 21 14 12.3468 -5.4976 2.1715 22 1 12.3854 -4.0531 1.8294 23 1 12.2751 -5.6557 3.6463 24 1 13.5747 -6.1595 1.6618 25 6 7.5754 -4.0467 0.1351 26 7 2.1582 -1.1475 -0.0065 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6469 2.1352 0.0004 31 1 4.1329 2.1206 0.0107 32 1 5.3110 -0.0650 0.0102 33 1 3.6078 -3.2458 -0.0063 34 1 5.9786 -1.9849 -0.8822 35 1 5.9706 -1.9904 0.8976 36 1 4.7605 -5.0227 -1.4160 37 1 5.9249 -3.8934 -2.1860 38 1 7.0654 -6.0033 -2.4349 39 1 6.4886 -6.5975 -0.8487 40 1 9.6847 -8.0660 -0.3855 41 1 8.3477 -7.6564 -1.4868 42 1 9.9301 -6.8632 -1.6745 43 1 11.2142 -8.1037 2.0917 44 1 8.0350 -3.1070 -0.1710 45 1 7.8447 -4.2752 1.1663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:53 Heat of formation + Delta-G solvation = 35.846884 kcal Electronic energy + Delta-G solvation = -22531.210440 eV Core-core repulsion = 19355.046241 eV Total energy + Delta-G solvation = -3176.164199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33299 -38.74743 -36.18865 -33.85932 -32.79462 -32.05675 -30.67574 -28.94346 -28.03750 -27.18016 -25.26406 -24.43404 -22.87075 -21.63999 -21.49764 -20.03385 -19.34809 -17.51448 -16.66135 -16.12664 -15.88857 -15.42984 -15.17150 -14.93299 -14.33869 -14.18413 -13.89391 -13.73620 -13.12803 -13.05199 -12.86151 -12.48698 -12.43584 -12.36961 -12.06573 -11.90120 -11.70977 -11.20220 -10.95510 -10.79818 -10.60642 -10.55195 -10.42987 -10.21185 -10.15225 -9.98890 -9.79907 -9.58542 -9.49843 -8.90988 -8.46300 -7.72342 -7.20484 -6.03167 -4.07167 1.19830 1.41021 3.08387 3.28128 3.36281 3.40567 3.82325 4.39555 4.40776 4.67370 4.79467 4.87378 4.92594 5.00336 5.14569 5.20224 5.27415 5.36998 5.39199 5.44710 5.49170 5.52796 5.64601 5.72245 5.84873 5.90702 6.00721 6.01458 6.12511 6.23172 6.34990 6.46732 6.53551 6.61700 6.65382 6.82971 6.99665 7.04123 7.05342 7.48923 7.54898 7.66907 7.83178 8.14579 8.15720 8.30612 8.55474 8.99866 9.58061 11.04061 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.002909 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.145464 B = 9623.878686 C =10330.304387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.174 3.826 3 C -0.243 4.243 4 C -0.031 4.031 5 C -0.247 4.247 6 C 0.411 3.589 7 N -0.720 5.720 8 C 0.140 3.860 9 C -0.124 4.124 10 H 0.077 0.923 11 C -0.122 4.122 12 C 0.044 3.956 13 N -0.524 5.524 14 C 0.207 3.793 15 H -0.002 1.002 16 C -0.130 4.130 17 C -0.502 4.502 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.066 3.934 26 N -0.550 5.550 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.007 0.993 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.064 0.936 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 13.872 -3.414 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.035 3.965 3 C -0.266 4.266 4 C -0.057 4.057 5 C -0.272 4.272 6 C 0.174 3.826 7 N -0.351 5.351 8 C 0.016 3.984 9 C -0.144 4.144 10 H 0.096 0.904 11 C -0.160 4.160 12 C -0.084 4.084 13 N -0.249 5.249 14 C 0.101 3.899 15 H 0.016 0.984 16 C -0.188 4.188 17 C -0.541 4.541 18 H 0.080 0.920 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.063 4.063 26 N -0.269 5.269 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.064 13.117 -3.700 21.066 hybrid contribution 0.719 0.386 1.083 1.356 sum -15.345 13.503 -2.617 20.607 Atomic orbital electron populations 1.20713 0.89203 1.03238 1.02927 1.20877 0.96242 0.87579 0.91807 1.21555 0.94815 0.98723 1.11498 1.21286 0.94230 0.97519 0.92661 1.21418 1.00977 0.91981 1.12818 1.18349 0.88055 0.86514 0.89640 1.44644 1.06158 1.04672 1.79655 1.21452 0.78152 0.97327 1.01483 1.22710 0.99174 0.94110 0.98414 0.90412 1.22771 0.98484 0.98323 0.96400 1.22941 0.90163 0.95549 0.99727 1.63703 1.18752 1.11687 1.30761 1.19454 0.92495 0.88011 0.89952 0.98398 1.21800 0.98050 1.00373 0.98621 1.21162 1.07655 0.95774 1.29512 0.91957 1.24943 0.98048 0.94860 0.96451 1.69916 1.37667 1.05576 1.40127 0.86477 0.82796 0.79540 0.78817 1.19712 1.21170 1.21040 1.22578 0.89319 0.96405 0.98022 1.66957 1.07760 1.30225 1.21919 0.90504 0.90653 0.90773 0.85529 0.85205 0.85062 0.76101 0.91539 0.91772 0.91931 0.91048 0.91373 0.94406 0.90059 0.97367 0.94616 0.93057 0.91749 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.17 36.01 0.37 -0.44 16 2 C 0.17 1.94 6.78 -82.61 -0.56 1.38 16 3 C -0.24 -2.40 9.73 -39.42 -0.38 -2.78 16 4 C -0.03 -0.31 10.17 -39.32 -0.40 -0.71 16 5 C -0.25 -2.87 9.33 -39.23 -0.37 -3.24 16 6 C 0.41 5.37 7.65 -155.01 -1.19 4.18 16 7 N -0.72 -8.82 5.64 -60.43 -0.34 -9.16 16 8 C 0.14 1.70 4.18 -4.05 -0.02 1.68 16 9 C -0.12 -1.76 2.96 -88.80 -0.26 -2.02 16 10 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 11 C -0.12 -1.71 6.44 -24.60 -0.16 -1.87 16 12 C 0.04 0.78 5.32 -2.30 -0.01 0.77 16 13 N -0.52 -10.98 5.02 -224.68 -1.13 -12.11 16 14 C 0.21 5.16 1.65 -68.87 -0.11 5.04 16 15 H 0.00 -0.04 8.10 -51.93 -0.42 -0.46 16 16 C -0.13 -3.18 8.87 37.16 0.33 -2.85 16 17 C -0.50 -13.58 7.69 -34.44 -0.26 -13.84 16 18 H 0.06 1.69 7.43 -52.49 -0.39 1.30 16 19 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 20 N -0.89 -25.35 11.38 55.43 0.63 -24.72 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.07 1.20 5.65 -2.83 -0.02 1.18 16 26 N -0.55 -7.35 10.31 -8.67 -0.09 -7.44 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.38 6.71 -52.49 -0.35 1.03 16 33 H 0.40 4.84 8.60 -40.82 -0.35 4.49 16 34 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 38 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 39 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 40 H 0.08 2.16 6.24 -51.93 -0.32 1.84 16 41 H 0.01 0.16 6.83 -51.93 -0.35 -0.19 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 45 H 0.07 1.37 7.05 -51.93 -0.37 1.01 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -29.65 356.44 -11.24 -40.89 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.52 Total: 3.05 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.14 Total: -12.03 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.93 Total: -53.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.65 -11.24 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.733 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds