Wall clock time and date at job start Tue Mar 31 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38064 * 119.57588 * 2 1 4 4 C 1.38837 * 119.32911 * 179.72755 * 3 2 1 5 5 C 1.38341 * 118.50781 * 0.27723 * 4 3 2 6 6 C 1.39094 * 119.09856 * 0.02562 * 5 4 3 7 7 N 1.39004 * 119.70605 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00231 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47386 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.62684 * 308.09907 * 9 8 7 11 11 C 1.55137 * 110.70819 * 71.40211 * 9 8 7 12 12 C 1.54900 * 101.65548 * 154.03697 * 11 9 8 13 13 N 1.47841 * 104.79827 * 322.92770 * 12 11 9 14 14 C 1.46897 * 111.00394 * 146.36135 * 13 12 11 15 15 H 1.08997 * 109.47505 * 299.11466 * 14 13 12 16 16 C 1.52999 * 109.46884 * 59.11128 * 14 13 12 17 17 C 1.50702 * 109.47171 * 179.10622 * 14 13 12 18 18 H 1.08000 * 120.00297 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99934 * 180.02562 * 17 14 13 20 20 N 1.31522 * 119.99811 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 119.99972 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47610 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47412 * 120.00222 * 21 19 17 24 24 H 1.48510 * 109.47088 * 240.00002 * 21 19 17 25 25 C 1.47450 * 108.56642 * 24.09453 * 13 12 11 26 26 N 1.31944 * 119.57353 * 180.32415 * 2 1 3 27 27 H 1.08991 * 109.47456 * 89.99939 * 1 2 3 28 28 H 1.09002 * 109.46672 * 210.00023 * 1 2 3 29 29 H 1.08999 * 109.46800 * 329.99428 * 1 2 3 30 30 H 1.08003 * 120.33098 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.74358 * 180.29880 * 4 3 2 32 32 H 1.07993 * 120.45190 * 180.02562 * 5 4 3 33 33 H 0.97007 * 119.99915 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46749 * 300.00009 * 8 7 6 35 35 H 1.09002 * 109.47281 * 59.99005 * 8 7 6 36 36 H 1.09002 * 110.98523 * 272.12637 * 11 9 8 37 37 H 1.08997 * 110.99308 * 35.93942 * 11 9 8 38 38 H 1.08999 * 110.37690 * 204.09741 * 12 11 9 39 39 H 1.09002 * 110.46862 * 81.80417 * 12 11 9 40 40 H 1.09000 * 109.47727 * 185.55266 * 16 14 13 41 41 H 1.09002 * 109.47191 * 305.55325 * 16 14 13 42 42 H 1.09000 * 109.47319 * 65.55048 * 16 14 13 43 43 H 0.96997 * 119.99914 * 180.02562 * 20 19 17 44 44 H 1.08992 * 109.88787 * 239.60941 * 25 13 12 45 45 H 1.09003 * 109.88961 * 118.41714 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2007 0.0000 4 6 3.5768 1.1948 0.0058 5 6 4.2319 -0.0237 0.0054 6 6 3.4817 -1.1950 -0.0011 7 7 4.1268 -2.4263 -0.0021 8 6 5.5905 -2.4863 0.0044 9 6 6.0411 -3.9484 0.0025 10 1 5.5490 -4.5029 0.8016 11 6 5.7666 -4.6052 -1.3759 12 6 6.8343 -5.7270 -1.4062 13 7 8.0216 -5.1359 -0.7530 14 6 8.7710 -6.1528 -0.0032 15 1 8.1339 -6.5739 0.7744 16 6 9.2153 -7.2645 -0.9560 17 6 9.9833 -5.5189 0.6290 18 1 10.1774 -4.4659 0.4884 19 6 10.8446 -6.2834 1.3872 20 7 10.6085 -7.5659 1.5581 21 14 12.3468 -5.4976 2.1715 22 1 12.3854 -4.0531 1.8294 23 1 12.2751 -5.6557 3.6463 24 1 13.5747 -6.1595 1.6618 25 6 7.5754 -4.0467 0.1351 26 7 2.1582 -1.1475 -0.0065 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6469 2.1352 0.0004 31 1 4.1329 2.1206 0.0107 32 1 5.3110 -0.0650 0.0102 33 1 3.6078 -3.2458 -0.0063 34 1 5.9786 -1.9849 -0.8822 35 1 5.9706 -1.9904 0.8976 36 1 4.7605 -5.0227 -1.4160 37 1 5.9249 -3.8934 -2.1860 38 1 7.0654 -6.0033 -2.4349 39 1 6.4886 -6.5975 -0.8487 40 1 9.6847 -8.0660 -0.3855 41 1 8.3477 -7.6564 -1.4868 42 1 9.9301 -6.8632 -1.6745 43 1 11.2142 -8.1037 2.0917 44 1 8.0350 -3.1070 -0.1710 45 1 7.8447 -4.2752 1.1663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:52 Heat of formation + Delta-G solvation = 17.915857 kcal Electronic energy + Delta-G solvation = -22531.987987 eV Core-core repulsion = 19355.046241 eV Total energy + Delta-G solvation = -3176.941747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17573 -40.15454 -37.31843 -35.54524 -33.61775 -33.47020 -31.95351 -30.27790 -29.60349 -27.95558 -27.19899 -25.71616 -23.71337 -23.22356 -22.44003 -21.24387 -21.07070 -18.48588 -18.13494 -17.53964 -17.15174 -16.75320 -16.24032 -16.13476 -15.77505 -15.20845 -15.04271 -14.82310 -14.70817 -14.09773 -13.97519 -13.76797 -13.70782 -13.56303 -13.12815 -13.00397 -12.94155 -12.77975 -12.61562 -12.55118 -12.32138 -12.12191 -11.81796 -11.76101 -11.68771 -11.55127 -11.05577 -10.92245 -10.55247 -10.43297 -10.33855 -8.92335 -8.58656 -8.12611 -6.23759 0.39216 0.60312 1.40140 1.42293 1.53982 2.16778 2.41663 2.99969 3.16096 3.41283 3.62128 3.67542 3.72768 3.93917 4.02207 4.22327 4.31267 4.43758 4.44916 4.48141 4.54684 4.70214 4.74605 4.77276 4.82395 4.83972 4.86819 4.89807 4.98790 5.00295 5.07145 5.15871 5.19472 5.22365 5.26525 5.36840 5.45744 5.47151 5.72485 5.74206 5.77531 6.12710 6.24013 6.40175 6.64342 6.69580 6.91358 7.30317 7.45628 8.93994 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.002909 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.145464 B = 9623.878686 C =10330.304387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 C -0.241 4.241 4 C -0.034 4.034 5 C -0.262 4.262 6 C 0.389 3.611 7 N -0.721 5.721 8 C 0.154 3.846 9 C -0.109 4.109 10 H 0.073 0.927 11 C -0.106 4.106 12 C 0.039 3.961 13 N -0.535 5.535 14 C 0.213 3.787 15 H -0.037 1.037 16 C -0.119 4.119 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.065 3.935 26 N -0.576 5.576 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.138 0.862 33 H 0.403 0.597 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.073 0.927 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 16.263 -3.957 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.016 3.984 3 C -0.264 4.264 4 C -0.059 4.059 5 C -0.287 4.287 6 C 0.154 3.846 7 N -0.354 5.354 8 C 0.030 3.970 9 C -0.129 4.129 10 H 0.092 0.908 11 C -0.144 4.144 12 C -0.088 4.088 13 N -0.260 5.260 14 C 0.106 3.894 15 H -0.020 1.020 16 C -0.177 4.177 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.785 3.215 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.064 4.064 26 N -0.296 5.296 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.091 15.530 -4.253 23.481 hybrid contribution 0.954 -0.313 1.240 1.595 sum -16.137 15.217 -3.013 22.384 Atomic orbital electron populations 1.20784 0.87198 1.04027 1.03753 1.21493 0.97789 0.87599 0.91553 1.21930 0.95013 0.99449 1.09968 1.21690 0.94686 0.98062 0.91470 1.21621 1.01428 0.92280 1.13332 1.18579 0.88408 0.86961 0.90683 1.44526 1.05846 1.04716 1.80269 1.21241 0.78409 0.95460 1.01935 1.22495 0.96065 0.95782 0.98559 0.90842 1.22698 0.98341 0.97065 0.96330 1.23029 0.90117 0.96412 0.99288 1.63626 1.20599 1.11204 1.30576 1.19216 0.91872 0.88867 0.89421 1.01988 1.21622 0.98522 0.99498 0.98069 1.21420 1.08491 0.95621 1.29854 0.92457 1.25734 1.00858 0.95340 0.97002 1.70043 1.38698 1.06737 1.40744 0.85480 0.79225 0.78897 0.77884 1.18985 1.20745 1.20691 1.22543 0.92356 0.95678 0.95839 1.66964 1.08110 1.31646 1.22879 0.89551 0.91415 0.88434 0.82694 0.82445 0.84434 0.76186 0.90854 0.91597 0.89674 0.89994 0.90755 0.95573 0.92571 0.95124 0.95214 0.92997 0.90882 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.17 71.24 0.72 -0.64 16 2 C 0.15 3.17 6.78 42.50 0.29 3.45 16 3 C -0.24 -4.11 9.73 22.37 0.22 -3.90 16 4 C -0.03 -0.59 10.17 22.44 0.23 -0.36 16 5 C -0.26 -5.67 9.33 22.50 0.21 -5.46 16 6 C 0.39 9.76 7.65 133.04 1.02 10.78 16 7 N -0.72 -16.91 5.64 -345.10 -1.95 -18.86 16 8 C 0.15 3.54 4.18 86.38 0.36 3.90 16 9 C -0.11 -3.01 2.96 -9.61 -0.03 -3.04 16 10 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 11 C -0.11 -2.81 6.44 31.98 0.21 -2.60 16 12 C 0.04 1.36 5.32 86.77 0.46 1.83 16 13 N -0.54 -22.58 5.02 -864.76 -4.34 -26.92 16 14 C 0.21 10.94 1.65 44.17 0.07 11.01 16 15 H -0.04 -2.14 8.10 -2.39 -0.02 -2.16 16 16 C -0.12 -5.93 8.87 71.98 0.64 -5.29 16 17 C -0.52 -28.44 7.69 25.60 0.20 -28.25 16 18 H 0.06 3.15 7.43 -2.91 -0.02 3.13 16 19 C 0.01 0.50 5.30 84.65 0.45 0.95 16 20 N -0.92 -53.55 11.38 21.45 0.24 -53.30 16 21 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.06 2.36 5.65 86.65 0.49 2.85 16 26 N -0.58 -14.86 10.31 -181.33 -1.87 -16.73 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.14 2.68 6.71 -2.91 -0.02 2.66 16 33 H 0.40 9.29 8.60 -92.70 -0.80 8.50 16 34 H 0.07 1.61 7.78 -2.39 -0.02 1.59 16 35 H 0.07 1.50 7.93 -2.39 -0.02 1.48 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.04 7.94 -2.39 -0.02 2.02 16 38 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 39 H 0.03 0.96 7.60 -2.39 -0.02 0.95 16 40 H 0.06 3.07 6.24 -2.39 -0.01 3.06 16 41 H 0.03 1.33 6.83 -2.39 -0.02 1.31 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.07 2.52 7.82 -2.39 -0.02 2.50 16 45 H 0.04 1.59 7.05 -2.39 -0.02 1.57 16 Total: -1.00 -65.10 356.44 -0.19 -65.29 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.17 Total: 19.46 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 5.53 Total: -14.76 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -7.91 Total: -115.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.10 -0.19 -65.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.204 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds