Wall clock time and date at job start Tue Mar 31 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47635 * 59.67413 * 3 2 1 5 5 C 1.33298 * 120.00264 * 273.80637 * 4 3 2 6 6 H 1.07995 * 119.99873 * 190.67312 * 5 4 3 7 7 C 1.46787 * 119.99777 * 10.66791 * 5 4 3 8 8 N 1.29315 * 119.99981 * 15.85868 * 7 5 4 9 9 Si 1.86804 * 119.99974 * 195.85237 * 7 5 4 10 10 H 1.48496 * 109.47139 * 60.00229 * 9 7 5 11 11 H 1.48503 * 109.46846 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46980 * 300.00136 * 9 7 5 13 13 C 1.34785 * 119.99773 * 93.80001 * 4 3 2 14 14 O 1.21524 * 119.99761 * 185.13206 * 13 4 3 15 15 C 1.47245 * 119.99928 * 5.13846 * 13 4 3 16 16 C 1.39844 * 120.22099 * 304.69060 * 15 13 4 17 17 C 1.37688 * 119.92333 * 180.02562 * 16 15 13 18 18 C 1.38662 * 120.36719 * 0.02562 * 17 16 15 19 19 C 1.37946 * 120.44336 * 0.26439 * 18 17 16 20 20 N 1.48016 * 119.96267 * 179.72285 * 19 18 17 21 21 O 1.31708 * 120.00301 * 3.71499 * 20 19 18 22 22 O 1.31701 * 120.00181 * 183.72046 * 20 19 18 23 23 C 1.38958 * 120.06865 * 359.43970 * 19 18 17 24 24 N 1.38804 * 120.18017 * 180.25582 * 23 19 18 25 25 H 1.08998 * 109.47120 * 299.67077 * 3 2 1 26 26 H 1.09000 * 109.46587 * 179.67965 * 3 2 1 27 27 H 0.97006 * 119.99931 * 179.97438 * 8 7 5 28 28 H 1.08007 * 120.03576 * 0.04786 * 16 15 13 29 29 H 1.08002 * 119.82085 * 180.02562 * 17 16 15 30 30 H 1.08005 * 119.78088 * 179.97438 * 18 17 16 31 31 H 0.97002 * 120.00459 * 332.61502 * 24 23 19 32 32 H 0.97007 * 119.99941 * 152.61166 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.6965 -1.1921 5 6 3.2473 -2.0208 -1.1750 6 1 3.7654 -2.5158 -1.9830 7 6 2.7091 -2.8063 -0.0579 8 7 1.8386 -2.2812 0.7414 9 14 3.2813 -4.5643 0.2090 10 1 4.7489 -4.5783 0.4350 11 1 2.5920 -5.1347 1.3943 12 1 2.9574 -5.3778 -0.9904 13 6 3.3940 0.0013 -2.3063 14 8 3.7098 -0.5839 -3.3235 15 6 3.3363 1.4725 -2.2910 16 6 2.1642 2.1269 -1.8992 17 6 2.1168 3.5029 -1.8877 18 6 3.2259 4.2457 -2.2633 19 6 4.3879 3.6158 -2.6581 20 7 5.5634 4.4191 -3.0628 21 8 5.5247 5.7328 -2.9762 22 8 6.6480 3.8204 -3.5095 23 6 4.4579 2.2281 -2.6707 24 7 5.6277 1.5919 -3.0625 25 1 2.9716 -0.5079 0.8929 26 1 2.9708 1.0285 -0.0057 27 1 1.4827 -2.8004 1.4795 28 1 1.2972 1.5536 -1.6057 29 1 1.2109 4.0066 -1.5844 30 1 3.1781 5.3246 -2.2511 31 1 6.2345 2.0296 -3.6799 32 1 5.8385 0.7096 -2.7189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122814449.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:17 Heat of formation + Delta-G solvation = 58.122015 kcal Electronic energy + Delta-G solvation = -22796.193928 eV Core-core repulsion = 19148.070457 eV Total energy + Delta-G solvation = -3648.123471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90765 -40.43522 -38.95930 -37.74335 -36.36645 -36.12961 -35.10448 -34.18945 -32.84533 -30.55572 -29.28636 -27.46872 -26.94163 -24.42839 -23.36208 -21.48096 -20.04509 -19.58754 -19.17569 -18.45096 -18.19383 -17.98370 -17.73270 -17.08978 -16.72461 -16.16210 -15.82426 -15.67372 -15.17914 -14.88316 -14.70646 -14.27879 -13.91835 -13.46227 -13.36656 -13.23156 -13.02416 -12.93430 -12.44986 -12.36993 -12.29431 -12.17764 -12.12664 -11.90332 -11.71408 -11.22540 -10.73648 -10.42173 -10.31346 -9.10156 -8.62932 -5.83603 -1.72442 -0.14877 0.09762 0.14806 1.33225 1.46159 1.52270 1.72839 1.95494 2.18977 2.27084 2.31630 2.50395 2.81300 2.91791 3.36391 3.48615 3.62213 3.80275 3.88032 3.92847 4.28740 4.44675 4.55088 4.70509 4.83728 4.96087 5.09627 5.18082 5.39791 5.63661 5.83394 6.04200 6.30569 6.52531 6.96315 7.00835 7.23218 7.91405 8.35952 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.005179 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.137917 B = 5405.086265 C = 6242.252257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.263 3.737 3 C 0.212 3.788 4 N -0.406 5.406 5 C -0.387 4.387 6 H 0.091 0.909 7 C 0.023 3.977 8 N -0.851 5.851 9 Si 0.993 3.007 10 H -0.259 1.259 11 H -0.272 1.272 12 H -0.280 1.280 13 C 0.458 3.542 14 O -0.615 6.615 15 C -0.187 4.187 16 C 0.000 4.000 17 C -0.146 4.146 18 C 0.008 3.992 19 C -0.089 4.089 20 N 0.017 4.983 21 O -0.198 6.198 22 O -0.248 6.248 23 C 0.313 3.687 24 N -0.822 5.822 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.291 0.709 28 H 0.132 0.868 29 H 0.190 0.810 30 H 0.185 0.815 31 H 0.419 0.581 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 9.447 2.358 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.054 4.054 3 C 0.085 3.915 4 N -0.120 5.120 5 C -0.515 4.515 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.485 5.485 9 Si 0.816 3.184 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.206 1.206 13 C 0.250 3.750 14 O -0.503 6.503 15 C -0.195 4.195 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.011 4.011 19 C -0.185 4.185 20 N 0.476 4.524 21 O -0.386 6.386 22 O -0.419 6.419 23 C 0.195 3.805 24 N -0.369 5.369 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.103 0.897 28 H 0.150 0.850 29 H 0.207 0.793 30 H 0.202 0.798 31 H 0.260 0.740 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.025 8.763 2.167 9.027 hybrid contribution 1.186 -1.349 -0.223 1.810 sum 1.211 7.414 1.945 7.759 Atomic orbital electron populations 1.80947 1.14063 1.13163 1.09558 1.29243 0.95340 0.89243 0.91618 1.19193 0.81164 0.99159 0.91959 1.42560 1.53234 1.06812 1.09409 1.20466 1.39261 0.82589 1.09182 0.89106 1.27438 0.93416 1.03461 0.94489 1.68756 1.23117 1.40670 1.15934 0.84984 0.79392 0.76291 0.77698 1.18392 1.19662 1.20602 1.17746 0.87797 0.86228 0.83276 1.90611 1.56239 1.71221 1.32226 1.19582 0.93967 0.93339 1.12644 1.21848 0.95229 0.96191 0.88767 1.21249 0.99878 0.91584 1.03923 1.21362 0.87909 1.03307 0.88568 1.20148 0.88195 0.88001 1.22151 1.50357 1.02824 1.03037 0.96184 1.96224 1.91075 0.89731 1.61580 1.96018 1.20674 1.72081 1.53081 1.17419 0.87142 0.88097 0.87843 1.43328 1.21012 1.22787 1.49803 0.85253 0.85933 0.89684 0.85047 0.79290 0.79815 0.74033 0.75893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.64 18.53 20.01 0.37 -20.27 16 2 C 0.26 10.11 10.67 89.44 0.95 11.06 16 3 C 0.21 7.42 4.76 84.57 0.40 7.82 16 4 N -0.41 -17.29 2.50 -644.49 -1.61 -18.90 16 5 C -0.39 -18.50 9.64 86.71 0.84 -17.67 16 6 H 0.09 4.76 7.32 -2.91 -0.02 4.74 16 7 C 0.02 1.02 5.26 87.30 0.46 1.48 16 8 N -0.85 -37.07 8.60 23.26 0.20 -36.87 16 9 Si 0.99 36.22 29.67 68.60 2.04 38.25 16 10 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 11 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 12 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 13 C 0.46 19.32 6.26 86.61 0.54 19.86 16 14 O -0.61 -30.90 16.08 -3.79 -0.06 -30.96 16 15 C -0.19 -6.08 4.69 -19.98 -0.09 -6.17 16 16 C 0.00 0.01 7.72 22.53 0.17 0.19 16 17 C -0.15 -2.61 10.02 22.24 0.22 -2.39 16 18 C 0.01 0.16 9.56 22.30 0.21 0.37 16 19 C -0.09 -2.39 6.89 36.48 0.25 -2.14 16 20 N 0.02 0.51 4.98 -46.22 -0.23 0.28 16 21 O -0.20 -6.01 19.14 3.50 0.07 -5.94 16 22 O -0.25 -8.15 16.45 3.51 0.06 -8.09 16 23 C 0.31 9.55 6.75 38.75 0.26 9.81 16 24 N -0.82 -25.19 8.07 -50.91 -0.41 -25.60 16 25 H 0.13 4.62 6.41 -2.39 -0.02 4.61 16 26 H 0.12 3.31 5.82 -2.39 -0.01 3.29 16 27 H 0.29 12.05 8.26 -92.70 -0.77 11.28 16 28 H 0.13 3.78 5.40 -2.91 -0.02 3.76 16 29 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.18 2.52 7.56 -2.91 -0.02 2.50 16 31 H 0.42 12.30 5.80 -92.71 -0.54 11.76 16 32 H 0.41 12.92 7.87 -92.70 -0.73 12.19 16 Total: -1.00 -61.73 290.09 4.62 -57.11 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.02 Total: 28.75 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 4.22 Total: 22.23 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -1.68 Total: -101.35 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: 0.06 Total: -44.99 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.04 Total: 38.25 kcal Total: -61.73 4.62 -57.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122814449.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.232 kcal (2) G-P(sol) polarization free energy of solvation -61.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds