Wall clock time and date at job start Tue Mar 31 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00166 * 2 1 4 4 C 1.38756 * 120.05837 * 0.02793 * 3 2 1 5 5 C 1.38119 * 119.94662 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05574 * 359.74198 * 5 4 3 7 7 C 1.38245 * 120.10923 * 0.50862 * 6 5 4 8 8 C 1.50701 * 119.96843 * 179.76529 * 7 6 5 9 9 C 1.53113 * 109.52276 * 59.72951 * 8 7 6 10 10 C 1.53043 * 109.27827 * 182.43809 * 9 8 7 11 11 N 1.46841 * 109.52130 * 59.17980 * 10 9 8 12 12 C 1.46901 * 110.99707 * 174.16181 * 11 10 9 13 13 H 1.08997 * 109.47265 * 54.99925 * 12 11 10 14 14 C 1.52997 * 109.47093 * 294.99288 * 12 11 10 15 15 C 1.50708 * 109.47053 * 174.99731 * 12 11 10 16 16 H 1.07996 * 120.00130 * 31.06466 * 15 12 11 17 17 C 1.37880 * 119.99821 * 211.06277 * 15 12 11 18 18 N 1.31514 * 120.00119 * 352.67593 * 17 15 12 19 19 Si 1.86799 * 119.99860 * 172.67023 * 17 15 12 20 20 H 1.48499 * 109.47222 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46788 * 120.00233 * 19 17 15 22 22 H 1.48499 * 109.47061 * 240.00164 * 19 17 15 23 23 C 1.46849 * 111.19592 * 298.25395 * 11 10 9 24 24 C 1.53038 * 109.52312 * 61.74803 * 23 11 10 25 25 C 1.38170 * 120.05675 * 359.49334 * 7 6 5 26 26 H 1.09006 * 109.46981 * 59.99891 * 1 2 3 27 27 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46860 * 300.00027 * 1 2 3 29 29 H 1.07999 * 120.02263 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.96960 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.94434 * 180.27793 * 6 5 4 32 32 H 1.09007 * 109.51890 * 179.85525 * 8 7 6 33 33 H 1.09001 * 109.50997 * 62.49578 * 9 8 7 34 34 H 1.09002 * 109.53311 * 302.39553 * 9 8 7 35 35 H 1.08991 * 109.45981 * 299.15895 * 10 9 8 36 36 H 1.09004 * 109.45756 * 179.19018 * 10 9 8 37 37 H 1.09000 * 109.47137 * 186.68091 * 14 12 11 38 38 H 1.08992 * 109.47414 * 306.68861 * 14 12 11 39 39 H 1.09003 * 109.46884 * 66.68567 * 14 12 11 40 40 H 0.97005 * 119.99843 * 354.52460 * 18 17 15 41 41 H 1.09003 * 109.46186 * 181.76259 * 23 11 10 42 42 H 1.08996 * 109.46403 * 301.72746 * 23 11 10 43 43 H 1.09000 * 109.50232 * 180.87648 * 24 23 11 44 44 H 1.09002 * 109.53569 * 60.78037 * 24 23 11 45 45 H 1.07999 * 120.02660 * 180.22799 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0065 7 6 4.0561 2.5170 0.0007 8 6 5.5609 2.5981 0.0012 9 6 6.0326 3.3457 1.2513 10 6 7.5569 3.4781 1.2158 11 7 7.9580 4.2082 0.0066 12 6 9.4025 4.4751 0.0077 13 1 9.9451 3.5379 0.1320 14 6 9.7457 5.4200 1.1610 15 6 9.7963 5.1139 -1.2993 16 1 9.0951 5.7451 -1.8247 17 6 11.0520 4.8926 -1.8241 18 7 11.9543 4.2451 -1.1197 19 14 11.4715 5.5122 -3.5356 20 1 10.2921 6.2046 -4.1143 21 1 12.6108 6.4611 -3.4531 22 1 11.8452 4.3640 -4.3999 23 6 7.5573 3.4855 -1.2074 24 6 6.0331 3.3533 -1.2443 25 6 3.4312 1.2847 0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2129 2.3204 0.0006 30 1 1.3341 4.5114 0.0020 31 1 3.7924 4.6380 0.0114 32 1 5.9799 1.5918 -0.0013 33 1 5.7362 2.7903 2.1412 34 1 5.5816 4.3378 1.2746 35 1 8.0074 2.4857 1.2073 36 1 7.8947 4.0227 2.0976 37 1 10.7935 5.7122 1.0918 38 1 9.1162 6.3079 1.1028 39 1 9.5718 4.9130 2.1101 40 1 11.7643 3.9930 -0.2024 41 1 7.8955 4.0353 -2.0857 42 1 8.0080 2.4930 -1.2046 43 1 5.7370 2.8033 -2.1375 44 1 5.5815 4.3453 -1.2614 45 1 4.0207 0.3798 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194875502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:47 Heat of formation + Delta-G solvation = -25.672918 kcal Electronic energy + Delta-G solvation = -23104.002527 eV Core-core repulsion = 19892.877878 eV Total energy + Delta-G solvation = -3211.124649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35178 -38.83857 -37.31211 -34.68830 -32.43912 -30.91524 -30.39124 -29.87083 -28.02948 -27.46407 -24.93706 -23.85426 -22.66932 -22.20631 -21.22515 -20.07388 -19.09930 -17.78476 -16.71004 -16.33791 -15.96206 -15.92201 -15.30621 -14.62513 -14.14015 -13.83063 -13.72074 -13.61461 -13.52946 -13.36590 -12.80843 -12.64284 -12.53998 -12.24636 -11.75361 -11.64744 -11.36521 -11.21548 -11.15207 -11.01216 -10.73882 -10.70989 -10.62093 -10.42563 -10.12547 -10.08000 -9.98433 -9.57998 -8.79194 -8.57024 -8.27290 -8.23509 -7.20047 -6.35122 -4.05774 1.28148 1.41132 3.09092 3.44697 3.47185 3.61502 3.71734 4.51798 4.63967 4.70991 4.85407 4.87022 4.90819 5.00768 5.12592 5.18496 5.31983 5.34026 5.37930 5.41179 5.50852 5.74081 5.79538 5.93749 5.96739 6.11034 6.13569 6.22433 6.24112 6.31901 6.35155 6.42463 6.50655 6.55727 6.67499 6.69845 6.76534 6.80796 6.87303 6.98995 7.16605 7.27827 7.49374 7.93653 8.10802 8.45581 8.62815 8.89146 9.66101 11.01820 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.003244 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.939635 B = 8630.317684 C = 8939.189325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.025 4.025 8 C -0.051 4.051 9 C -0.102 4.102 10 C 0.051 3.949 11 N -0.530 5.530 12 C 0.192 3.808 13 H 0.004 0.996 14 C -0.128 4.128 15 C -0.583 4.583 16 H 0.057 0.943 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 1.069 2.931 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.069 3.931 24 C -0.106 4.106 25 C -0.152 4.152 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.016 0.984 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 -5.222 3.178 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.079 3.921 4 C -0.237 4.237 5 C -0.099 4.099 6 C -0.165 4.165 7 C -0.025 4.025 8 C -0.070 4.070 9 C -0.139 4.139 10 C -0.078 4.078 11 N -0.256 5.256 12 C 0.086 3.914 13 H 0.021 0.979 14 C -0.186 4.186 15 C -0.621 4.621 16 H 0.076 0.924 17 C -0.185 4.185 18 N -0.550 5.550 19 Si 0.898 3.102 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.059 4.059 24 C -0.144 4.144 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.293 -4.962 2.028 20.989 hybrid contribution -1.089 -0.698 1.259 1.805 sum -21.383 -5.660 3.286 22.362 Atomic orbital electron populations 1.23016 0.78680 1.03698 1.01240 1.86064 1.21154 1.27218 1.88937 1.18991 0.92267 0.83994 0.96873 1.21147 0.99653 0.92509 1.10425 1.20915 0.94649 0.96798 0.97495 1.21009 0.93403 0.98612 1.03516 1.19811 0.95880 0.91903 0.94909 1.20311 0.89272 1.00292 0.97096 1.21618 0.96237 1.00270 0.95824 1.22062 0.94107 0.96147 0.95435 1.62049 1.19006 1.44593 0.99935 1.19435 0.82377 0.94083 0.95495 0.97879 1.21883 1.00526 0.99930 0.96266 1.21895 1.01187 1.32649 1.06416 0.92446 1.25808 0.92772 0.95041 1.04897 1.70727 1.35966 1.37144 1.11141 0.83548 0.75463 0.76278 0.74900 1.21362 1.21528 1.21356 1.21875 0.92200 0.96177 0.95612 1.21714 0.97141 0.99994 0.95514 1.20353 0.91143 0.98316 1.07218 0.92765 0.88429 0.92789 0.85918 0.85969 0.85506 0.90898 0.92456 0.91155 0.96317 0.91259 0.93329 0.93593 0.96537 0.91901 0.88921 0.96532 0.92326 0.91266 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.68 10.50 -19.41 -0.20 -3.88 16 3 C 0.12 1.53 6.69 -39.22 -0.26 1.26 16 4 C -0.22 -2.37 9.04 -39.43 -0.36 -2.73 16 5 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 6 C -0.15 -1.84 8.66 -39.56 -0.34 -2.19 16 7 C -0.02 -0.33 4.79 -104.64 -0.50 -0.84 16 8 C -0.05 -0.75 2.43 -91.65 -0.22 -0.97 16 9 C -0.10 -1.53 5.22 -26.65 -0.14 -1.67 16 10 C 0.05 0.93 5.29 -3.83 -0.02 0.91 16 11 N -0.53 -11.35 4.52 -228.08 -1.03 -12.38 16 12 C 0.19 4.78 1.73 -68.86 -0.12 4.66 16 13 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 14 C -0.13 -2.95 8.83 37.16 0.33 -2.62 16 15 C -0.58 -15.89 6.76 -34.44 -0.23 -16.12 16 16 H 0.06 1.60 7.48 -52.49 -0.39 1.21 16 17 C 0.02 0.54 5.45 -17.82 -0.10 0.44 16 18 N -0.91 -27.20 13.55 55.43 0.75 -26.45 16 19 Si 1.07 24.98 29.91 -169.99 -5.08 19.90 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 1.41 5.16 -3.83 -0.02 1.39 16 24 C -0.11 -1.71 5.23 -26.65 -0.14 -1.85 16 25 C -0.15 -2.00 9.61 -39.43 -0.38 -2.38 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 30 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.13 1.55 7.05 -52.49 -0.37 1.18 16 32 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.06 7.30 -51.93 -0.38 0.68 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 1.25 6.32 -51.93 -0.33 0.92 16 37 H 0.05 1.18 8.00 -51.93 -0.42 0.77 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.33 6.73 -51.93 -0.35 -0.02 16 40 H 0.27 8.03 6.67 -40.82 -0.27 7.76 16 41 H 0.09 2.07 6.40 -51.93 -0.33 1.74 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.12 7.31 -51.93 -0.38 0.74 16 45 H 0.13 1.60 7.95 -52.49 -0.42 1.19 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -30.18 349.00 -9.50 -39.69 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.28 Total: 0.64 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -1.91 Total: -22.78 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.28 Total: -38.83 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.20 Total: -3.88 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.18 -9.50 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194875502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.013 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds