Wall clock time and date at job start Tue Mar 31 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00166 * 2 1 4 4 C 1.38756 * 120.05837 * 0.02793 * 3 2 1 5 5 C 1.38119 * 119.94662 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05574 * 359.74198 * 5 4 3 7 7 C 1.38245 * 120.10923 * 0.50862 * 6 5 4 8 8 C 1.50701 * 119.96843 * 179.76529 * 7 6 5 9 9 C 1.53113 * 109.52276 * 59.72951 * 8 7 6 10 10 C 1.53043 * 109.27827 * 182.43809 * 9 8 7 11 11 N 1.46841 * 109.52130 * 59.17980 * 10 9 8 12 12 C 1.46901 * 110.99707 * 174.16181 * 11 10 9 13 13 H 1.08997 * 109.47265 * 54.99925 * 12 11 10 14 14 C 1.52997 * 109.47093 * 294.99288 * 12 11 10 15 15 C 1.50708 * 109.47053 * 174.99731 * 12 11 10 16 16 H 1.07996 * 120.00130 * 31.06466 * 15 12 11 17 17 C 1.37880 * 119.99821 * 211.06277 * 15 12 11 18 18 N 1.31514 * 120.00119 * 352.67593 * 17 15 12 19 19 Si 1.86799 * 119.99860 * 172.67023 * 17 15 12 20 20 H 1.48499 * 109.47222 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46788 * 120.00233 * 19 17 15 22 22 H 1.48499 * 109.47061 * 240.00164 * 19 17 15 23 23 C 1.46849 * 111.19592 * 298.25395 * 11 10 9 24 24 C 1.53038 * 109.52312 * 61.74803 * 23 11 10 25 25 C 1.38170 * 120.05675 * 359.49334 * 7 6 5 26 26 H 1.09006 * 109.46981 * 59.99891 * 1 2 3 27 27 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46860 * 300.00027 * 1 2 3 29 29 H 1.07999 * 120.02263 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.96960 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.94434 * 180.27793 * 6 5 4 32 32 H 1.09007 * 109.51890 * 179.85525 * 8 7 6 33 33 H 1.09001 * 109.50997 * 62.49578 * 9 8 7 34 34 H 1.09002 * 109.53311 * 302.39553 * 9 8 7 35 35 H 1.08991 * 109.45981 * 299.15895 * 10 9 8 36 36 H 1.09004 * 109.45756 * 179.19018 * 10 9 8 37 37 H 1.09000 * 109.47137 * 186.68091 * 14 12 11 38 38 H 1.08992 * 109.47414 * 306.68861 * 14 12 11 39 39 H 1.09003 * 109.46884 * 66.68567 * 14 12 11 40 40 H 0.97005 * 119.99843 * 354.52460 * 18 17 15 41 41 H 1.09003 * 109.46186 * 181.76259 * 23 11 10 42 42 H 1.08996 * 109.46403 * 301.72746 * 23 11 10 43 43 H 1.09000 * 109.50232 * 180.87648 * 24 23 11 44 44 H 1.09002 * 109.53569 * 60.78037 * 24 23 11 45 45 H 1.07999 * 120.02660 * 180.22799 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0065 7 6 4.0561 2.5170 0.0007 8 6 5.5609 2.5981 0.0012 9 6 6.0326 3.3457 1.2513 10 6 7.5569 3.4781 1.2158 11 7 7.9580 4.2082 0.0066 12 6 9.4025 4.4751 0.0077 13 1 9.9451 3.5379 0.1320 14 6 9.7457 5.4200 1.1610 15 6 9.7963 5.1139 -1.2993 16 1 9.0951 5.7451 -1.8247 17 6 11.0520 4.8926 -1.8241 18 7 11.9543 4.2451 -1.1197 19 14 11.4715 5.5122 -3.5356 20 1 10.2921 6.2046 -4.1143 21 1 12.6108 6.4611 -3.4531 22 1 11.8452 4.3640 -4.3999 23 6 7.5573 3.4855 -1.2074 24 6 6.0331 3.3533 -1.2443 25 6 3.4312 1.2847 0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2129 2.3204 0.0006 30 1 1.3341 4.5114 0.0020 31 1 3.7924 4.6380 0.0114 32 1 5.9799 1.5918 -0.0013 33 1 5.7362 2.7903 2.1412 34 1 5.5816 4.3378 1.2746 35 1 8.0074 2.4857 1.2073 36 1 7.8947 4.0227 2.0976 37 1 10.7935 5.7122 1.0918 38 1 9.1162 6.3079 1.1028 39 1 9.5718 4.9130 2.1101 40 1 11.7643 3.9930 -0.2024 41 1 7.8955 4.0353 -2.0857 42 1 8.0080 2.4930 -1.2046 43 1 5.7370 2.8033 -2.1375 44 1 5.5815 4.3453 -1.2614 45 1 4.0207 0.3798 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194875502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:46 Heat of formation + Delta-G solvation = -42.673139 kcal Electronic energy + Delta-G solvation = -23104.739712 eV Core-core repulsion = 19892.877878 eV Total energy + Delta-G solvation = -3211.861834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27368 -40.12922 -38.46116 -36.29460 -34.16379 -32.08327 -31.77160 -31.17301 -29.45084 -28.12472 -26.96432 -25.25391 -23.74278 -23.55987 -22.55760 -21.68594 -20.44477 -18.76775 -18.68672 -17.23127 -17.05203 -16.73720 -16.62392 -15.89302 -15.64678 -15.61843 -15.28818 -14.79700 -14.69659 -14.53062 -14.18500 -14.01708 -13.52844 -13.35782 -13.22451 -13.02171 -12.93785 -12.75965 -12.55022 -12.45825 -12.15834 -12.10008 -11.99213 -11.93121 -11.91352 -11.50832 -11.40224 -11.05949 -10.66727 -10.35872 -9.73994 -9.12103 -9.02295 -8.58848 -6.29647 0.37497 0.51321 1.53488 1.61340 1.78423 2.37509 2.56837 2.80616 3.11202 3.33267 3.68105 3.81361 3.94850 4.01482 4.15701 4.27855 4.33407 4.35130 4.40278 4.44361 4.48275 4.53000 4.56869 4.60384 4.70316 4.73505 4.79168 4.79247 4.87023 4.93256 5.01992 5.03734 5.11501 5.13234 5.20344 5.30677 5.35349 5.37807 5.53560 5.57367 5.75224 5.85537 5.97487 6.06747 6.48247 6.50012 6.53312 6.78929 7.49800 8.77898 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.003244 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.939635 B = 8630.317684 C = 8939.189325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.115 3.885 4 C -0.214 4.214 5 C -0.078 4.078 6 C -0.157 4.157 7 C -0.033 4.033 8 C -0.044 4.044 9 C -0.091 4.091 10 C 0.050 3.950 11 N -0.531 5.531 12 C 0.192 3.808 13 H -0.033 1.033 14 C -0.116 4.116 15 C -0.584 4.584 16 H 0.050 0.950 17 C -0.031 4.031 18 N -0.941 5.941 19 Si 1.114 2.886 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.071 3.929 24 C -0.093 4.093 25 C -0.169 4.169 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.257 0.743 41 H 0.066 0.934 42 H -0.002 1.002 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.392 -4.744 3.140 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.070 3.930 4 C -0.233 4.233 5 C -0.096 4.096 6 C -0.175 4.175 7 C -0.033 4.033 8 C -0.063 4.063 9 C -0.129 4.129 10 C -0.078 4.078 11 N -0.256 5.256 12 C 0.085 3.915 13 H -0.015 1.015 14 C -0.174 4.174 15 C -0.622 4.622 16 H 0.068 0.932 17 C -0.229 4.229 18 N -0.578 5.578 19 Si 0.937 3.063 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.057 4.057 24 C -0.131 4.131 25 C -0.188 4.188 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.084 0.916 29 H 0.168 0.832 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.026 0.974 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.016 0.984 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.390 -4.488 2.004 23.900 hybrid contribution -0.262 -0.912 1.315 1.622 sum -23.652 -5.400 3.319 24.487 Atomic orbital electron populations 1.23331 0.76443 1.05453 1.02301 1.86042 1.23525 1.27038 1.88808 1.19125 0.92172 0.84947 0.96737 1.21474 1.01048 0.91821 1.08926 1.21236 0.94196 0.97995 0.96146 1.21115 0.94290 0.98192 1.03940 1.19581 0.94654 0.92542 0.96549 1.20161 0.90692 0.99508 0.95897 1.21545 0.93323 1.01033 0.96986 1.22165 0.96584 0.95121 0.93966 1.62032 1.16394 1.45654 1.01558 1.19327 0.84232 0.92632 0.95342 1.01501 1.21701 0.99201 0.99796 0.96731 1.22114 1.00827 1.32049 1.07245 0.93211 1.27168 0.92993 0.94758 1.07997 1.70847 1.36821 1.39307 1.10873 0.82969 0.76083 0.76209 0.71038 1.19467 1.20793 1.20803 1.21843 0.95183 0.94422 0.94234 1.21584 0.93600 1.00785 0.97116 1.20415 0.92046 0.98142 1.08186 0.91690 0.86553 0.91595 0.83219 0.83267 0.85371 0.91482 0.90454 0.90579 0.97414 0.90878 0.95387 0.93003 0.94156 0.93287 0.91517 0.98398 0.91196 0.90809 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.16 10.50 -92.38 -0.97 -8.13 16 3 C 0.12 2.62 6.69 22.51 0.15 2.77 16 4 C -0.21 -3.95 9.04 22.37 0.20 -3.75 16 5 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 6 C -0.16 -3.56 8.66 22.28 0.19 -3.36 16 7 C -0.03 -0.84 4.79 -19.88 -0.10 -0.93 16 8 C -0.04 -1.25 2.43 -11.46 -0.03 -1.28 16 9 C -0.09 -2.62 5.22 30.65 0.16 -2.46 16 10 C 0.05 1.81 5.29 86.33 0.46 2.27 16 11 N -0.53 -23.02 4.52 -875.51 -3.95 -26.97 16 12 C 0.19 9.83 1.73 44.17 0.08 9.90 16 13 H -0.03 -1.89 6.86 -2.39 -0.02 -1.91 16 14 C -0.12 -5.41 8.83 71.98 0.64 -4.77 16 15 C -0.58 -32.59 6.76 25.60 0.17 -32.42 16 16 H 0.05 2.81 7.48 -2.91 -0.02 2.79 16 17 C -0.03 -1.78 5.45 84.66 0.46 -1.32 16 18 N -0.94 -57.74 13.55 21.45 0.29 -57.45 16 19 Si 1.11 50.69 29.91 68.60 2.05 52.75 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.07 2.96 5.16 86.33 0.45 3.41 16 24 C -0.09 -2.96 5.23 30.65 0.16 -2.80 16 25 C -0.17 -4.28 9.61 22.37 0.21 -4.06 16 26 H 0.06 0.60 7.66 -2.38 -0.02 0.58 16 27 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.15 1.88 6.30 -2.91 -0.02 1.86 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.13 2.82 7.05 -2.91 -0.02 2.80 16 32 H 0.07 1.97 7.88 -2.38 -0.02 1.95 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.13 7.30 -2.39 -0.02 2.11 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.07 2.58 6.32 -2.39 -0.02 2.56 16 37 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16 38 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.64 6.73 -2.39 -0.02 1.63 16 40 H 0.26 16.00 6.67 -92.70 -0.62 15.39 16 41 H 0.07 3.08 6.40 -2.39 -0.02 3.06 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 2.29 7.31 -2.39 -0.02 2.28 16 45 H 0.12 3.08 7.95 -2.91 -0.02 3.06 16 Total: -1.00 -66.59 349.00 3.07 -63.52 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.11 Total: 15.00 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.54 Total: -38.71 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.66 Total: -84.42 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.97 Total: -8.13 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.05 Total: 52.75 kcal Total: -66.59 3.07 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194875502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.846 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds