Wall clock time and date at job start Tue Mar 31 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38063 * 119.57050 * 2 1 4 4 C 1.38839 * 119.32377 * 179.72586 * 3 2 1 5 5 C 1.38335 * 118.50819 * 0.27637 * 4 3 2 6 6 C 1.39092 * 119.09920 * 0.02562 * 5 4 3 7 7 N 1.39011 * 119.70973 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99428 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46693 * 180.02562 * 8 7 6 10 10 H 1.09001 * 110.62453 * 305.69989 * 9 8 7 11 11 C 1.55133 * 110.70925 * 68.80154 * 9 8 7 12 12 C 1.55114 * 101.55656 * 153.90406 * 11 9 8 13 13 N 1.47841 * 104.90849 * 323.16170 * 12 11 9 14 14 C 1.46897 * 111.00147 * 146.23658 * 13 12 11 15 15 H 1.09000 * 109.47326 * 299.15845 * 14 13 12 16 16 C 1.53000 * 109.47387 * 179.15706 * 14 13 12 17 17 C 1.50702 * 109.46856 * 59.15866 * 14 13 12 18 18 H 1.08000 * 120.00327 * 359.97438 * 17 14 13 19 19 C 1.37884 * 119.99880 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99871 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99670 * 180.02562 * 19 17 14 22 22 H 1.48491 * 109.47271 * 60.00253 * 21 19 17 23 23 H 1.48504 * 109.46821 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47359 * 299.99855 * 21 19 17 25 25 C 1.47448 * 108.56818 * 23.96997 * 13 12 11 26 26 N 1.31941 * 119.57231 * 180.32228 * 2 1 3 27 27 H 1.08995 * 109.47888 * 89.99458 * 1 2 3 28 28 H 1.08999 * 109.47331 * 210.00061 * 1 2 3 29 29 H 1.09000 * 109.47198 * 329.99431 * 1 2 3 30 30 H 1.08002 * 120.34117 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.74572 * 180.30634 * 4 3 2 32 32 H 1.08000 * 120.45398 * 180.02562 * 5 4 3 33 33 H 0.96994 * 120.00533 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47260 * 299.99820 * 8 7 6 35 35 H 1.08988 * 109.47146 * 60.00416 * 8 7 6 36 36 H 1.08993 * 110.99311 * 272.13096 * 11 9 8 37 37 H 1.09007 * 110.99071 * 35.94971 * 11 9 8 38 38 H 1.08999 * 110.42535 * 204.23827 * 12 11 9 39 39 H 1.09003 * 110.30958 * 82.02347 * 12 11 9 40 40 H 1.08997 * 109.47205 * 59.99857 * 16 14 13 41 41 H 1.08998 * 109.47489 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47001 * 300.00338 * 16 14 13 43 43 H 0.97002 * 120.00012 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.89026 * 239.60507 * 25 13 12 45 45 H 1.09000 * 109.88721 * 118.41420 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5767 1.1948 0.0058 5 6 4.2317 -0.0236 0.0055 6 6 3.4815 -1.1949 -0.0010 7 7 4.1267 -2.4262 -0.0019 8 6 5.5905 -2.4861 0.0035 9 6 6.0410 -3.9483 0.0006 10 1 5.5820 -4.4932 0.8256 11 6 5.7063 -4.6228 -1.3557 12 6 6.7767 -5.7437 -1.4179 13 7 7.9895 -5.1450 -0.8209 14 6 8.7691 -6.1531 -0.0902 15 1 8.1641 -6.5653 0.7173 16 6 10.0242 -5.5019 0.4944 17 6 9.1695 -7.2586 -1.0328 18 1 8.8739 -7.2169 -2.0708 19 6 9.9131 -8.3236 -0.5702 20 7 10.2726 -8.3747 0.6938 21 14 10.4099 -9.6936 -1.7388 22 1 11.2341 -9.1315 -2.8387 23 1 11.1980 -10.7127 -1.0002 24 1 9.1921 -10.3261 -2.3063 25 6 7.5795 -4.0452 0.0716 26 7 2.1581 -1.1475 -0.0065 27 1 -0.3635 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6469 2.1353 0.0004 31 1 4.1328 2.1206 0.0109 32 1 5.3109 -0.0649 0.0104 33 1 3.6078 -3.2457 -0.0069 34 1 5.9779 -1.9852 -0.8837 35 1 5.9711 -1.9901 0.8962 36 1 4.6996 -5.0405 -1.3462 37 1 5.8286 -3.9216 -2.1813 38 1 6.9656 -6.0324 -2.4519 39 1 6.4543 -6.6075 -0.8365 40 1 9.7347 -4.7022 1.1761 41 1 10.6030 -6.2500 1.0361 42 1 10.6293 -5.0896 -0.3131 43 1 10.7955 -9.1241 1.0194 44 1 8.0260 -3.1093 -0.2641 45 1 7.8907 -4.2615 1.0936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225344757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:56 Heat of formation + Delta-G solvation = 36.869552 kcal Electronic energy + Delta-G solvation = -22478.423582 eV Core-core repulsion = 19302.303730 eV Total energy + Delta-G solvation = -3176.119853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35821 -38.75698 -36.20221 -33.86384 -32.81734 -32.02745 -30.73730 -29.15030 -27.66627 -27.18273 -25.53837 -24.42856 -22.89171 -21.65468 -21.37138 -20.16568 -19.16711 -17.52698 -16.77194 -16.45694 -15.77837 -15.45532 -15.06641 -14.91842 -14.33925 -14.20353 -13.85757 -13.70110 -13.14672 -13.07751 -12.82942 -12.67550 -12.44198 -12.38323 -12.17174 -11.89019 -11.55278 -11.25385 -10.96068 -10.74656 -10.65784 -10.54883 -10.44921 -10.19695 -10.11527 -10.02574 -9.78701 -9.61037 -9.51825 -8.94071 -8.43478 -7.75074 -7.20153 -6.02167 -4.06694 1.17498 1.38717 3.05505 3.31475 3.35780 3.38856 3.80076 4.38710 4.40108 4.65054 4.77740 4.84897 4.90639 4.98208 5.11966 5.18072 5.27017 5.36298 5.38124 5.43524 5.47638 5.51077 5.58534 5.74109 5.83222 5.88329 5.98285 6.00591 6.13726 6.20488 6.31026 6.46476 6.48851 6.63914 6.69270 6.80464 6.96996 7.04879 7.06848 7.48391 7.52521 7.66711 7.82685 8.13256 8.15761 8.31519 8.56309 8.99789 9.58578 11.04642 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.002628 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.475680 B =10650.049926 C =11016.651114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.174 3.826 3 C -0.243 4.243 4 C -0.031 4.031 5 C -0.247 4.247 6 C 0.411 3.589 7 N -0.720 5.720 8 C 0.141 3.859 9 C -0.122 4.122 10 H 0.078 0.922 11 C -0.125 4.125 12 C 0.061 3.939 13 N -0.524 5.524 14 C 0.208 3.792 15 H -0.002 1.002 16 C -0.133 4.133 17 C -0.503 4.503 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.053 3.947 26 N -0.549 5.549 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.008 0.992 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 17.093 -0.165 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.036 3.964 3 C -0.266 4.266 4 C -0.057 4.057 5 C -0.272 4.272 6 C 0.174 3.826 7 N -0.351 5.351 8 C 0.016 3.984 9 C -0.142 4.142 10 H 0.096 0.904 11 C -0.163 4.163 12 C -0.067 4.067 13 N -0.249 5.249 14 C 0.102 3.898 15 H 0.016 0.984 16 C -0.192 4.192 17 C -0.541 4.541 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.076 4.076 26 N -0.268 5.268 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.614 16.368 -0.426 21.946 hybrid contribution 0.224 -0.665 0.114 0.711 sum -14.390 15.703 -0.312 21.301 Atomic orbital electron populations 1.20716 0.89184 1.03249 1.02963 1.20881 0.96261 0.87566 0.91739 1.21558 0.94814 0.98734 1.11464 1.21282 0.94236 0.97501 0.92672 1.21402 1.00914 0.91987 1.12935 1.18350 0.88076 0.86494 0.89649 1.44629 1.06111 1.04725 1.79667 1.21444 0.78308 0.97289 1.01345 1.22659 0.98485 0.94086 0.98985 0.90396 1.22863 0.98807 0.98518 0.96153 1.22794 0.88475 0.95060 1.00415 1.63724 1.18121 1.11129 1.31937 1.19432 0.90454 0.87977 0.91976 0.98409 1.21854 1.00019 0.98593 0.98687 1.21083 1.33343 1.03786 0.95929 0.92117 1.24936 0.95975 0.98195 0.95177 1.69877 1.38385 1.31274 1.13821 0.86579 0.78591 0.81484 0.80859 1.20210 1.21374 1.20366 1.22740 0.90658 0.97055 0.97143 1.66960 1.07750 1.30229 1.21857 0.90474 0.90635 0.90764 0.85511 0.85209 0.85121 0.76017 0.91539 0.91951 0.91822 0.91174 0.91097 0.93694 0.97353 0.89665 0.94705 0.92934 0.91672 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.00 0.37 -0.43 16 2 C 0.17 1.91 6.78 -82.61 -0.56 1.35 16 3 C -0.24 -2.33 9.73 -39.42 -0.38 -2.72 16 4 C -0.03 -0.30 10.17 -39.32 -0.40 -0.70 16 5 C -0.25 -2.78 9.33 -39.23 -0.37 -3.14 16 6 C 0.41 5.26 7.65 -155.01 -1.19 4.07 16 7 N -0.72 -8.64 5.61 -60.42 -0.34 -8.98 16 8 C 0.14 1.63 4.18 -4.04 -0.02 1.62 16 9 C -0.12 -1.69 2.97 -88.80 -0.26 -1.95 16 10 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.13 -1.81 6.35 -24.48 -0.16 -1.97 16 12 C 0.06 1.14 5.68 -2.19 -0.01 1.13 16 13 N -0.52 -11.00 5.02 -224.54 -1.13 -12.12 16 14 C 0.21 5.18 1.64 -68.86 -0.11 5.07 16 15 H 0.00 -0.04 8.10 -51.93 -0.42 -0.47 16 16 C -0.13 -3.24 8.84 37.16 0.33 -2.91 16 17 C -0.50 -13.71 8.07 -34.44 -0.28 -13.99 16 18 H 0.06 1.66 7.22 -52.49 -0.38 1.28 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 20 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 21 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.05 0.91 5.74 -2.83 -0.02 0.89 16 26 N -0.55 -7.24 10.30 -8.67 -0.09 -7.33 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.31 6.71 -52.49 -0.35 0.95 16 33 H 0.40 4.81 8.53 -40.82 -0.35 4.47 16 34 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 35 H 0.06 0.69 7.93 -51.94 -0.41 0.28 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 38 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 39 H 0.04 0.92 7.76 -51.93 -0.40 0.52 16 40 H 0.01 0.16 6.50 -51.93 -0.34 -0.17 16 41 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 45 H 0.05 0.98 6.35 -51.93 -0.33 0.65 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -29.75 355.62 -11.19 -40.94 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.45 Total: 2.80 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.15 Total: -12.17 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.93 Total: -53.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.75 -11.19 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225344757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.805 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds