Wall clock time and date at job start Tue Mar 31 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38063 * 119.57050 * 2 1 4 4 C 1.38839 * 119.32377 * 179.72586 * 3 2 1 5 5 C 1.38335 * 118.50819 * 0.27637 * 4 3 2 6 6 C 1.39092 * 119.09920 * 0.02562 * 5 4 3 7 7 N 1.39011 * 119.70973 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99428 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46693 * 180.02562 * 8 7 6 10 10 H 1.09001 * 110.62453 * 305.69989 * 9 8 7 11 11 C 1.55133 * 110.70925 * 68.80154 * 9 8 7 12 12 C 1.55114 * 101.55656 * 153.90406 * 11 9 8 13 13 N 1.47841 * 104.90849 * 323.16170 * 12 11 9 14 14 C 1.46897 * 111.00147 * 146.23658 * 13 12 11 15 15 H 1.09000 * 109.47326 * 299.15845 * 14 13 12 16 16 C 1.53000 * 109.47387 * 179.15706 * 14 13 12 17 17 C 1.50702 * 109.46856 * 59.15866 * 14 13 12 18 18 H 1.08000 * 120.00327 * 359.97438 * 17 14 13 19 19 C 1.37884 * 119.99880 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99871 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99670 * 180.02562 * 19 17 14 22 22 H 1.48491 * 109.47271 * 60.00253 * 21 19 17 23 23 H 1.48504 * 109.46821 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47359 * 299.99855 * 21 19 17 25 25 C 1.47448 * 108.56818 * 23.96997 * 13 12 11 26 26 N 1.31941 * 119.57231 * 180.32228 * 2 1 3 27 27 H 1.08995 * 109.47888 * 89.99458 * 1 2 3 28 28 H 1.08999 * 109.47331 * 210.00061 * 1 2 3 29 29 H 1.09000 * 109.47198 * 329.99431 * 1 2 3 30 30 H 1.08002 * 120.34117 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.74572 * 180.30634 * 4 3 2 32 32 H 1.08000 * 120.45398 * 180.02562 * 5 4 3 33 33 H 0.96994 * 120.00533 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47260 * 299.99820 * 8 7 6 35 35 H 1.08988 * 109.47146 * 60.00416 * 8 7 6 36 36 H 1.08993 * 110.99311 * 272.13096 * 11 9 8 37 37 H 1.09007 * 110.99071 * 35.94971 * 11 9 8 38 38 H 1.08999 * 110.42535 * 204.23827 * 12 11 9 39 39 H 1.09003 * 110.30958 * 82.02347 * 12 11 9 40 40 H 1.08997 * 109.47205 * 59.99857 * 16 14 13 41 41 H 1.08998 * 109.47489 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47001 * 300.00338 * 16 14 13 43 43 H 0.97002 * 120.00012 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.89026 * 239.60507 * 25 13 12 45 45 H 1.09000 * 109.88721 * 118.41420 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5767 1.1948 0.0058 5 6 4.2317 -0.0236 0.0055 6 6 3.4815 -1.1949 -0.0010 7 7 4.1267 -2.4262 -0.0019 8 6 5.5905 -2.4861 0.0035 9 6 6.0410 -3.9483 0.0006 10 1 5.5820 -4.4932 0.8256 11 6 5.7063 -4.6228 -1.3557 12 6 6.7767 -5.7437 -1.4179 13 7 7.9895 -5.1450 -0.8209 14 6 8.7691 -6.1531 -0.0902 15 1 8.1641 -6.5653 0.7173 16 6 10.0242 -5.5019 0.4944 17 6 9.1695 -7.2586 -1.0328 18 1 8.8739 -7.2169 -2.0708 19 6 9.9131 -8.3236 -0.5702 20 7 10.2726 -8.3747 0.6938 21 14 10.4099 -9.6936 -1.7388 22 1 11.2341 -9.1315 -2.8387 23 1 11.1980 -10.7127 -1.0002 24 1 9.1921 -10.3261 -2.3063 25 6 7.5795 -4.0452 0.0716 26 7 2.1581 -1.1475 -0.0065 27 1 -0.3635 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6469 2.1353 0.0004 31 1 4.1328 2.1206 0.0109 32 1 5.3109 -0.0649 0.0104 33 1 3.6078 -3.2457 -0.0069 34 1 5.9779 -1.9852 -0.8837 35 1 5.9711 -1.9901 0.8962 36 1 4.6996 -5.0405 -1.3462 37 1 5.8286 -3.9216 -2.1813 38 1 6.9656 -6.0324 -2.4519 39 1 6.4543 -6.6075 -0.8365 40 1 9.7347 -4.7022 1.1761 41 1 10.6030 -6.2500 1.0361 42 1 10.6293 -5.0896 -0.3131 43 1 10.7955 -9.1241 1.0194 44 1 8.0260 -3.1093 -0.2641 45 1 7.8907 -4.2615 1.0936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225344757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:55 Heat of formation + Delta-G solvation = 18.816371 kcal Electronic energy + Delta-G solvation = -22479.206427 eV Core-core repulsion = 19302.303730 eV Total energy + Delta-G solvation = -3176.902697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17151 -40.15498 -37.31009 -35.54593 -33.60111 -33.43658 -32.05995 -30.41472 -29.25715 -27.96206 -27.31857 -25.82854 -23.68817 -23.05377 -22.48618 -21.47719 -20.74390 -18.49484 -18.41340 -17.49414 -17.20975 -16.63507 -16.20632 -16.10880 -15.76309 -15.17538 -14.99141 -14.79092 -14.67449 -14.40330 -13.93432 -13.82021 -13.75457 -13.35785 -13.07249 -13.02521 -12.95018 -12.78073 -12.62091 -12.60239 -12.32255 -12.11013 -11.82986 -11.75501 -11.64437 -11.56546 -11.05255 -10.95156 -10.53195 -10.42578 -10.32961 -8.92479 -8.57977 -8.12695 -6.24509 0.39964 0.61164 1.40900 1.42519 1.50179 2.17654 2.41221 3.00714 3.15330 3.41414 3.62196 3.66236 3.72510 3.93694 4.02613 4.23152 4.32020 4.44363 4.47089 4.49337 4.53071 4.66902 4.73152 4.77302 4.80212 4.83778 4.86672 4.92055 4.98686 5.02245 5.07012 5.12238 5.22632 5.23618 5.26942 5.36498 5.46267 5.47818 5.71898 5.74713 5.78358 6.13873 6.25075 6.38260 6.64491 6.70681 6.90173 7.31254 7.44965 8.92985 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.002628 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.475680 B =10650.049926 C =11016.651114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.153 3.847 3 C -0.241 4.241 4 C -0.033 4.033 5 C -0.260 4.260 6 C 0.388 3.612 7 N -0.723 5.723 8 C 0.154 3.846 9 C -0.108 4.108 10 H 0.074 0.926 11 C -0.109 4.109 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.214 3.786 15 H -0.038 1.038 16 C -0.122 4.122 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.920 5.920 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.050 3.950 26 N -0.577 5.577 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.402 0.598 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.084 0.916 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.858 19.181 -0.892 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.015 3.985 3 C -0.264 4.264 4 C -0.059 4.059 5 C -0.285 4.285 6 C 0.153 3.847 7 N -0.355 5.355 8 C 0.030 3.970 9 C -0.128 4.128 10 H 0.092 0.908 11 C -0.147 4.147 12 C -0.071 4.071 13 N -0.260 5.260 14 C 0.107 3.893 15 H -0.020 1.020 16 C -0.180 4.180 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.560 5.560 21 Si 0.785 3.215 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.078 4.078 26 N -0.297 5.297 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.647 18.483 -1.158 24.244 hybrid contribution 0.480 -1.237 0.356 1.374 sum -15.168 17.245 -0.802 22.980 Atomic orbital electron populations 1.20783 0.87312 1.04009 1.03705 1.21474 0.97745 0.87630 0.91628 1.21930 0.95099 0.99385 1.09964 1.21695 0.94621 0.98122 0.91449 1.21622 1.01489 0.92145 1.13229 1.18597 0.88398 0.87002 0.90716 1.44549 1.05959 1.04703 1.80294 1.21266 0.78379 0.95256 1.02131 1.22469 0.96055 0.95813 0.98440 0.90798 1.22758 0.98095 0.96978 0.96845 1.22794 0.89263 0.95919 0.99147 1.63633 1.19271 1.10793 1.32275 1.19198 0.90691 0.88612 0.90833 1.02021 1.21672 0.99289 0.98425 0.98631 1.21366 1.33446 1.04962 0.95989 0.92755 1.25718 0.96001 1.00451 0.96680 1.70006 1.38837 1.31904 1.15285 0.85596 0.78345 0.78681 0.78924 1.19664 1.20891 1.19787 1.22798 0.93141 0.96146 0.95747 1.66959 1.08229 1.31670 1.22874 0.89640 0.91465 0.88415 0.82746 0.82356 0.84184 0.76276 0.90861 0.91044 0.90009 0.90095 0.91964 0.96128 0.94925 0.92266 0.95067 0.92927 0.89805 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.17 71.24 0.72 -0.64 16 2 C 0.15 3.11 6.78 42.50 0.29 3.39 16 3 C -0.24 -3.98 9.73 22.37 0.22 -3.76 16 4 C -0.03 -0.55 10.17 22.44 0.23 -0.33 16 5 C -0.26 -5.32 9.33 22.50 0.21 -5.11 16 6 C 0.39 9.45 7.65 133.04 1.02 10.47 16 7 N -0.72 -16.42 5.61 -345.07 -1.93 -18.36 16 8 C 0.15 3.28 4.18 86.38 0.36 3.64 16 9 C -0.11 -2.86 2.97 -9.61 -0.03 -2.89 16 10 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 11 C -0.11 -3.01 6.35 32.05 0.20 -2.81 16 12 C 0.06 2.17 5.68 86.85 0.49 2.66 16 13 N -0.54 -22.61 5.02 -864.31 -4.34 -26.95 16 14 C 0.21 10.97 1.64 44.17 0.07 11.04 16 15 H -0.04 -2.16 8.10 -2.39 -0.02 -2.18 16 16 C -0.12 -6.01 8.84 71.98 0.64 -5.38 16 17 C -0.52 -28.96 8.07 25.60 0.21 -28.76 16 18 H 0.05 3.03 7.22 -2.91 -0.02 3.01 16 19 C 0.01 0.56 5.30 84.66 0.45 1.01 16 20 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 21 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.05 1.67 5.74 86.65 0.50 2.17 16 26 N -0.58 -14.70 10.30 -181.34 -1.87 -16.57 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.14 2.47 6.71 -2.91 -0.02 2.45 16 33 H 0.40 9.21 8.53 -92.71 -0.79 8.42 16 34 H 0.07 1.49 7.84 -2.39 -0.02 1.47 16 35 H 0.07 1.42 7.93 -2.39 -0.02 1.40 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.11 7.98 -2.38 -0.02 2.10 16 38 H 0.06 2.44 7.89 -2.39 -0.02 2.42 16 39 H 0.02 0.87 7.76 -2.39 -0.02 0.85 16 40 H 0.03 1.39 6.50 -2.39 -0.02 1.38 16 41 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 42 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.08 2.49 7.82 -2.39 -0.02 2.47 16 45 H 0.04 1.51 6.35 -2.39 -0.02 1.49 16 Total: -1.00 -65.52 355.62 -0.12 -65.64 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.18 Total: 18.58 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 5.58 Total: -15.27 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -7.90 Total: -115.12 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.52 -0.12 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225344757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.460 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds