Wall clock time and date at job start Tue Mar 31 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36426 * 124.81862 * 2 1 4 4 C 1.34445 * 109.14095 * 179.97438 * 3 2 1 5 5 C 1.46780 * 106.41247 * 359.97438 * 4 3 2 6 6 C 1.46780 * 127.03472 * 180.02562 * 5 4 3 7 7 C 1.35185 * 119.99686 * 359.95893 * 6 5 4 8 8 C 1.41707 * 119.99982 * 179.97438 * 7 6 5 9 9 O 1.21753 * 120.00059 * 355.04777 * 8 7 6 10 10 N 1.34783 * 120.00019 * 175.04500 * 8 7 6 11 11 C 1.46958 * 120.59264 * 4.93965 * 10 8 7 12 12 C 1.53810 * 108.40071 * 124.75517 * 11 10 8 13 13 N 1.46974 * 108.57895 * 49.63642 * 12 11 10 14 14 C 1.36934 * 120.59463 * 124.66819 * 13 12 11 15 15 H 1.07997 * 119.99891 * 327.57678 * 14 13 12 16 16 C 1.38813 * 119.99615 * 147.57944 * 14 13 12 17 17 N 1.31618 * 119.99683 * 166.12539 * 16 14 13 18 18 Si 1.86795 * 120.00422 * 346.12038 * 16 14 13 19 19 H 1.48507 * 109.46982 * 91.27393 * 18 16 14 20 20 H 1.48496 * 109.47317 * 211.27827 * 18 16 14 21 21 H 1.48503 * 109.47050 * 331.28034 * 18 16 14 22 22 C 1.46971 * 118.80838 * 304.64877 * 13 12 11 23 23 C 1.46960 * 120.59357 * 185.21521 * 10 8 7 24 24 C 1.34832 * 124.81244 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47208 * 270.02770 * 1 2 3 26 26 H 1.09003 * 109.46538 * 30.02797 * 1 2 3 27 27 H 1.08999 * 109.47017 * 150.02660 * 1 2 3 28 28 H 1.08002 * 125.43310 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.78808 * 180.02562 * 4 3 2 30 30 H 1.07991 * 120.00157 * 179.97438 * 6 5 4 31 31 H 1.08004 * 120.00250 * 0.02562 * 7 6 5 32 32 H 1.09003 * 109.61090 * 244.53784 * 11 10 8 33 33 H 1.08996 * 109.61452 * 5.04962 * 11 10 8 34 34 H 1.08997 * 109.74675 * 289.85147 * 12 11 10 35 35 H 1.09001 * 109.53778 * 169.29789 * 12 11 10 36 36 H 0.96996 * 119.99986 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.60977 * 295.47869 * 22 13 12 38 38 H 1.08997 * 109.74733 * 175.05273 * 22 13 12 39 39 H 1.09008 * 109.61007 * 354.95035 * 23 10 8 40 40 H 1.09003 * 109.60992 * 115.46130 * 23 10 8 41 41 H 1.07998 * 125.93130 * 359.75767 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1200 0.0000 4 6 3.5384 0.7567 0.0006 5 6 3.5572 -0.7110 0.0016 6 6 4.7402 -1.5799 0.0030 7 6 5.9780 -1.0365 0.0026 8 6 7.1201 -1.8754 0.0046 9 8 6.9889 -3.0822 0.0975 10 7 8.3517 -1.3372 -0.0966 11 6 8.5326 0.1212 -0.1008 12 6 9.5172 0.4915 1.0213 13 7 10.7027 -0.3696 0.9072 14 6 11.9540 0.1771 0.8044 15 1 12.0904 1.1225 0.3006 16 6 13.0469 -0.4839 1.3479 17 7 14.2677 -0.1145 1.0229 18 14 12.7853 -1.8977 2.5404 19 1 12.7343 -3.1770 1.7879 20 1 13.9071 -1.9395 3.5124 21 1 11.5062 -1.7006 3.2687 22 6 10.5212 -1.8281 0.9058 23 6 9.5371 -2.1983 -0.2107 24 6 2.2348 -1.1070 0.0005 25 1 -0.3633 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.8791 2.1365 -0.0004 29 1 4.3948 1.4147 0.0011 30 1 4.6217 -2.6533 0.0041 31 1 6.0965 0.0370 0.0017 32 1 8.9351 0.4371 -1.0633 33 1 7.5742 0.6093 0.0756 34 1 9.0449 0.3369 1.9915 35 1 9.8122 1.5357 0.9175 36 1 15.0314 -0.5761 1.4029 37 1 10.1204 -2.1478 1.8677 38 1 11.4783 -2.3181 0.7273 39 1 9.2421 -3.2426 -0.1069 40 1 10.0095 -2.0438 -1.1809 41 1 1.8786 -2.1266 0.0046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277154565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:20 Heat of formation + Delta-G solvation = 76.497620 kcal Electronic energy + Delta-G solvation = -22333.118156 eV Core-core repulsion = 19022.883611 eV Total energy + Delta-G solvation = -3310.234545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21586 -39.71691 -37.02958 -34.36985 -33.88640 -31.92912 -31.38522 -30.62880 -29.16579 -27.41545 -26.38331 -23.99140 -23.57117 -22.35141 -20.88314 -20.30643 -19.46375 -18.06660 -17.63682 -16.86824 -16.25324 -15.63784 -15.44098 -15.15846 -14.57212 -14.46126 -14.16768 -13.87401 -13.62154 -13.35423 -13.18982 -12.89363 -12.76754 -12.66600 -12.40790 -12.37965 -12.09316 -11.83469 -11.40732 -10.98144 -10.77566 -10.37026 -10.26810 -10.16164 -9.94484 -9.55206 -9.36430 -8.76495 -8.70189 -8.24173 -7.81921 -6.85640 -5.94774 -3.38743 1.01667 2.12978 2.59880 2.95819 3.33699 3.48286 3.52801 3.57251 3.86468 4.30869 4.52570 4.62935 4.66624 4.71564 4.90994 4.91788 4.98212 5.16808 5.31465 5.38950 5.43527 5.66014 5.67619 5.75600 5.87527 5.91926 5.95309 6.11253 6.21230 6.31647 6.45039 6.48734 6.50413 6.59726 6.74140 6.77442 6.88656 7.01703 7.07477 7.93115 7.98871 8.33479 8.64055 8.91420 9.69707 10.08800 11.20928 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.003088 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.295981 B = 9066.521852 C = 9467.175975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.022 4.022 4 C -0.171 4.171 5 C -0.170 4.170 6 C 0.024 3.976 7 C -0.232 4.232 8 C 0.547 3.453 9 O -0.569 6.569 10 N -0.598 5.598 11 C 0.087 3.913 12 C 0.134 3.866 13 N -0.607 5.607 14 C -0.263 4.263 15 H 0.086 0.914 16 C 0.026 3.974 17 N -0.911 5.911 18 Si 0.889 3.111 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.269 1.269 22 C 0.112 3.888 23 C 0.096 3.904 24 C 0.025 3.975 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.163 0.837 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.263 0.737 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.970 1.816 -3.008 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.124 5.124 3 C -0.149 4.149 4 C -0.194 4.194 5 C -0.177 4.177 6 C 0.004 3.996 7 C -0.253 4.253 8 C 0.340 3.660 9 O -0.452 6.452 10 N -0.329 5.329 11 C -0.037 4.037 12 C 0.008 3.992 13 N -0.331 5.331 14 C -0.391 4.391 15 H 0.103 0.897 16 C -0.174 4.174 17 N -0.554 5.554 18 Si 0.720 3.280 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.194 1.194 22 C -0.014 4.014 23 C -0.028 4.028 24 C -0.108 4.108 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.180 0.820 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -28.187 1.245 -2.931 28.366 hybrid contribution 0.044 -0.634 0.671 0.925 sum -28.143 0.611 -2.260 28.240 Atomic orbital electron populations 1.22086 0.77250 1.04489 1.03395 1.43548 1.06532 1.06043 1.56252 1.21696 0.90735 0.91097 1.11347 1.22119 0.95887 0.93809 1.07620 1.19836 0.91542 0.92947 1.13403 1.21628 0.90097 0.98462 0.89454 1.21887 0.92679 1.00548 1.10175 1.17128 0.83722 0.88083 0.77055 1.90751 1.86639 1.15465 1.52370 1.47920 1.06109 1.07557 1.71337 1.22540 1.00251 0.79691 1.01215 1.21409 0.87655 0.95578 0.94597 1.44267 1.03173 0.99708 1.85961 1.18911 0.81643 1.07575 1.30981 0.89660 1.25396 0.95172 0.98655 0.98150 1.69771 0.97542 1.42916 1.45175 0.86871 0.76990 0.82171 0.81971 1.21396 1.23131 1.19428 1.21775 0.97822 0.86230 0.95623 1.22176 0.85572 0.94749 1.00301 1.22252 0.90184 0.91500 1.06902 0.90804 0.89740 0.89763 0.81958 0.83757 0.85361 0.85504 0.91314 0.90130 0.95368 0.90614 0.92682 0.95018 0.90157 0.89758 0.91393 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.03 59.85 0.66 0.89 16 2 N -0.45 -3.35 3.09 -124.11 -0.38 -3.74 16 3 C -0.02 -0.18 11.31 -16.85 -0.19 -0.37 16 4 C -0.17 -1.74 10.45 -37.47 -0.39 -2.13 16 5 C -0.17 -1.92 6.26 -103.06 -0.65 -2.57 16 6 C 0.02 0.32 9.65 -37.22 -0.36 -0.04 16 7 C -0.23 -3.38 8.75 -39.34 -0.34 -3.72 16 8 C 0.55 9.99 7.45 -14.93 -0.11 9.88 16 9 O -0.57 -12.00 15.53 5.14 0.08 -11.92 16 10 N -0.60 -11.09 2.94 -175.60 -0.52 -11.61 16 11 C 0.09 1.43 6.50 -3.37 -0.02 1.41 16 12 C 0.13 2.61 6.69 -3.36 -0.02 2.59 16 13 N -0.61 -14.59 2.70 -171.76 -0.46 -15.05 16 14 C -0.26 -7.32 10.04 -15.06 -0.15 -7.47 16 15 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 16 C 0.03 0.74 5.32 -17.43 -0.09 0.65 16 17 N -0.91 -28.00 13.97 55.49 0.78 -27.22 16 18 Si 0.89 22.92 24.31 -169.99 -4.13 18.79 16 19 H -0.29 -7.14 6.64 56.52 0.38 -6.76 16 20 H -0.30 -7.92 7.11 56.52 0.40 -7.51 16 21 H -0.27 -6.91 6.39 56.52 0.36 -6.55 16 22 C 0.11 2.56 4.31 -3.59 -0.02 2.55 16 23 C 0.10 1.93 6.60 -3.60 -0.02 1.91 16 24 C 0.02 0.22 11.39 -16.30 -0.19 0.03 16 25 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.08 0.16 8.13 -51.93 -0.42 -0.26 16 27 H 0.08 0.17 8.13 -51.93 -0.42 -0.25 16 28 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 29 H 0.14 1.32 7.52 -52.49 -0.39 0.93 16 30 H 0.13 1.71 7.46 -52.49 -0.39 1.32 16 31 H 0.13 1.60 4.79 -52.48 -0.25 1.35 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.05 5.33 -51.93 -0.28 0.77 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.40 7.93 -51.93 -0.41 0.98 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.03 0.75 6.93 -51.93 -0.36 0.39 16 38 H 0.08 1.96 4.53 -51.93 -0.24 1.72 16 39 H 0.08 1.68 6.99 -51.92 -0.36 1.32 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -35.43 331.22 -7.23 -42.67 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.69 Total: -0.52 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.89 Total: 3.61 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.59 Total: -57.62 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.13 Total: 18.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.43 -7.23 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277154565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.166 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds