Wall clock time and date at job start Tue Mar 31 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36426 * 124.81862 * 2 1 4 4 C 1.34445 * 109.14095 * 179.97438 * 3 2 1 5 5 C 1.46780 * 106.41247 * 359.97438 * 4 3 2 6 6 C 1.46780 * 127.03472 * 180.02562 * 5 4 3 7 7 C 1.35185 * 119.99686 * 359.95893 * 6 5 4 8 8 C 1.41707 * 119.99982 * 179.97438 * 7 6 5 9 9 O 1.21753 * 120.00059 * 355.04777 * 8 7 6 10 10 N 1.34783 * 120.00019 * 175.04500 * 8 7 6 11 11 C 1.46958 * 120.59264 * 4.93965 * 10 8 7 12 12 C 1.53810 * 108.40071 * 124.75517 * 11 10 8 13 13 N 1.46974 * 108.57895 * 49.63642 * 12 11 10 14 14 C 1.36934 * 120.59463 * 124.66819 * 13 12 11 15 15 H 1.07997 * 119.99891 * 327.57678 * 14 13 12 16 16 C 1.38813 * 119.99615 * 147.57944 * 14 13 12 17 17 N 1.31618 * 119.99683 * 166.12539 * 16 14 13 18 18 Si 1.86795 * 120.00422 * 346.12038 * 16 14 13 19 19 H 1.48507 * 109.46982 * 91.27393 * 18 16 14 20 20 H 1.48496 * 109.47317 * 211.27827 * 18 16 14 21 21 H 1.48503 * 109.47050 * 331.28034 * 18 16 14 22 22 C 1.46971 * 118.80838 * 304.64877 * 13 12 11 23 23 C 1.46960 * 120.59357 * 185.21521 * 10 8 7 24 24 C 1.34832 * 124.81244 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47208 * 270.02770 * 1 2 3 26 26 H 1.09003 * 109.46538 * 30.02797 * 1 2 3 27 27 H 1.08999 * 109.47017 * 150.02660 * 1 2 3 28 28 H 1.08002 * 125.43310 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.78808 * 180.02562 * 4 3 2 30 30 H 1.07991 * 120.00157 * 179.97438 * 6 5 4 31 31 H 1.08004 * 120.00250 * 0.02562 * 7 6 5 32 32 H 1.09003 * 109.61090 * 244.53784 * 11 10 8 33 33 H 1.08996 * 109.61452 * 5.04962 * 11 10 8 34 34 H 1.08997 * 109.74675 * 289.85147 * 12 11 10 35 35 H 1.09001 * 109.53778 * 169.29789 * 12 11 10 36 36 H 0.96996 * 119.99986 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.60977 * 295.47869 * 22 13 12 38 38 H 1.08997 * 109.74733 * 175.05273 * 22 13 12 39 39 H 1.09008 * 109.61007 * 354.95035 * 23 10 8 40 40 H 1.09003 * 109.60992 * 115.46130 * 23 10 8 41 41 H 1.07998 * 125.93130 * 359.75767 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1200 0.0000 4 6 3.5384 0.7567 0.0006 5 6 3.5572 -0.7110 0.0016 6 6 4.7402 -1.5799 0.0030 7 6 5.9780 -1.0365 0.0026 8 6 7.1201 -1.8754 0.0046 9 8 6.9889 -3.0822 0.0975 10 7 8.3517 -1.3372 -0.0966 11 6 8.5326 0.1212 -0.1008 12 6 9.5172 0.4915 1.0213 13 7 10.7027 -0.3696 0.9072 14 6 11.9540 0.1771 0.8044 15 1 12.0904 1.1225 0.3006 16 6 13.0469 -0.4839 1.3479 17 7 14.2677 -0.1145 1.0229 18 14 12.7853 -1.8977 2.5404 19 1 12.7343 -3.1770 1.7879 20 1 13.9071 -1.9395 3.5124 21 1 11.5062 -1.7006 3.2687 22 6 10.5212 -1.8281 0.9058 23 6 9.5371 -2.1983 -0.2107 24 6 2.2348 -1.1070 0.0005 25 1 -0.3633 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.8791 2.1365 -0.0004 29 1 4.3948 1.4147 0.0011 30 1 4.6217 -2.6533 0.0041 31 1 6.0965 0.0370 0.0017 32 1 8.9351 0.4371 -1.0633 33 1 7.5742 0.6093 0.0756 34 1 9.0449 0.3369 1.9915 35 1 9.8122 1.5357 0.9175 36 1 15.0314 -0.5761 1.4029 37 1 10.1204 -2.1478 1.8677 38 1 11.4783 -2.3181 0.7273 39 1 9.2421 -3.2426 -0.1069 40 1 10.0095 -2.0438 -1.1809 41 1 1.8786 -2.1266 0.0046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277154565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:20 Heat of formation + Delta-G solvation = 53.662439 kcal Electronic energy + Delta-G solvation = -22334.108364 eV Core-core repulsion = 19022.883611 eV Total energy + Delta-G solvation = -3311.224753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85327 -41.13921 -38.67950 -35.65350 -35.25199 -33.50601 -32.77182 -32.01002 -29.95830 -28.94157 -27.18748 -25.41308 -25.22282 -23.73273 -22.26794 -21.13282 -20.50380 -19.38178 -18.83462 -18.26818 -17.61914 -17.03276 -16.75907 -16.20056 -16.07057 -15.98542 -15.53231 -15.13120 -14.81523 -14.66561 -14.26179 -14.19643 -14.02244 -13.73151 -13.52070 -13.47926 -13.21394 -12.97942 -12.82951 -12.53064 -12.31708 -12.08169 -11.99397 -11.81830 -11.60532 -11.16836 -10.96993 -10.71294 -9.85387 -9.33823 -8.85019 -8.61498 -8.18623 -5.58502 0.00698 1.27588 1.38277 1.46807 1.48205 2.00198 2.06669 2.17734 2.37920 2.69990 3.07435 3.26755 3.78534 3.97246 4.06749 4.09703 4.14530 4.15901 4.24663 4.35633 4.44148 4.49529 4.52044 4.56761 4.63827 4.70489 4.72957 4.77541 4.86682 4.93100 5.08950 5.12416 5.17598 5.38854 5.61930 5.64583 5.86428 5.94986 6.12081 6.21832 6.45638 6.56656 6.86119 7.25133 7.55456 7.99529 9.00717 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.003088 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.295981 B = 9066.521852 C = 9467.175975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.446 5.446 3 C -0.019 4.019 4 C -0.193 4.193 5 C -0.214 4.214 6 C 0.054 3.946 7 C -0.263 4.263 8 C 0.547 3.453 9 O -0.607 6.607 10 N -0.605 5.605 11 C 0.098 3.902 12 C 0.129 3.871 13 N -0.620 5.620 14 C -0.247 4.247 15 H 0.062 0.938 16 C -0.029 4.029 17 N -0.955 5.955 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.308 1.308 21 H -0.267 1.267 22 C 0.112 3.888 23 C 0.105 3.895 24 C 0.038 3.962 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.192 0.808 29 H 0.148 0.852 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.263 0.737 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.033 2.292 -3.012 32.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.119 5.119 3 C -0.146 4.146 4 C -0.216 4.216 5 C -0.221 4.221 6 C 0.033 3.967 7 C -0.284 4.284 8 C 0.343 3.657 9 O -0.493 6.493 10 N -0.336 5.336 11 C -0.026 4.026 12 C 0.003 3.997 13 N -0.345 5.345 14 C -0.376 4.376 15 H 0.079 0.921 16 C -0.224 4.224 17 N -0.601 5.601 18 Si 0.775 3.225 19 H -0.203 1.203 20 H -0.237 1.237 21 H -0.192 1.192 22 C -0.014 4.014 23 C -0.019 4.019 24 C -0.097 4.097 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.209 0.791 29 H 0.166 0.834 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -32.321 1.750 -2.941 32.501 hybrid contribution 1.007 -0.716 0.630 1.387 sum -31.313 1.034 -2.312 31.416 Atomic orbital electron populations 1.22415 0.74545 1.06217 1.04692 1.43921 1.08235 1.05416 1.54343 1.22157 0.90283 0.92490 1.09690 1.22338 0.97202 0.93440 1.08639 1.19889 0.91830 0.93564 1.16812 1.21740 0.90620 0.98443 0.85883 1.21695 0.91578 1.00824 1.14284 1.17652 0.84254 0.87982 0.75811 1.90721 1.87063 1.17165 1.54363 1.47995 1.05747 1.08147 1.71743 1.22532 1.01299 0.78768 0.99963 1.21634 0.86587 0.95365 0.96082 1.44410 1.03223 1.00667 1.86240 1.18877 0.83311 1.06340 1.29077 0.92070 1.25965 0.94998 1.01429 0.99994 1.69886 0.98337 1.44943 1.46961 0.85952 0.76433 0.80186 0.79923 1.20260 1.23682 1.19235 1.21699 0.97740 0.85549 0.96384 1.21903 0.85783 0.95195 0.99059 1.22669 0.89720 0.92990 1.04334 0.89664 0.87987 0.88253 0.79145 0.83440 0.86132 0.83670 0.91001 0.86197 0.94911 0.89785 0.92833 0.95579 0.91866 0.89783 0.91249 0.79022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.14 11.03 127.77 1.41 1.55 16 2 N -0.45 -4.98 3.09 -546.58 -1.69 -6.67 16 3 C -0.02 -0.25 11.31 83.11 0.94 0.69 16 4 C -0.19 -3.46 10.45 23.64 0.25 -3.21 16 5 C -0.21 -4.38 6.26 -18.85 -0.12 -4.50 16 6 C 0.05 1.36 9.65 23.80 0.23 1.59 16 7 C -0.26 -7.31 8.75 22.42 0.20 -7.11 16 8 C 0.55 19.58 7.45 85.10 0.63 20.22 16 9 O -0.61 -25.61 15.53 -4.52 -0.07 -25.68 16 10 N -0.61 -21.88 2.94 -827.66 -2.43 -24.31 16 11 C 0.10 3.02 6.50 86.57 0.56 3.58 16 12 C 0.13 4.85 6.69 86.56 0.58 5.43 16 13 N -0.62 -29.69 2.70 -697.33 -1.88 -31.58 16 14 C -0.25 -13.92 10.04 84.03 0.84 -13.08 16 15 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 16 C -0.03 -1.69 5.32 84.86 0.45 -1.24 16 17 N -0.96 -60.19 13.97 21.65 0.30 -59.89 16 18 Si 0.95 48.20 24.31 68.60 1.67 49.86 16 19 H -0.28 -13.43 6.64 99.48 0.66 -12.77 16 20 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 21 H -0.27 -13.39 6.39 99.48 0.64 -12.76 16 22 C 0.11 5.13 4.31 86.41 0.37 5.50 16 23 C 0.11 4.22 6.60 86.42 0.57 4.79 16 24 C 0.04 0.56 11.39 84.19 0.96 1.52 16 25 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.10 -0.07 8.13 -2.39 -0.02 -0.09 16 27 H 0.10 -0.02 8.13 -2.39 -0.02 -0.04 16 28 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.15 2.39 7.52 -2.91 -0.02 2.37 16 30 H 0.12 3.13 7.46 -2.92 -0.02 3.11 16 31 H 0.15 3.34 4.79 -2.91 -0.01 3.33 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.12 2.78 5.33 -2.39 -0.01 2.77 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 3.00 7.93 -2.39 -0.02 2.98 16 36 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.03 1.23 6.93 -2.39 -0.02 1.21 16 38 H 0.06 3.09 4.53 -2.39 -0.01 3.08 16 39 H 0.08 3.36 6.99 -2.38 -0.02 3.34 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -78.03 331.22 4.68 -73.35 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.91 Total: 9.18 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 7.88 Total: 15.74 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -5.70 Total: -122.45 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.67 Total: 49.86 kcal Total: -78.03 4.68 -73.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277154565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.008 kcal (2) G-P(sol) polarization free energy of solvation -78.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds