Wall clock time and date at job start Tue Mar 31 2020 03:47:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47081 * 35.91258 * 3 2 1
5 5 C 1.36938 * 120.00101 * 95.97754 * 4 3 2
6 6 H 1.08001 * 120.00256 * 160.80788 * 5 4 3
7 7 C 1.38813 * 119.99818 * 341.07728 * 5 4 3
8 8 N 1.31617 * 120.00026 * 337.35775 * 7 5 4
9 9 Si 1.86805 * 119.99584 * 157.35436 * 7 5 4
10 10 H 1.48502 * 109.47232 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.46755 * 120.00505 * 9 7 5
12 12 H 1.48498 * 109.46863 * 240.00271 * 9 7 5
13 13 C 1.46501 * 119.99989 * 275.97078 * 4 3 2
14 14 H 1.09001 * 110.43632 * 358.91854 * 13 4 3
15 15 C 1.54626 * 110.49058 * 236.22912 * 13 4 3
16 16 C 1.54479 * 101.76657 * 266.12383 * 15 13 4
17 17 N 1.46761 * 105.47379 * 334.58093 * 16 15 13
18 18 C 1.46497 * 124.35299 * 197.04182 * 17 16 15
19 19 C 1.53004 * 109.47103 * 270.00239 * 18 17 16
20 20 F 1.39904 * 109.46998 * 59.99517 * 19 18 17
21 21 F 1.39895 * 109.47436 * 179.97438 * 19 18 17
22 22 F 1.39907 * 109.46882 * 299.99685 * 19 18 17
23 23 C 1.34419 * 111.29908 * 17.01474 * 17 16 15
24 24 O 1.21281 * 124.94258 * 179.55203 * 23 17 16
25 25 H 4.40633 * 5.51567 * 180.02562 * 4 1 2
26 26 H 1.08998 * 109.47360 * 275.91216 * 3 2 1
27 27 H 1.08999 * 109.47328 * 155.91154 * 3 2 1
28 28 H 0.96998 * 119.99545 * 179.97438 * 8 7 5
29 29 H 1.09006 * 110.96875 * 24.23874 * 15 13 4
30 30 H 1.09003 * 110.96911 * 147.99785 * 15 13 4
31 31 H 1.09004 * 110.24332 * 215.58510 * 16 15 13
32 32 H 1.08995 * 110.31878 * 93.62106 * 16 15 13
33 33 H 1.09006 * 109.47305 * 29.99511 * 18 17 16
34 34 H 1.08996 * 109.47717 * 149.99968 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1348 -1.1178 -0.8101
5 6 3.4794 -0.9153 -2.1199
6 1 4.1156 -1.6257 -2.6270
7 6 3.0156 0.2059 -2.7942
8 7 1.9321 0.8245 -2.3751
9 14 3.9294 0.8367 -4.2965
10 1 5.1067 -0.0294 -4.5595
11 1 3.0240 0.8114 -5.4733
12 1 4.3835 2.2290 -4.0510
13 6 3.2552 -2.4528 -0.2190
14 1 2.9595 -2.4327 0.8299
15 6 4.7005 -2.9819 -0.3668
16 6 4.6056 -3.7963 -1.6760
17 7 3.1968 -4.1914 -1.7901
18 6 2.7057 -5.2578 -2.6664
19 6 2.3523 -4.6713 -4.0347
20 9 3.4917 -4.0897 -4.6011
21 9 1.8838 -5.6896 -4.8717
22 9 1.3587 -3.6982 -3.8823
23 6 2.4151 -3.4495 -0.9868
24 8 1.2112 -3.5622 -0.8920
25 1 -1.0498 -0.0003 -0.0004
26 1 3.0094 -0.1050 1.0222
27 1 3.0090 0.9390 -0.4194
28 1 1.6082 1.6081 -2.8462
29 1 5.4084 -2.1594 -0.4695
30 1 4.9690 -3.6230 0.4729
31 1 5.2416 -4.6796 -1.6177
32 1 4.8946 -3.1796 -2.5271
33 1 3.4798 -6.0159 -2.7852
34 1 1.8181 -5.7109 -2.2251
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000281226939.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:03
Heat of formation + Delta-G solvation = -112.277885 kcal
Electronic energy + Delta-G solvation = -24920.165893 eV
Core-core repulsion = 20826.336931 eV
Total energy + Delta-G solvation = -4093.828962 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 290.098 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-51.06712 -48.60902 -48.56919 -41.39118 -37.85771 -37.05714 -34.22714 -33.47272
-31.97584 -29.25895 -28.20468 -27.89299 -24.79501 -24.24004 -22.27185 -20.83176
-19.55182 -19.49346 -19.19216 -18.68187 -18.18158 -17.80308 -17.12784 -16.21734
-16.12109 -15.52885 -15.47755 -15.19919 -15.03216 -15.00517 -14.97055 -14.74871
-14.69985 -14.35831 -14.30303 -13.58036 -13.50127 -13.32147 -13.07002 -12.99608
-12.77530 -12.28940 -12.17281 -11.93341 -11.79075 -11.16566 -10.72367 -10.60203
-10.29044 -9.82234 -8.91084 -7.84331 -5.28032 1.38116 1.44273 1.48056
1.54791 1.90555 1.95983 2.37680 2.52053 2.60567 2.88500 3.01926
3.26893 3.31327 3.71003 3.76048 3.83522 4.11103 4.21092 4.25669
4.29824 4.47346 4.76233 4.79390 4.91557 5.22529 5.27775 5.40801
5.57920 5.63865 5.77822 6.07475 6.26808 7.05368 7.27971 7.38176
7.77640 8.19803 9.16901
Molecular weight = 290.10amu
Principal moments of inertia in cm(-1)
A = 0.014265 B = 0.008648 C = 0.007244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1962.327099 B = 3237.091672 C = 3864.566008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.304 4.304
2 C -0.128 4.128
3 C 0.270 3.730
4 N -0.568 5.568
5 C -0.259 4.259
6 H 0.092 0.908
7 C -0.044 4.044
8 N -0.910 5.910
9 Si 0.946 3.054
10 H -0.257 1.257
11 H -0.314 1.314
12 H -0.287 1.287
13 C 0.132 3.868
14 H 0.099 0.901
15 C -0.125 4.125
16 C 0.103 3.897
17 N -0.617 5.617
18 C 0.093 3.907
19 C 0.420 3.580
20 F -0.188 7.188
21 F -0.183 7.183
22 F -0.203 7.203
23 C 0.504 3.496
24 O -0.573 6.573
25 H 0.209 0.791
26 H 0.080 0.920
27 H 0.076 0.924
28 H 0.243 0.757
29 H 0.100 0.900
30 H 0.116 0.884
31 H 0.122 0.878
32 H 0.059 0.941
33 H 0.173 0.827
34 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.252 -12.779 3.153 16.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.323 4.323
2 C -0.131 4.131
3 C 0.145 3.855
4 N -0.288 5.288
5 C -0.388 4.388
6 H 0.110 0.890
7 C -0.241 4.241
8 N -0.554 5.554
9 Si 0.775 3.225
10 H -0.181 1.181
11 H -0.242 1.242
12 H -0.213 1.213
13 C 0.021 3.979
14 H 0.117 0.883
15 C -0.164 4.164
16 C -0.018 4.018
17 N -0.350 5.350
18 C -0.032 4.032
19 C 0.365 3.635
20 F -0.169 7.169
21 F -0.165 7.165
22 F -0.184 7.184
23 C 0.291 3.709
24 O -0.450 6.450
25 H 0.226 0.774
26 H 0.098 0.902
27 H 0.094 0.906
28 H 0.053 0.947
29 H 0.118 0.882
30 H 0.134 0.866
31 H 0.140 0.860
32 H 0.078 0.922
33 H 0.191 0.809
34 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 8.586 -12.719 3.081 15.652
hybrid contribution -1.019 0.994 -1.842 2.328
sum 7.567 -11.724 1.239 14.009
Atomic orbital electron populations
1.24871 0.96489 1.03993 1.06935 1.24817 0.96421 0.97122 0.94718
1.17983 0.81891 0.91994 0.93651 1.44422 1.73239 1.01728 1.09431
1.19602 1.23424 1.07244 0.88572 0.89014 1.25607 0.96674 1.01449
1.00346 1.70337 1.20853 1.21697 1.42550 0.85539 0.78756 0.78653
0.79530 1.18092 1.24222 1.21308 1.21529 0.95608 0.83839 0.96901
0.88302 1.22982 0.95572 1.00530 0.97281 1.22457 0.79419 1.00757
0.99165 1.48263 1.10714 1.35177 1.40891 1.22687 1.06317 0.90861
0.83350 1.22024 0.74327 0.76507 0.90677 1.93160 1.50840 1.85580
1.87331 1.93154 1.89099 1.59335 1.74873 1.93248 1.63586 1.65711
1.95881 1.22769 0.87381 0.80313 0.80410 1.90613 1.16013 1.69694
1.68668 0.77430 0.90211 0.90642 0.94711 0.88179 0.86588 0.86026
0.92233 0.80928 0.86080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.30 -15.19 19.25 74.32 1.43 -13.76 16
2 C -0.13 -6.52 11.51 31.12 0.36 -6.16 16
3 C 0.27 12.30 5.37 84.57 0.45 12.75 16
4 N -0.57 -25.62 2.48 -688.55 -1.71 -27.32 16
5 C -0.26 -12.87 8.56 84.03 0.72 -12.15 16
6 H 0.09 4.32 5.06 -2.91 -0.01 4.31 16
7 C -0.04 -2.37 4.82 84.86 0.41 -1.96 16
8 N -0.91 -53.29 9.61 21.65 0.21 -53.08 16
9 Si 0.95 44.37 29.61 68.60 2.03 46.40 16
10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16
11 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16
12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
13 C 0.13 4.78 3.55 44.98 0.16 4.94 16
14 H 0.10 3.35 7.93 -2.39 -0.02 3.33 16
15 C -0.12 -2.99 6.43 31.65 0.20 -2.79 16
16 C 0.10 2.46 6.45 86.83 0.56 3.02 16
17 N -0.62 -18.95 2.81 -817.99 -2.29 -21.24 16
18 C 0.09 2.33 5.91 86.38 0.51 2.84 16
19 C 0.42 13.75 3.29 71.98 0.24 13.98 16
20 F -0.19 -6.36 17.09 44.97 0.77 -5.59 16
21 F -0.18 -5.31 17.32 44.97 0.78 -4.53 16
22 F -0.20 -9.14 16.96 44.97 0.76 -8.38 16
23 C 0.50 20.41 6.79 87.90 0.60 21.01 16
24 O -0.57 -28.82 17.60 -3.03 -0.05 -28.87 16
25 H 0.21 8.99 7.80 -4.43 -0.03 8.96 16
26 H 0.08 2.95 8.06 -2.39 -0.02 2.93 16
27 H 0.08 3.76 6.57 -2.39 -0.02 3.75 16
28 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16
29 H 0.10 2.47 8.04 -2.38 -0.02 2.45 16
30 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16
31 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16
32 H 0.06 1.71 6.22 -2.39 -0.01 1.70 16
33 H 0.17 2.32 8.14 -2.38 -0.02 2.30 16
34 H 0.12 3.03 7.93 -2.39 -0.02 3.01 16
Total: -1.00 -76.45 307.05 7.27 -69.18
By element:
Atomic # 1 Polarization: 10.57 SS G_CDS: 1.14 Total: 11.71 kcal
Atomic # 6 Polarization: 16.08 SS G_CDS: 5.64 Total: 21.72 kcal
Atomic # 7 Polarization: -97.85 SS G_CDS: -3.79 Total: -101.64 kcal
Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.87 kcal
Atomic # 9 Polarization: -20.81 SS G_CDS: 2.31 Total: -18.50 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal
Total: -76.45 7.27 -69.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281226939.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.093 kcal
(2) G-P(sol) polarization free energy of solvation -76.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.278 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds