Wall clock time and date at job start Tue Mar 31 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33874 * 122.76183 * 2 1 4 4 O 1.21225 * 125.39535 * 0.05149 * 3 2 1 5 5 C 1.51312 * 109.20431 * 180.02562 * 3 2 1 6 6 C 1.54219 * 103.55737 * 0.02562 * 5 3 2 7 7 H 1.09006 * 110.60773 * 241.32642 * 6 5 3 8 8 N 1.46503 * 110.60814 * 118.52044 * 6 5 3 9 9 S 1.65593 * 120.00413 * 145.00003 * 8 6 5 10 10 O 1.42106 * 104.27581 * 308.92613 * 9 8 6 11 11 O 1.42104 * 104.27905 * 181.06754 * 9 8 6 12 12 C 1.81399 * 104.45079 * 64.99825 * 9 8 6 13 13 C 1.52997 * 109.47147 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 12 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47216 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 119.99848 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99829 * 18 16 14 22 22 C 1.33877 * 122.75985 * 180.02562 * 2 1 3 23 23 O 1.21231 * 125.40087 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.47086 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47257 * 120.02018 * 1 2 3 26 26 H 1.08997 * 109.47103 * 240.01402 * 1 2 3 27 27 H 1.09008 * 110.60838 * 241.48406 * 5 3 2 28 28 H 1.09004 * 110.60372 * 118.52722 * 5 3 2 29 29 H 0.97006 * 119.99330 * 324.99817 * 8 6 5 30 30 H 1.09001 * 109.47190 * 60.00203 * 12 9 8 31 31 H 1.09004 * 109.47089 * 300.00070 * 12 9 8 32 32 H 1.09001 * 109.46832 * 60.00079 * 13 12 9 33 33 H 1.09000 * 109.47611 * 300.00376 * 13 12 9 34 34 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7385 2.2510 0.0009 5 6 3.6605 0.7711 -0.0006 6 6 3.6605 -0.7711 -0.0017 7 1 4.1503 -1.1554 0.8931 8 7 4.3149 -1.2860 -1.2071 9 16 5.2103 -2.6770 -1.1333 10 8 6.0980 -2.4649 -0.0441 11 8 5.7010 -2.8485 -2.4558 12 6 4.0045 -3.9706 -0.7291 13 6 4.7179 -5.3206 -0.6325 14 6 3.7163 -6.3952 -0.2961 15 1 2.6750 -6.1407 -0.1648 16 6 4.1293 -7.7031 -0.1560 17 7 5.3975 -8.0129 -0.3155 18 14 2.8876 -9.0352 0.2602 19 1 1.5371 -8.4309 0.3870 20 1 2.8748 -10.0548 -0.8193 21 1 3.2640 -9.6787 1.5445 22 6 2.1895 -1.1258 -0.0005 23 8 1.7385 -2.2511 -0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5142 -0.8898 26 1 -0.3633 -0.5136 0.8901 27 1 4.1480 1.1544 0.8958 28 1 4.1473 1.1551 -0.8972 29 1 4.2236 -0.8119 -2.0485 30 1 3.2453 -4.0163 -1.5099 31 1 3.5308 -3.7404 0.2253 32 1 5.4774 -5.2751 0.1480 33 1 5.1913 -5.5505 -1.5871 34 1 5.6880 -8.9332 -0.2172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283657708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:00 Heat of formation + Delta-G solvation = -134.365152 kcal Electronic energy + Delta-G solvation = -21519.905195 eV Core-core repulsion = 17966.586054 eV Total energy + Delta-G solvation = -3553.319141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23155 -38.94542 -36.78294 -36.40228 -35.66400 -35.47539 -33.86059 -31.46499 -31.13085 -27.28932 -25.97545 -25.57045 -22.66248 -21.67597 -20.08671 -19.41180 -17.92294 -17.73915 -17.19631 -16.90795 -16.44133 -15.81233 -15.48884 -15.15754 -14.85986 -14.56989 -14.52994 -14.29632 -13.62548 -13.37207 -13.13970 -12.89819 -12.50226 -12.38010 -11.77611 -11.75859 -11.72311 -11.64447 -11.56023 -11.06359 -10.92846 -10.62958 -10.37169 -10.30197 -10.10671 -9.88386 -9.55289 -9.09138 -8.47676 -6.09829 -4.14190 0.60344 1.13470 2.12862 2.27210 2.93099 3.27635 3.35000 3.39605 3.63861 3.77898 3.83863 4.13464 4.40313 4.52703 4.56870 4.82964 4.86691 5.00356 5.08685 5.18477 5.25809 5.33685 5.37084 5.72061 5.84116 6.39198 6.55725 6.67208 6.93773 7.32619 7.37311 7.40561 7.85434 8.21526 8.90254 9.50452 11.01353 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.004807 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.857743 B = 5823.539568 C = 6906.610299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.575 5.575 3 C 0.530 3.470 4 O -0.483 6.483 5 C -0.160 4.160 6 C 0.120 3.880 7 H 0.149 0.851 8 N -1.106 6.106 9 S 2.581 3.419 10 O -0.961 6.961 11 O -0.959 6.959 12 C -0.577 4.577 13 C 0.028 3.972 14 C -0.515 4.515 15 H 0.064 0.936 16 C 0.057 3.943 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.503 3.497 23 O -0.446 6.446 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.418 0.582 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 18.615 0.817 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.319 5.319 3 C 0.319 3.681 4 O -0.355 6.355 5 C -0.201 4.201 6 C 0.008 3.992 7 H 0.166 0.834 8 N -0.862 5.862 9 S 2.680 3.320 10 O -0.951 6.951 11 O -0.949 6.949 12 C -0.711 4.711 13 C -0.011 4.011 14 C -0.554 4.554 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.287 3.713 23 O -0.313 6.313 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.252 0.748 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.036 18.338 0.831 19.324 hybrid contribution -1.496 -0.751 -0.042 1.674 sum -7.532 17.587 0.789 19.149 Atomic orbital electron populations 1.21978 0.76865 1.04691 1.04043 1.46668 1.09867 1.09273 1.66119 1.20779 0.89954 0.83754 0.73581 1.90783 1.77717 1.21180 1.45834 1.22864 0.94086 0.94562 1.08632 1.21434 0.90246 0.95366 0.92162 0.83359 1.55978 1.69435 1.45224 1.15530 1.06110 0.76398 0.74886 0.74627 1.93552 1.61510 1.84056 1.55983 1.93574 1.78445 1.85087 1.37837 1.30421 1.14827 1.14254 1.11614 1.18989 0.96149 0.87169 0.98798 1.21058 0.94379 0.91534 1.48461 0.91814 1.25058 0.95433 0.98829 0.95194 1.69970 1.14674 1.19135 1.49301 0.86422 0.81352 0.81525 0.78057 1.19618 1.20857 1.20847 1.21560 0.90486 0.84255 0.74972 1.90897 1.77374 1.20549 1.42455 0.88878 0.90298 0.90215 0.84724 0.85065 0.74773 0.85855 0.85467 0.94841 0.94909 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.65 59.85 0.64 1.14 16 2 N -0.57 -5.25 2.95 -122.72 -0.36 -5.61 16 3 C 0.53 4.62 8.08 -11.09 -0.09 4.53 16 4 O -0.48 -5.50 17.23 5.61 0.10 -5.40 16 5 C -0.16 -1.00 6.79 -26.95 -0.18 -1.19 16 6 C 0.12 1.11 3.65 -68.14 -0.25 0.86 16 7 H 0.15 1.25 7.56 -51.93 -0.39 0.86 16 8 N -1.11 -11.97 5.38 -5.07 -0.03 -12.00 16 9 S 2.58 42.60 5.44 -107.50 -0.58 42.02 16 10 O -0.96 -17.97 17.44 -57.54 -1.00 -18.97 16 11 O -0.96 -18.66 18.08 -57.54 -1.04 -19.70 16 12 C -0.58 -11.05 5.13 37.16 0.19 -10.86 16 13 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 14 C -0.51 -14.33 9.11 -34.44 -0.31 -14.64 16 15 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.50 5.47 7.73 -11.09 -0.09 5.38 16 23 O -0.45 -6.44 15.48 5.60 0.09 -6.36 16 24 H 0.09 0.63 7.41 -51.93 -0.38 0.25 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.13 0.61 7.83 -51.93 -0.41 0.21 16 29 H 0.42 3.45 8.69 -34.47 -0.30 3.15 16 30 H 0.12 2.24 8.14 -51.92 -0.42 1.82 16 31 H 0.13 2.29 6.87 -51.92 -0.36 1.94 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -37.29 310.98 -6.68 -43.97 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -3.92 Total: -0.58 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.33 Total: -12.68 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.35 Total: -43.37 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -1.86 Total: -50.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 42.60 SS G_CDS: -0.58 Total: 42.02 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.29 -6.68 -43.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283657708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.399 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds