Wall clock time and date at job start Tue Mar 31 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33874 * 122.76183 * 2 1 4 4 O 1.21225 * 125.39535 * 0.05149 * 3 2 1 5 5 C 1.51312 * 109.20431 * 180.02562 * 3 2 1 6 6 C 1.54219 * 103.55737 * 0.02562 * 5 3 2 7 7 H 1.09006 * 110.60773 * 241.32642 * 6 5 3 8 8 N 1.46503 * 110.60814 * 118.52044 * 6 5 3 9 9 S 1.65593 * 120.00413 * 145.00003 * 8 6 5 10 10 O 1.42106 * 104.27581 * 308.92613 * 9 8 6 11 11 O 1.42104 * 104.27905 * 181.06754 * 9 8 6 12 12 C 1.81399 * 104.45079 * 64.99825 * 9 8 6 13 13 C 1.52997 * 109.47147 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 12 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47216 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 119.99848 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99829 * 18 16 14 22 22 C 1.33877 * 122.75985 * 180.02562 * 2 1 3 23 23 O 1.21231 * 125.40087 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.47086 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47257 * 120.02018 * 1 2 3 26 26 H 1.08997 * 109.47103 * 240.01402 * 1 2 3 27 27 H 1.09008 * 110.60838 * 241.48406 * 5 3 2 28 28 H 1.09004 * 110.60372 * 118.52722 * 5 3 2 29 29 H 0.97006 * 119.99330 * 324.99817 * 8 6 5 30 30 H 1.09001 * 109.47190 * 60.00203 * 12 9 8 31 31 H 1.09004 * 109.47089 * 300.00070 * 12 9 8 32 32 H 1.09001 * 109.46832 * 60.00079 * 13 12 9 33 33 H 1.09000 * 109.47611 * 300.00376 * 13 12 9 34 34 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7385 2.2510 0.0009 5 6 3.6605 0.7711 -0.0006 6 6 3.6605 -0.7711 -0.0017 7 1 4.1503 -1.1554 0.8931 8 7 4.3149 -1.2860 -1.2071 9 16 5.2103 -2.6770 -1.1333 10 8 6.0980 -2.4649 -0.0441 11 8 5.7010 -2.8485 -2.4558 12 6 4.0045 -3.9706 -0.7291 13 6 4.7179 -5.3206 -0.6325 14 6 3.7163 -6.3952 -0.2961 15 1 2.6750 -6.1407 -0.1648 16 6 4.1293 -7.7031 -0.1560 17 7 5.3975 -8.0129 -0.3155 18 14 2.8876 -9.0352 0.2602 19 1 1.5371 -8.4309 0.3870 20 1 2.8748 -10.0548 -0.8193 21 1 3.2640 -9.6787 1.5445 22 6 2.1895 -1.1258 -0.0005 23 8 1.7385 -2.2511 -0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5142 -0.8898 26 1 -0.3633 -0.5136 0.8901 27 1 4.1480 1.1544 0.8958 28 1 4.1473 1.1551 -0.8972 29 1 4.2236 -0.8119 -2.0485 30 1 3.2453 -4.0163 -1.5099 31 1 3.5308 -3.7404 0.2253 32 1 5.4774 -5.2751 0.1480 33 1 5.1913 -5.5505 -1.5871 34 1 5.6880 -8.9332 -0.2172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283657708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:59 Heat of formation + Delta-G solvation = -165.337115 kcal Electronic energy + Delta-G solvation = -21521.248240 eV Core-core repulsion = 17966.586054 eV Total energy + Delta-G solvation = -3554.662186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.081 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.00010 -39.80013 -38.22270 -37.33249 -37.04811 -36.38640 -35.86260 -33.09119 -32.24924 -27.93177 -27.56454 -26.77262 -23.64204 -23.33782 -20.91494 -20.58049 -19.24153 -18.74101 -18.37539 -18.02574 -17.64204 -16.99962 -16.91437 -16.52198 -16.07703 -15.96585 -15.35271 -15.08938 -15.04634 -14.46456 -14.43139 -13.89152 -13.69274 -13.49550 -13.25405 -13.19964 -13.04872 -12.94253 -12.82654 -12.75877 -12.53172 -12.21535 -12.07095 -11.73100 -11.40658 -11.04042 -10.88594 -10.63394 -10.55706 -8.24983 -6.37376 -0.77240 0.32412 1.36263 1.40292 1.40338 1.50042 1.54198 1.86822 2.38610 2.71692 2.94970 3.04527 3.08392 3.13179 3.31024 3.91482 3.96524 4.15617 4.23043 4.24807 4.39226 4.40707 4.70470 4.74329 4.78818 4.82341 5.31807 5.33834 5.66168 5.71482 5.88468 6.10879 6.17523 6.63735 6.75859 7.32187 8.87295 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.004807 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.857743 B = 5823.539568 C = 6906.610299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.574 5.574 3 C 0.535 3.465 4 O -0.508 6.508 5 C -0.145 4.145 6 C 0.113 3.887 7 H 0.161 0.839 8 N -1.085 6.085 9 S 2.624 3.376 10 O -0.978 6.978 11 O -0.987 6.987 12 C -0.585 4.585 13 C 0.022 3.978 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.275 1.275 22 C 0.505 3.495 23 O -0.487 6.487 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.434 0.566 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.013 0.987 33 H 0.009 0.991 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 20.183 1.168 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.318 5.318 3 C 0.326 3.674 4 O -0.382 6.382 5 C -0.185 4.185 6 C 0.001 3.999 7 H 0.178 0.822 8 N -0.846 5.846 9 S 2.720 3.280 10 O -0.968 6.968 11 O -0.977 6.977 12 C -0.716 4.716 13 C -0.017 4.017 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.201 1.201 22 C 0.291 3.709 23 O -0.357 6.357 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.185 0.815 28 H 0.174 0.826 29 H 0.273 0.727 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.811 19.912 1.174 21.077 hybrid contribution -1.301 -1.108 -0.149 1.716 sum -8.112 18.804 1.024 20.505 Atomic orbital electron populations 1.22106 0.76298 1.05337 1.04395 1.46739 1.10490 1.09106 1.65433 1.21131 0.90818 0.83023 0.72450 1.90787 1.78312 1.22026 1.47040 1.22969 0.92501 0.91633 1.11423 1.21752 0.88973 0.97670 0.91515 0.82198 1.55349 1.68957 1.43031 1.17305 1.04519 0.75406 0.74748 0.73294 1.93530 1.62050 1.84441 1.56793 1.93533 1.79055 1.85942 1.39218 1.30378 1.15743 1.12830 1.12698 1.18824 0.95794 0.90459 0.96630 1.21502 0.95031 0.92720 1.48204 0.91508 1.26024 0.97403 1.01488 0.94966 1.70092 1.16744 1.19891 1.50435 0.85329 0.78995 0.78317 0.78003 1.18621 1.20218 1.20096 1.21781 0.91286 0.83899 0.73931 1.90884 1.78168 1.22137 1.44540 0.88029 0.90120 0.89844 0.81505 0.82624 0.72731 0.85189 0.84486 0.96907 0.97317 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 10.65 127.77 1.36 2.19 16 2 N -0.57 -9.36 2.95 -780.02 -2.30 -11.66 16 3 C 0.53 7.81 8.08 87.99 0.71 8.52 16 4 O -0.51 -10.33 17.23 -2.86 -0.05 -10.38 16 5 C -0.14 -1.22 6.79 30.46 0.21 -1.01 16 6 C 0.11 1.74 3.65 44.85 0.16 1.91 16 7 H 0.16 2.22 7.56 -2.38 -0.02 2.20 16 8 N -1.09 -20.76 5.38 -169.95 -0.92 -21.67 16 9 S 2.62 84.24 5.44 -56.49 -0.31 83.94 16 10 O -0.98 -35.43 17.44 -127.65 -2.23 -37.66 16 11 O -0.99 -37.81 18.08 -127.65 -2.31 -40.11 16 12 C -0.58 -22.57 5.13 71.98 0.37 -22.20 16 13 C 0.02 1.14 4.98 29.85 0.15 1.29 16 14 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 15 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 18 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.51 10.10 7.73 87.99 0.68 10.78 16 23 O -0.49 -13.72 15.48 -2.88 -0.04 -13.76 16 24 H 0.10 1.24 7.41 -2.39 -0.02 1.23 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.17 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.16 0.68 7.83 -2.38 -0.02 0.66 16 29 H 0.43 5.80 8.69 -96.74 -0.84 4.96 16 30 H 0.13 4.76 8.14 -2.39 -0.02 4.74 16 31 H 0.14 4.95 6.87 -2.39 -0.02 4.93 16 32 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -81.75 310.98 -1.21 -82.96 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.30 Total: 6.74 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 4.33 Total: -28.26 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.93 Total: -89.67 kcal Atomic # 8 Polarization: -97.28 SS G_CDS: -4.63 Total: -101.91 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 84.24 SS G_CDS: -0.31 Total: 83.94 kcal Total: -81.75 -1.21 -82.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283657708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.378 kcal (2) G-P(sol) polarization free energy of solvation -81.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds