Wall clock time and date at job start Tue Mar 31 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46531 * 2 1 4 4 C 1.50703 * 109.47166 * 119.99718 * 2 1 3 5 5 O 1.21279 * 119.99434 * 92.40717 * 4 2 1 6 6 N 1.34766 * 120.00336 * 272.40842 * 4 2 1 7 7 C 1.46972 * 120.59441 * 5.24668 * 6 4 2 8 8 C 1.53809 * 108.39543 * 124.75967 * 7 6 4 9 9 N 1.46962 * 108.58088 * 49.64111 * 8 7 6 10 10 C 1.36935 * 120.59401 * 124.66939 * 9 8 7 11 11 H 1.08002 * 120.00300 * 329.23094 * 10 9 8 12 12 C 1.38813 * 120.00116 * 149.24269 * 10 9 8 13 13 N 1.31618 * 120.00147 * 160.78323 * 12 10 9 14 14 Si 1.86807 * 119.99916 * 340.78057 * 12 10 9 15 15 H 1.48501 * 109.46665 * 92.97742 * 14 12 10 16 16 H 1.48497 * 109.47115 * 212.97910 * 14 12 10 17 17 H 1.48503 * 109.46909 * 332.97769 * 14 12 10 18 18 C 1.46971 * 118.81099 * 304.64214 * 9 8 7 19 19 C 1.46962 * 120.59557 * 185.53001 * 6 4 2 20 20 C 1.50691 * 109.46991 * 240.00182 * 2 1 3 21 21 C 1.38225 * 119.61857 * 325.01936 * 20 2 1 22 22 C 1.38636 * 119.16253 * 179.97438 * 21 20 2 23 23 C 1.38669 * 118.42051 * 0.02562 * 22 21 20 24 24 C 1.38182 * 119.16156 * 359.97438 * 23 22 21 25 25 N 1.31856 * 119.61895 * 145.00081 * 20 2 1 26 26 H 1.08994 * 109.47023 * 66.14776 * 1 2 3 27 27 H 1.08998 * 109.46898 * 186.15656 * 1 2 3 28 28 H 1.09006 * 109.46724 * 306.14930 * 1 2 3 29 29 H 1.09000 * 109.61177 * 244.54380 * 7 6 4 30 30 H 1.09002 * 109.60789 * 5.05442 * 7 6 4 31 31 H 1.09003 * 109.74585 * 289.84644 * 8 7 6 32 32 H 1.09001 * 109.53250 * 169.30956 * 8 7 6 33 33 H 0.96997 * 119.99976 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.60835 * 295.48423 * 18 9 8 35 35 H 1.09002 * 109.74823 * 175.05154 * 18 9 8 36 36 H 1.09001 * 109.61166 * 354.94975 * 19 6 4 37 37 H 1.09002 * 109.60838 * 115.45946 * 19 6 4 38 38 H 1.08001 * 120.42049 * 0.02562 * 21 20 2 39 39 H 1.08000 * 120.79025 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.41753 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.61646 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2761 -1.8977 1.1881 6 7 2.2108 -0.0263 2.3779 7 6 1.8123 1.3848 2.4772 8 6 0.8511 1.5350 3.6686 9 7 1.4534 0.8850 4.8410 10 6 1.6346 1.5801 6.0068 11 1 1.8208 2.6436 5.9782 12 6 1.5793 0.9178 7.2255 13 7 2.1114 1.4661 8.2972 14 14 0.7497 -0.7517 7.3445 15 1 1.7629 -1.8219 7.1624 16 1 0.1133 -0.8942 8.6786 17 1 -0.2866 -0.8659 6.2869 18 6 1.8571 -0.5245 4.7400 19 6 2.8131 -0.6763 3.5503 20 6 2.0324 -0.7103 -1.2304 21 6 1.3318 -1.7930 -1.7280 22 6 1.8021 -2.4392 -2.8608 23 6 2.9650 -1.9704 -3.4531 24 6 3.6115 -0.8822 -2.8989 25 7 3.1348 -0.2917 -1.8202 26 1 -0.3633 0.4155 -0.9398 27 1 -0.3633 -1.0217 0.1102 28 1 -0.3633 0.6063 0.8299 29 1 2.6951 2.0041 2.6356 30 1 1.3094 1.6884 1.5589 31 1 -0.1015 1.0592 3.4355 32 1 0.6927 2.5930 3.8779 33 1 2.0724 1.0035 9.1489 34 1 0.9762 -1.1470 4.5831 35 1 2.3622 -0.8295 5.6564 36 1 2.9715 -1.7343 3.3410 37 1 3.7656 -0.2004 3.7834 38 1 0.4290 -2.1309 -1.2409 39 1 1.2753 -3.2875 -3.2722 40 1 3.3603 -2.4497 -4.3364 41 1 4.5175 -0.5107 -3.3544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330447088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:31 Heat of formation + Delta-G solvation = 13.989087 kcal Electronic energy + Delta-G solvation = -23340.875196 eV Core-core repulsion = 20027.930078 eV Total energy + Delta-G solvation = -3312.945119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79849 -40.63728 -38.65346 -35.83757 -35.30446 -33.47525 -33.39418 -32.31659 -30.64290 -28.95896 -26.28295 -25.34661 -24.90401 -24.27590 -23.26702 -22.08267 -20.09175 -18.87610 -18.19285 -17.92872 -17.24248 -17.03831 -16.85599 -16.28925 -16.03276 -15.96853 -15.53658 -15.14841 -14.86554 -14.66563 -14.48037 -14.26845 -14.06050 -13.91036 -13.58822 -13.23915 -13.16708 -12.77408 -12.51530 -12.44790 -12.39330 -12.26163 -12.00747 -11.87342 -11.63446 -11.00006 -10.83625 -10.66775 -10.40124 -9.93446 -9.88664 -8.85071 -8.19891 -5.55649 0.14941 0.38561 1.28166 1.38810 1.46964 1.53330 1.91842 2.38304 2.85103 3.03186 3.18291 3.28154 3.49264 3.77454 3.98973 4.05066 4.07082 4.12728 4.14418 4.26659 4.28964 4.32561 4.37885 4.51855 4.54115 4.64856 4.68742 4.74723 4.81792 4.85785 4.90430 4.92256 5.11721 5.20679 5.25080 5.31642 5.44649 5.80010 5.84755 6.11372 6.40846 6.85829 7.03643 7.07266 7.55876 7.98478 8.99595 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035235 B = 0.003877 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.476957 B = 7220.288187 C = 7368.998738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 H 0.121 0.879 4 C 0.522 3.478 5 O -0.583 6.583 6 N -0.601 5.601 7 C 0.093 3.907 8 C 0.129 3.871 9 N -0.618 5.618 10 C -0.248 4.248 11 H 0.062 0.938 12 C -0.026 4.026 13 N -0.952 5.952 14 Si 0.938 3.062 15 H -0.278 1.278 16 H -0.308 1.308 17 H -0.265 1.265 18 C 0.117 3.883 19 C 0.105 3.895 20 C 0.125 3.875 21 C -0.159 4.159 22 C -0.081 4.081 23 C -0.170 4.170 24 C 0.081 3.919 25 N -0.513 5.513 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.262 0.738 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -4.620 -25.536 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 H 0.139 0.861 4 C 0.311 3.689 5 O -0.464 6.464 6 N -0.333 5.333 7 C -0.030 4.030 8 C 0.004 3.996 9 N -0.343 5.343 10 C -0.378 4.378 11 H 0.079 0.921 12 C -0.222 4.222 13 N -0.598 5.598 14 Si 0.768 3.232 15 H -0.205 1.205 16 H -0.237 1.237 17 H -0.189 1.189 18 C -0.009 4.009 19 C -0.019 4.019 20 C -0.012 4.012 21 C -0.179 4.179 22 C -0.107 4.107 23 C -0.190 4.190 24 C -0.075 4.075 25 N -0.222 5.222 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.304 -4.500 -25.041 25.547 hybrid contribution -0.438 -1.424 0.739 1.663 sum -2.742 -5.923 -24.302 25.164 Atomic orbital electron populations 1.21869 0.89213 1.03565 1.04924 1.20204 0.99327 1.00588 0.87742 0.86130 1.20888 0.76740 0.86782 0.84486 1.90635 1.53642 1.16899 1.85185 1.48076 1.60670 1.13211 1.11341 1.22597 0.99761 0.79984 1.00674 1.21641 0.93954 0.98440 0.85596 1.44404 1.70807 1.08395 1.10704 1.18870 1.41890 0.93651 0.83367 0.92079 1.25906 0.99877 1.01263 0.95133 1.69933 1.47334 1.41571 1.00933 0.86015 0.79817 0.81518 0.75896 1.20526 1.23657 1.18930 1.21622 0.96071 0.86254 0.96946 1.21942 0.96242 0.98483 0.85281 1.20668 0.91462 0.94222 0.94884 1.22132 1.02153 0.96080 0.97526 1.22004 0.95733 0.99005 0.93954 1.22511 0.96297 0.97774 1.02379 1.23207 0.99798 0.93244 0.91288 1.67374 1.12262 1.32183 1.10418 0.88789 0.91966 0.89957 0.91083 0.86070 0.94035 0.89738 0.92850 0.95267 0.92065 0.89894 0.91451 0.84116 0.81981 0.81523 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.26 71.99 0.59 -1.84 16 2 C -0.06 -1.36 2.18 -12.29 -0.03 -1.38 16 3 H 0.12 2.58 6.57 -2.39 -0.02 2.57 16 4 C 0.52 16.80 6.76 87.66 0.59 17.39 16 5 O -0.58 -22.79 15.51 -3.03 -0.05 -22.83 16 6 N -0.60 -19.84 2.94 -817.15 -2.40 -22.24 16 7 C 0.09 2.60 6.30 86.56 0.55 3.15 16 8 C 0.13 4.41 6.69 86.56 0.58 4.99 16 9 N -0.62 -27.96 2.69 -697.33 -1.88 -29.84 16 10 C -0.25 -13.54 10.01 84.03 0.84 -12.70 16 11 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 12 C -0.03 -1.50 5.23 84.86 0.44 -1.06 16 13 N -0.95 -58.83 13.97 21.65 0.30 -58.53 16 14 Si 0.94 46.37 24.40 68.60 1.67 48.04 16 15 H -0.28 -13.23 6.67 99.48 0.66 -12.57 16 16 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 17 H -0.26 -12.66 6.69 99.48 0.67 -11.99 16 18 C 0.12 5.06 4.37 86.41 0.38 5.44 16 19 C 0.11 3.98 6.60 86.42 0.57 4.55 16 20 C 0.13 3.17 5.31 42.55 0.23 3.39 16 21 C -0.16 -3.45 8.91 22.36 0.20 -3.25 16 22 C -0.08 -1.36 10.18 22.47 0.23 -1.13 16 23 C -0.17 -2.62 10.11 22.36 0.23 -2.39 16 24 C 0.08 1.60 11.18 84.67 0.95 2.54 16 25 N -0.51 -13.39 10.27 -183.89 -1.89 -15.28 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.17 6.84 -2.39 -0.02 1.15 16 28 H 0.08 1.33 7.33 -2.38 -0.02 1.31 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.12 2.39 4.86 -2.39 -0.01 2.38 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.77 7.93 -2.39 -0.02 2.75 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.03 1.27 7.15 -2.39 -0.02 1.26 16 35 H 0.06 2.89 4.71 -2.39 -0.01 2.88 16 36 H 0.08 3.15 6.99 -2.39 -0.02 3.13 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.14 2.75 6.46 -2.91 -0.02 2.73 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -74.48 324.27 3.05 -71.43 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.95 Total: 11.55 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.34 Total: 17.70 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -5.87 Total: -125.88 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.67 Total: 48.04 kcal Total: -74.48 3.05 -71.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330447088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.418 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds