Wall clock time and date at job start Tue Mar 31 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47087 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47148 * 180.02562 * 16 15 13 18 18 C 1.38651 * 120.78510 * 269.72024 * 17 16 15 19 19 C 1.38201 * 119.16129 * 179.79963 * 18 17 16 20 20 N 1.31871 * 120.76365 * 0.48030 * 19 18 17 21 21 C 1.31873 * 121.72594 * 359.74599 * 20 19 18 22 22 C 1.38201 * 120.76398 * 0.02562 * 21 20 19 23 23 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 24 24 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 25 25 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 27 27 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 28 28 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 29 29 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 30 30 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 31 31 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 32 32 H 1.08998 * 109.46844 * 299.99963 * 16 15 13 33 33 H 1.08994 * 109.47046 * 59.99876 * 16 15 13 34 34 H 1.07998 * 120.41794 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.62546 * 180.20787 * 19 18 17 36 36 H 1.07996 * 119.61899 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.42308 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.61476 * 295.47839 * 23 12 11 39 39 H 1.09010 * 109.61052 * 174.96625 * 23 12 11 40 40 H 1.09003 * 109.61422 * 354.94072 * 24 9 7 41 41 H 1.08999 * 109.61487 * 115.28316 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0723 -8.1641 2.2206 17 6 0.3891 -9.4808 1.6509 18 6 -0.1446 -9.9681 0.4676 19 6 0.3061 -11.1774 -0.0267 20 7 1.2250 -11.8694 0.6181 21 6 1.7514 -11.4390 1.7481 22 6 1.3533 -10.2363 2.3004 23 6 0.5344 -3.2876 2.4474 24 6 0.2343 -2.3368 1.2819 25 1 -0.4850 0.8401 -0.0004 26 1 1.0134 -4.0707 -0.8208 27 1 2.7052 -3.5085 -0.8012 28 1 3.0125 -4.2759 1.4845 29 1 2.2517 -5.6159 0.5906 30 1 0.7252 -7.0092 0.5866 31 1 1.8423 -7.2118 1.9575 32 1 0.0068 -8.1911 3.3073 33 1 -1.1097 -7.9883 1.9361 34 1 -0.9004 -9.4080 -0.0629 35 1 -0.1020 -11.5624 -0.9495 36 1 2.5016 -12.0336 2.2480 37 1 1.7877 -9.8893 3.2263 38 1 1.3246 -2.8665 3.0689 39 1 -0.3666 -3.4306 3.0440 40 1 0.0946 -1.3248 1.6621 41 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330799332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:53 Heat of formation + Delta-G solvation = 21.557499 kcal Electronic energy + Delta-G solvation = -22487.310904 eV Core-core repulsion = 19174.693977 eV Total energy + Delta-G solvation = -3312.616928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43825 -39.61510 -36.92675 -34.89668 -33.93993 -31.41119 -31.29883 -31.14802 -29.92792 -27.10562 -25.33514 -23.66733 -23.61096 -22.79185 -21.72702 -20.37490 -18.55930 -17.45022 -16.67502 -16.60790 -16.06911 -15.71864 -15.46484 -15.32021 -14.81889 -14.13110 -14.00028 -13.74245 -13.69506 -13.45525 -13.29031 -13.21461 -12.61032 -12.33299 -12.16038 -11.89695 -11.72868 -11.25219 -11.11038 -10.84053 -10.77708 -10.62509 -10.29105 -10.02020 -9.91031 -9.79036 -9.69783 -9.37615 -9.35282 -8.62687 -8.28488 -6.75811 -5.88669 -3.34455 0.91586 1.02185 2.92667 3.32497 3.36176 3.39132 3.40615 3.62303 4.24425 4.36601 4.42271 4.53909 4.83027 4.91420 4.93156 5.00247 5.03860 5.20267 5.28679 5.38128 5.48897 5.52480 5.67166 5.69907 5.72076 5.79931 5.84265 5.97776 6.10385 6.20218 6.29400 6.34070 6.45463 6.49217 6.64523 6.82005 7.21330 7.50348 7.68311 7.75218 7.86634 8.32365 8.50860 9.07989 9.70641 10.27277 11.18754 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034674 B = 0.003017 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.334377 B = 9279.416195 C = 9578.595169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.088 3.912 12 N -0.596 5.596 13 C 0.508 3.492 14 O -0.557 6.557 15 C -0.131 4.131 16 C -0.068 4.068 17 C -0.034 4.034 18 C -0.169 4.169 19 C 0.098 3.902 20 N -0.493 5.493 21 C 0.097 3.903 22 C -0.171 4.171 23 C 0.087 3.913 24 C 0.159 3.841 25 H 0.257 0.743 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -18.163 2.858 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.328 5.328 13 C 0.296 3.704 14 O -0.437 6.437 15 C -0.172 4.172 16 C -0.105 4.105 17 C -0.042 4.042 18 C -0.189 4.189 19 C -0.058 4.058 20 N -0.202 5.202 21 C -0.059 4.059 22 C -0.191 4.191 23 C -0.037 4.037 24 C 0.032 3.968 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.152 0.848 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.487 -18.752 2.893 19.136 hybrid contribution 0.224 1.758 0.197 1.783 sum 2.711 -16.993 3.090 17.484 Atomic orbital electron populations 1.70014 1.05342 1.25935 1.53155 1.25097 0.95301 0.98621 1.00446 0.86329 0.78905 0.83083 0.78186 1.20805 1.21560 1.20911 1.19149 0.92716 0.84675 1.42398 0.91492 1.44009 1.36557 1.01600 1.49229 1.21361 0.98433 0.87452 0.92447 1.22479 0.88432 1.00324 0.92458 1.48090 1.32516 1.07013 1.45211 1.20488 0.82869 0.85493 0.81576 1.90653 1.29065 1.87033 1.36951 1.21614 1.01067 0.92167 1.02310 1.20397 1.00211 0.88672 1.01264 1.20419 0.93967 0.95888 0.93903 1.22137 1.01973 0.97910 0.96905 1.22768 0.92843 0.91399 0.98804 1.67676 1.09725 1.34450 1.08358 1.22752 0.97556 0.93806 0.91800 1.22105 0.98779 0.96375 1.01798 1.22510 0.99815 0.82881 0.98478 1.21187 0.88987 0.98622 0.87991 0.93348 0.95881 0.91460 0.91535 0.90930 0.88811 0.89045 0.89720 0.89603 0.84625 0.82800 0.82868 0.84753 0.92204 0.90131 0.88265 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 3 Si 0.91 21.01 29.59 -169.99 -5.03 15.98 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.83 9.57 -15.06 -0.14 -6.97 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.18 2.96 -171.77 -0.51 -14.69 16 10 C 0.13 2.51 6.70 -3.37 -0.02 2.48 16 11 C 0.09 1.36 6.52 -3.37 -0.02 1.34 16 12 N -0.60 -10.40 2.95 -172.21 -0.51 -10.91 16 13 C 0.51 8.28 7.70 -10.98 -0.08 8.20 16 14 O -0.56 -10.83 15.39 5.56 0.09 -10.74 16 15 C -0.13 -1.52 4.02 -27.88 -0.11 -1.63 16 16 C -0.07 -0.73 4.68 -27.88 -0.13 -0.86 16 17 C -0.03 -0.33 5.17 -104.32 -0.54 -0.87 16 18 C -0.17 -1.56 9.82 -39.44 -0.39 -1.95 16 19 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 20 N -0.49 -5.33 10.36 -13.25 -0.14 -5.46 16 21 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 22 C -0.17 -1.52 9.82 -39.44 -0.39 -1.91 16 23 C 0.09 1.71 6.59 -3.60 -0.02 1.69 16 24 C 0.16 3.72 5.51 -3.59 -0.02 3.70 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.87 5.91 -51.93 -0.31 0.56 16 30 H 0.09 1.01 7.72 -51.93 -0.40 0.61 16 31 H 0.09 0.91 7.91 -51.92 -0.41 0.50 16 32 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 33 H 0.09 0.99 8.06 -51.93 -0.42 0.57 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.60 6.99 -51.92 -0.36 1.24 16 40 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -31.78 336.73 -8.73 -40.51 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.97 Total: 0.43 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.35 Total: 4.70 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.53 Total: -55.94 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.78 -8.73 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330799332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.063 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds