Wall clock time and date at job start Tue Mar 31 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86796 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47134 * 270.00231 * 3 2 1 5 5 H 1.48499 * 109.47163 * 30.00372 * 3 2 1 6 6 H 1.48500 * 109.47150 * 149.99996 * 3 2 1 7 7 C 1.40047 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99846 * 359.97438 * 7 2 1 10 10 O 1.21695 * 120.00069 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99877 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99929 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47224 * 180.02562 * 12 11 9 14 14 S 1.81404 * 109.47322 * 180.02562 * 13 12 11 15 15 O 1.42101 * 110.53753 * 68.37639 * 14 13 12 16 16 O 1.42093 * 110.54150 * 291.62996 * 14 13 12 17 17 N 1.65592 * 104.44780 * 180.02562 * 14 13 12 18 18 C 1.46504 * 119.99935 * 65.00453 * 17 14 13 19 19 C 1.53003 * 109.46983 * 164.99556 * 18 17 14 20 20 C 1.53786 * 113.61503 * 85.86203 * 19 18 17 21 21 C 1.54049 * 86.98426 * 140.01654 * 20 19 18 22 22 C 1.53781 * 113.61337 * 183.46996 * 19 18 17 23 23 H 0.97000 * 119.99773 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00118 * 0.02562 * 11 9 7 25 25 H 1.09009 * 109.46786 * 60.00628 * 12 11 9 26 26 H 1.08997 * 109.47618 * 300.00572 * 12 11 9 27 27 H 1.09002 * 109.46945 * 60.00153 * 13 12 11 28 28 H 1.08997 * 109.47203 * 300.00719 * 13 12 11 29 29 H 0.97001 * 120.00075 * 244.99664 * 17 14 13 30 30 H 1.09000 * 109.47232 * 44.99593 * 18 17 14 31 31 H 1.08997 * 109.47041 * 284.99409 * 18 17 14 32 32 H 1.09002 * 112.85017 * 314.66585 * 19 18 17 33 33 H 1.08992 * 113.61675 * 254.61398 * 20 19 18 34 34 H 1.09000 * 113.60973 * 25.51686 * 20 19 18 35 35 H 1.09005 * 113.62125 * 220.02158 * 21 20 19 36 36 H 1.09003 * 113.61268 * 89.11946 * 21 20 19 37 37 H 1.08999 * 113.61567 * 334.48261 * 22 19 18 38 38 H 1.09000 * 113.61379 * 105.30384 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.2107 -6.0794 0.0005 14 16 1.3037 -7.6504 0.0005 15 8 0.6302 -7.8371 -1.2368 16 8 0.6293 -7.8367 1.2372 17 7 2.4859 -8.8099 0.0018 18 6 3.3834 -8.9397 1.1524 19 6 4.1145 -10.2818 1.0801 20 6 5.3931 -10.2417 0.2267 21 6 6.0385 -11.1420 1.2972 22 6 5.0224 -10.5547 2.2910 23 1 -0.4850 0.8401 -0.0004 24 1 2.9190 -3.6477 -0.0002 25 1 0.5896 -4.9743 -0.8898 26 1 0.5901 -4.9740 0.8902 27 1 2.8374 -6.0212 0.8905 28 1 2.8375 -6.0220 -0.8894 29 1 2.5841 -9.4033 -0.7592 30 1 2.8026 -8.8915 2.0735 31 1 4.1112 -8.1284 1.1389 32 1 3.4520 -11.1120 0.8353 33 1 5.2852 -10.7243 -0.7446 34 1 5.8429 -9.2510 0.1605 35 1 7.0721 -10.8797 1.5233 36 1 5.9020 -12.2075 1.1117 37 1 5.3711 -9.6495 2.7881 38 1 4.6147 -11.2889 2.9858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332057071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:01 Heat of formation + Delta-G solvation = -101.751249 kcal Electronic energy + Delta-G solvation = -20734.824439 eV Core-core repulsion = 17318.752638 eV Total energy + Delta-G solvation = -3416.071802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.38604 -37.45961 -37.08576 -35.94733 -34.89576 -34.16826 -32.43086 -30.06971 -28.03488 -26.31750 -25.98711 -23.15925 -23.01064 -20.00649 -19.87812 -19.29393 -17.66739 -17.40573 -16.85911 -16.14548 -15.84203 -15.37382 -15.18159 -14.87127 -14.58855 -14.30111 -14.08207 -13.91312 -12.84319 -12.61644 -12.54037 -12.50859 -12.41487 -12.09903 -12.03014 -11.91033 -11.80796 -11.30851 -11.27856 -10.97839 -10.91552 -10.88182 -10.70067 -10.55386 -10.47827 -10.25912 -9.69407 -8.89357 -7.69167 -7.65498 -6.22965 -4.69571 0.20809 2.65359 3.11972 3.18536 3.22010 3.71121 4.07651 4.14697 4.17833 4.21449 4.32314 4.46616 4.53525 4.61875 4.83048 4.87263 4.91718 5.00426 5.21240 5.34729 5.37597 5.41932 5.50370 5.53442 5.55565 5.68742 5.70642 5.85978 6.08770 6.15839 6.16367 6.75775 7.39080 7.81732 7.95367 8.25603 8.97502 9.43330 10.54100 10.71902 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.003077 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.554161 B = 9097.281643 C = 9890.788574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.551 3.449 10 O -0.578 6.578 11 N -0.761 5.761 12 C 0.144 3.856 13 C -0.637 4.637 14 S 2.618 3.382 15 O -0.956 6.956 16 O -0.953 6.953 17 N -1.120 6.120 18 C 0.121 3.879 19 C -0.118 4.118 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.135 4.135 23 H 0.270 0.730 24 H 0.383 0.617 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.416 0.584 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.392 -20.172 1.862 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.356 3.644 10 O -0.460 6.460 11 N -0.419 5.419 12 C 0.017 3.983 13 C -0.767 4.767 14 S 2.710 3.290 15 O -0.946 6.946 16 O -0.943 6.943 17 N -0.880 5.880 18 C -0.005 4.005 19 C -0.138 4.138 20 C -0.177 4.177 21 C -0.181 4.181 22 C -0.173 4.173 23 H 0.080 0.920 24 H 0.215 0.785 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.336 -20.101 2.037 23.167 hybrid contribution 1.719 0.860 -0.356 1.955 sum 13.055 -19.241 1.680 23.312 Atomic orbital electron populations 1.70023 1.07092 1.27441 1.34906 1.25733 0.94664 1.00390 0.92624 0.86327 0.80064 0.81231 0.78836 1.19716 1.20403 1.18923 1.20846 0.93578 0.89166 1.54532 0.91311 1.18317 0.87313 0.82328 0.76481 1.90620 1.14036 1.86632 1.54725 1.46121 1.08540 1.04012 1.83196 1.20489 0.92334 0.83238 1.02226 1.30855 1.14152 1.19997 1.11679 1.04783 0.74077 0.75779 0.74354 1.93610 1.71048 1.84742 1.45168 1.93598 1.70637 1.84335 1.45718 1.55644 1.53163 1.51239 1.27926 1.21396 0.92690 0.97840 0.88611 1.22779 0.95693 0.97283 0.98031 1.23077 0.96118 1.00626 0.97846 1.22853 0.98849 0.99502 0.96877 1.22916 0.96700 1.01529 0.96154 0.91960 0.78514 0.91791 0.91789 0.84879 0.84622 0.74961 0.89910 0.91563 0.88363 0.91353 0.89710 0.91335 0.90226 0.89623 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.83 55.55 0.66 -22.41 16 2 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.54 -15.28 9.54 -35.63 -0.34 -15.62 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.78 7.75 -12.99 -0.10 15.68 16 10 O -0.58 -18.97 15.02 5.19 0.08 -18.89 16 11 N -0.76 -16.81 5.55 -61.72 -0.34 -17.15 16 12 C 0.14 2.75 5.68 -4.04 -0.02 2.73 16 13 C -0.64 -7.88 6.19 37.16 0.23 -7.65 16 14 S 2.62 33.17 5.46 -107.50 -0.59 32.58 16 15 O -0.96 -15.31 18.08 -57.54 -1.04 -16.35 16 16 O -0.95 -15.29 17.49 -57.54 -1.01 -16.29 16 17 N -1.12 -9.62 5.89 -10.61 -0.06 -9.68 16 18 C 0.12 0.89 5.96 -4.04 -0.02 0.87 16 19 C -0.12 -0.73 3.77 -89.80 -0.34 -1.06 16 20 C -0.14 -0.77 7.65 -25.77 -0.20 -0.97 16 21 C -0.14 -0.75 8.09 -25.78 -0.21 -0.96 16 22 C -0.13 -0.75 7.64 -25.92 -0.20 -0.95 16 23 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 24 H 0.38 7.11 8.45 -40.82 -0.35 6.76 16 25 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.13 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.42 2.91 8.62 -34.46 -0.30 2.62 16 30 H 0.08 0.67 7.69 -51.93 -0.40 0.27 16 31 H 0.07 0.39 7.88 -51.93 -0.41 -0.02 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -39.28 336.04 -9.19 -48.47 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.63 Total: 5.35 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.30 Total: -5.64 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.25 Total: -49.25 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -1.97 Total: -51.54 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 33.17 SS G_CDS: -0.59 Total: 32.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -39.28 -9.19 -48.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332057071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.278 kcal (2) G-P(sol) polarization free energy of solvation -39.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds