Wall clock time and date at job start Tue Mar 31 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48504 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46816 * 299.99691 * 3 2 1 6 6 H 1.48498 * 109.47245 * 59.99671 * 3 2 1 7 7 C 1.38952 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99607 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00605 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00642 * 179.97438 * 9 7 2 11 11 O 1.21301 * 119.99499 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00453 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47173 * 180.02562 * 12 10 9 14 14 C 1.35476 * 127.82561 * 95.98352 * 13 12 10 15 15 O 1.21610 * 126.88375 * 359.73421 * 14 13 12 16 16 O 1.34255 * 106.24112 * 179.73725 * 14 13 12 17 17 N 1.21005 * 110.88596 * 0.02562 * 16 14 13 18 18 C 1.29852 * 111.56100 * 0.02562 * 17 16 14 19 19 C 1.48181 * 126.51994 * 180.02562 * 18 17 16 20 20 C 1.39812 * 120.91683 * 7.57949 * 19 18 17 21 21 C 1.38030 * 119.01440 * 179.73157 * 20 19 18 22 22 N 1.31888 * 120.89034 * 0.55720 * 21 20 19 23 23 C 1.31887 * 122.02450 * 359.71266 * 22 21 20 24 24 C 1.38040 * 120.88950 * 0.02562 * 23 22 21 25 25 H 0.97000 * 119.99376 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99370 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46776 * 60.00036 * 12 10 9 28 28 H 1.09003 * 109.47184 * 299.99876 * 12 10 9 29 29 H 1.08011 * 120.49204 * 359.97438 * 20 19 18 30 30 H 1.08009 * 119.55881 * 180.27189 * 21 20 19 31 31 H 1.08003 * 119.55434 * 180.02562 * 23 22 21 32 32 H 1.07998 * 120.48972 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8895 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 2.6506 -6.6800 1.0662 15 8 2.3527 -6.5123 2.2333 16 8 3.4965 -7.5995 0.5748 17 7 3.5807 -7.5087 -0.6289 18 6 2.8319 -6.5527 -1.0888 19 6 2.6833 -6.1541 -2.5083 20 6 3.2561 -6.9151 -3.5318 21 6 3.0885 -6.5107 -4.8408 22 7 2.4090 -5.4180 -5.1302 23 6 1.8576 -4.6691 -4.1951 24 6 1.9718 -5.0033 -2.8606 25 1 -0.4849 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6166 -4.9208 -0.8886 28 1 0.6173 -4.9205 0.8914 29 1 3.8181 -7.8084 -3.3018 30 1 3.5235 -7.0945 -5.6387 31 1 1.3093 -3.7824 -4.4772 32 1 1.5180 -4.3852 -2.1001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343949708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:51 Heat of formation + Delta-G solvation = 36.798434 kcal Electronic energy + Delta-G solvation = -22726.687374 eV Core-core repulsion = 19077.639243 eV Total energy + Delta-G solvation = -3649.048131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.22668 -40.30540 -39.02971 -38.03669 -36.55824 -34.25567 -33.31838 -31.84825 -31.48760 -31.00796 -29.05379 -25.62095 -25.05469 -23.78765 -23.15625 -21.91210 -19.98186 -18.50437 -18.41386 -18.06829 -17.16733 -16.64364 -16.33517 -16.22262 -15.78181 -15.52576 -14.79774 -14.42772 -14.16174 -14.08368 -13.83612 -13.65656 -13.55201 -13.04688 -12.77779 -12.22688 -12.01237 -11.75570 -11.69976 -11.24527 -10.55540 -10.52726 -10.44566 -10.16970 -9.80639 -9.72393 -9.34966 -9.04397 -8.57524 -8.28218 -6.67920 -4.09977 0.39232 0.95425 1.69657 2.02654 2.28484 2.98117 3.15185 3.20165 3.21651 3.43336 3.65100 3.82215 3.95134 4.26142 4.29718 4.51021 4.62760 4.74777 4.81895 4.96030 5.06135 5.13084 5.40609 5.53716 5.61620 5.65105 5.78154 5.94837 6.03213 6.43303 7.32060 7.45882 7.73417 7.76309 8.10787 8.25072 8.88567 9.16317 9.64335 10.48289 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.005760 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.392647 B = 4860.196069 C = 6309.223440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.542 5.542 10 C 0.407 3.593 11 O -0.578 6.578 12 C 0.112 3.888 13 N -0.522 5.522 14 C 0.570 3.430 15 O -0.475 6.475 16 O -0.001 6.001 17 N -0.328 5.328 18 C 0.284 3.716 19 C 0.021 3.979 20 C -0.131 4.131 21 C 0.100 3.900 22 N -0.473 5.473 23 C 0.111 3.889 24 C -0.142 4.142 25 H 0.276 0.724 26 H 0.395 0.605 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -10.968 -7.960 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.178 5.178 10 C 0.191 3.809 11 O -0.463 6.463 12 C -0.011 4.011 13 N -0.258 5.258 14 C 0.321 3.679 15 O -0.355 6.355 16 O -0.044 6.044 17 N -0.063 5.063 18 C 0.017 3.983 19 C 0.011 3.989 20 C -0.153 4.153 21 C -0.057 4.057 22 N -0.182 5.182 23 C -0.046 4.046 24 C -0.164 4.164 25 H 0.086 0.914 26 H 0.229 0.771 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.166 0.834 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.202 -11.258 -8.320 14.000 hybrid contribution -0.576 1.304 1.380 1.984 sum -0.374 -9.954 -6.940 12.141 Atomic orbital electron populations 1.69602 1.06017 1.28742 1.48681 1.25327 0.95687 0.99989 0.96365 0.85752 0.79790 0.80597 0.78003 1.19067 1.20404 1.20451 1.19780 0.93549 0.81659 1.48368 0.87544 1.41796 1.09373 1.04306 1.62281 1.19741 0.88759 0.84671 0.87738 1.90616 1.13167 1.86415 1.56137 1.21795 0.89322 0.83683 1.06345 1.46146 1.41387 1.31489 1.06783 1.20376 0.80748 0.80417 0.86320 1.91161 1.61613 1.69840 1.12839 1.85541 1.54983 1.48737 1.15155 1.74102 1.20492 1.19500 0.92164 1.22364 0.93438 0.91938 0.90579 1.17637 0.99090 0.96010 0.86183 1.22184 0.99349 1.00868 0.92861 1.22758 0.94992 0.93101 0.94852 1.67646 1.07463 1.04986 1.38145 1.22807 0.95739 0.98185 0.87851 1.22659 0.98632 0.95687 0.99413 0.91416 0.77080 0.86623 0.85987 0.83431 0.81828 0.81489 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.08 13.05 55.50 0.72 -21.36 16 2 C 0.03 0.74 5.50 -17.47 -0.10 0.64 16 3 Si 0.93 19.69 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.30 -7.77 9.68 -14.93 -0.14 -7.92 16 8 H 0.11 2.92 7.16 -52.48 -0.38 2.54 16 9 N -0.54 -12.16 5.29 -10.96 -0.06 -12.22 16 10 C 0.41 8.63 6.43 -10.99 -0.07 8.56 16 11 O -0.58 -14.78 16.01 5.54 0.09 -14.69 16 12 C 0.11 1.78 5.83 -5.20 -0.03 1.75 16 13 N -0.52 -8.87 2.35 -120.62 -0.28 -9.15 16 14 C 0.57 10.53 9.34 54.33 0.51 11.03 16 15 O -0.48 -9.88 17.99 -18.89 -0.34 -10.22 16 16 O 0.00 -0.02 11.25 -7.58 -0.09 -0.10 16 17 N -0.33 -5.21 11.83 32.10 0.38 -4.83 16 18 C 0.28 4.47 7.81 -153.61 -1.20 3.27 16 19 C 0.02 0.29 5.91 -104.64 -0.62 -0.33 16 20 C -0.13 -1.46 9.79 -39.07 -0.38 -1.84 16 21 C 0.10 1.03 11.17 -17.60 -0.20 0.84 16 22 N -0.47 -5.88 10.34 -13.33 -0.14 -6.02 16 23 C 0.11 1.38 11.17 -17.60 -0.20 1.18 16 24 C -0.14 -1.95 9.11 -39.07 -0.36 -2.31 16 25 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 26 H 0.40 8.22 7.90 -40.82 -0.32 7.90 16 27 H 0.12 1.39 5.96 -51.93 -0.31 1.08 16 28 H 0.12 1.74 8.13 -51.93 -0.42 1.32 16 29 H 0.15 1.37 7.98 -52.48 -0.42 0.95 16 30 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.15 2.14 3.45 -52.49 -0.18 1.96 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -31.68 295.72 -5.07 -36.75 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -2.01 Total: 7.81 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: -2.78 Total: 14.88 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.62 Total: -53.57 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.34 Total: -25.00 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.68 -5.07 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343949708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.552 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds