Wall clock time and date at job start Tue Mar 31 2020 03:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99968 * 2 1 4 4 C 1.50701 * 109.47008 * 275.55593 * 3 2 1 5 5 H 1.08000 * 120.00278 * 4.95943 * 4 3 2 6 6 C 1.37878 * 120.00118 * 184.95606 * 4 3 2 7 7 N 1.31508 * 120.00111 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 119.99736 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47426 * 89.99750 * 8 6 4 10 10 H 1.48500 * 109.47338 * 209.99910 * 8 6 4 11 11 H 1.48500 * 109.47402 * 329.99817 * 8 6 4 12 12 S 1.65596 * 119.99887 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39970 * 159.52218 * 12 2 1 14 14 O 1.42098 * 106.40607 * 26.59855 * 12 2 1 15 15 N 1.65603 * 107.21707 * 273.05941 * 12 2 1 16 16 C 1.46502 * 120.00077 * 62.73336 * 15 12 2 17 17 C 1.52993 * 109.47232 * 164.42120 * 16 15 12 18 18 N 1.46502 * 109.47232 * 179.97438 * 17 16 15 19 19 N 1.28879 * 125.44531 * 90.00372 * 18 17 16 20 20 C 1.31044 * 107.91706 * 180.02562 * 19 18 17 21 21 N 1.33313 * 106.89747 * 359.97438 * 20 19 18 22 22 N 1.28777 * 125.45194 * 269.69487 * 18 17 16 23 23 H 1.08997 * 109.46979 * 269.99978 * 1 2 3 24 24 H 1.09005 * 109.46976 * 30.00127 * 1 2 3 25 25 H 1.08996 * 109.47169 * 150.00113 * 1 2 3 26 26 H 1.09001 * 109.46807 * 35.55421 * 3 2 1 27 27 H 1.08999 * 109.47041 * 155.55812 * 3 2 1 28 28 H 0.97004 * 120.00086 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00067 * 242.73799 * 15 12 2 30 30 H 1.09003 * 109.46547 * 44.42478 * 16 15 12 31 31 H 1.08996 * 109.46948 * 284.42693 * 16 15 12 32 32 H 1.09002 * 109.47224 * 300.00205 * 17 16 15 33 33 H 1.09004 * 109.47198 * 59.99898 * 17 16 15 34 34 H 1.07993 * 126.55095 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3296 1.7726 -1.4142 5 1 1.8419 1.2476 -2.2222 6 6 3.0729 2.9038 -1.6764 7 7 3.1885 3.3431 -2.9106 8 14 3.9169 3.8115 -0.2789 9 1 5.2824 3.2610 -0.0843 10 1 4.0082 5.2561 -0.6107 11 1 3.1312 3.6391 0.9693 12 16 2.2930 -1.4341 -0.0006 13 8 3.5995 -1.1429 -0.4774 14 8 1.4381 -2.3908 -0.6114 15 7 2.4649 -1.9015 1.5787 16 6 1.2802 -2.1952 2.3889 17 6 1.6988 -2.9601 3.6460 18 7 0.5141 -3.2532 4.4565 19 7 -0.2152 -4.3113 4.3588 20 6 -1.1791 -4.2195 5.2419 21 7 -1.0085 -3.0632 5.8829 22 7 0.0382 -2.4975 5.3843 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6551 2.0014 0.5976 27 1 3.1894 1.1156 0.4252 28 1 3.7118 4.1388 -3.0951 29 1 3.3501 -1.9809 1.9674 30 1 0.5848 -2.8021 1.8090 31 1 0.7959 -1.2618 2.6758 32 1 2.1831 -3.8935 3.3590 33 1 2.3942 -2.3533 4.2259 34 1 -1.9616 -4.9428 5.4174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351601217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:12 Heat of formation + Delta-G solvation = 67.064621 kcal Electronic energy + Delta-G solvation = -21255.317693 eV Core-core repulsion = 17775.318705 eV Total energy + Delta-G solvation = -3479.998988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.63743 -37.17159 -36.71300 -35.75602 -35.39389 -34.46347 -33.30873 -32.44980 -29.64879 -28.48410 -25.31025 -24.82263 -24.25003 -22.53907 -21.99795 -19.47861 -18.08210 -17.76258 -17.24004 -17.12615 -16.58995 -16.30502 -15.82442 -15.22506 -15.04421 -14.29681 -14.10907 -13.77102 -13.28202 -13.20517 -12.79726 -12.58103 -12.41840 -12.15745 -11.89146 -11.85943 -11.63426 -11.41629 -11.33286 -11.27576 -11.25411 -10.76328 -10.68786 -10.53931 -10.34156 -9.79111 -9.60509 -8.64430 -8.25697 -6.13729 -4.14054 0.79380 0.97287 1.58536 1.93942 3.20145 3.26318 3.29109 3.32776 3.73958 3.83433 4.01681 4.07186 4.33791 4.47752 4.56811 4.76323 5.07705 5.09279 5.17052 5.35283 5.38964 5.46222 5.54787 5.79459 5.82114 6.09332 6.35132 6.62146 6.73613 6.97730 7.27507 7.51094 8.05271 8.42296 8.90337 9.45054 10.99634 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.004142 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.518189 B = 6758.832381 C = 7160.092885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.988 5.988 3 C 0.227 3.773 4 C -0.537 4.537 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 S 2.783 3.217 13 O -0.954 6.954 14 O -0.987 6.987 15 N -1.132 6.132 16 C 0.108 3.892 17 C 0.122 3.878 18 N -0.137 5.137 19 N -0.306 5.306 20 C 0.143 3.857 21 N -0.287 5.287 22 N -0.056 5.056 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.266 0.734 29 H 0.416 0.584 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -13.211 16.130 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.830 5.830 3 C 0.104 3.896 4 C -0.576 4.576 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.790 3.210 13 O -0.938 6.938 14 O -0.970 6.970 15 N -0.891 5.891 16 C -0.021 4.021 17 C 0.000 4.000 18 N -0.050 5.050 19 N -0.156 5.156 20 C -0.160 4.160 21 N -0.158 5.158 22 N -0.050 5.050 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.249 0.751 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.463 -12.967 15.229 20.494 hybrid contribution 0.403 0.279 1.019 1.131 sum -4.060 -12.688 16.248 21.012 Atomic orbital electron populations 1.21443 0.79631 1.04251 1.00194 1.57365 1.14531 1.22534 1.88593 1.19466 0.90912 0.80461 0.98750 1.21364 1.32697 1.11300 0.92264 0.90361 1.24876 0.95599 0.96877 0.95535 1.69891 1.40439 1.23966 1.18793 0.86905 0.80860 0.79411 0.82844 1.19704 1.20905 1.18983 1.02046 0.73542 0.72956 0.72455 1.93668 1.38566 1.84469 1.77082 1.93554 1.68823 1.60881 1.73776 1.56328 1.13179 1.86106 1.33505 1.21420 0.88870 1.00439 0.91378 1.22505 0.81737 1.04419 0.91298 1.50144 1.21353 1.10071 1.23424 1.74788 1.06388 1.10286 1.24119 1.27430 0.99198 0.97122 0.92275 1.75923 1.09333 1.07422 1.23147 1.79062 1.05921 1.18866 1.01110 0.94292 0.89813 0.91213 0.94848 0.95013 0.92425 0.75094 0.89051 0.90254 0.85611 0.85542 0.74755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.69 59.85 0.64 2.07 16 2 N -0.99 -18.63 3.23 -123.05 -0.40 -19.03 16 3 C 0.23 5.11 4.16 -5.19 -0.02 5.09 16 4 C -0.54 -14.94 9.93 -34.44 -0.34 -15.28 16 5 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 8 Si 0.87 20.66 27.37 -169.99 -4.65 16.01 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -5.79 6.69 56.52 0.38 -5.41 16 12 S 2.78 49.01 6.09 -107.50 -0.65 48.35 16 13 O -0.95 -20.74 16.99 -57.17 -0.97 -21.71 16 14 O -0.99 -18.94 16.34 -57.17 -0.93 -19.88 16 15 N -1.13 -12.72 6.05 -10.62 -0.06 -12.78 16 16 C 0.11 1.02 6.58 -4.04 -0.03 0.99 16 17 C 0.12 0.85 6.75 -4.04 -0.03 0.82 16 18 N -0.14 -1.32 4.00 -10.68 -0.04 -1.36 16 19 N -0.31 -3.01 12.13 29.34 0.36 -2.66 16 20 C 0.14 1.22 13.26 -91.58 -1.21 0.01 16 21 N -0.29 -3.20 12.50 29.33 0.37 -2.84 16 22 N -0.06 -0.63 13.25 60.35 0.80 0.17 16 23 H 0.04 0.48 8.06 -51.93 -0.42 0.07 16 24 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.07 1.05 7.05 -51.93 -0.37 0.69 16 26 H 0.03 0.71 7.51 -51.93 -0.39 0.32 16 27 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.42 3.49 8.66 -34.47 -0.30 3.20 16 30 H 0.09 0.94 7.79 -51.93 -0.40 0.53 16 31 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.24 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -37.07 312.22 -5.72 -42.79 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.91 Total: -1.18 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.09 Total: -4.28 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: 1.79 Total: -64.80 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.91 Total: -41.59 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.65 Total: 16.01 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.65 Total: 48.35 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.07 -5.72 -42.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351601217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.851 kcal (2) G-P(sol) polarization free energy of solvation -37.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds