Wall clock time and date at job start Tue Mar 31 2020 03:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99968 * 2 1 4 4 C 1.50701 * 109.47008 * 275.55593 * 3 2 1 5 5 H 1.08000 * 120.00278 * 4.95943 * 4 3 2 6 6 C 1.37878 * 120.00118 * 184.95606 * 4 3 2 7 7 N 1.31508 * 120.00111 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 119.99736 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47426 * 89.99750 * 8 6 4 10 10 H 1.48500 * 109.47338 * 209.99910 * 8 6 4 11 11 H 1.48500 * 109.47402 * 329.99817 * 8 6 4 12 12 S 1.65596 * 119.99887 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39970 * 159.52218 * 12 2 1 14 14 O 1.42098 * 106.40607 * 26.59855 * 12 2 1 15 15 N 1.65603 * 107.21707 * 273.05941 * 12 2 1 16 16 C 1.46502 * 120.00077 * 62.73336 * 15 12 2 17 17 C 1.52993 * 109.47232 * 164.42120 * 16 15 12 18 18 N 1.46502 * 109.47232 * 179.97438 * 17 16 15 19 19 N 1.28879 * 125.44531 * 90.00372 * 18 17 16 20 20 C 1.31044 * 107.91706 * 180.02562 * 19 18 17 21 21 N 1.33313 * 106.89747 * 359.97438 * 20 19 18 22 22 N 1.28777 * 125.45194 * 269.69487 * 18 17 16 23 23 H 1.08997 * 109.46979 * 269.99978 * 1 2 3 24 24 H 1.09005 * 109.46976 * 30.00127 * 1 2 3 25 25 H 1.08996 * 109.47169 * 150.00113 * 1 2 3 26 26 H 1.09001 * 109.46807 * 35.55421 * 3 2 1 27 27 H 1.08999 * 109.47041 * 155.55812 * 3 2 1 28 28 H 0.97004 * 120.00086 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00067 * 242.73799 * 15 12 2 30 30 H 1.09003 * 109.46547 * 44.42478 * 16 15 12 31 31 H 1.08996 * 109.46948 * 284.42693 * 16 15 12 32 32 H 1.09002 * 109.47224 * 300.00205 * 17 16 15 33 33 H 1.09004 * 109.47198 * 59.99898 * 17 16 15 34 34 H 1.07993 * 126.55095 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3296 1.7726 -1.4142 5 1 1.8419 1.2476 -2.2222 6 6 3.0729 2.9038 -1.6764 7 7 3.1885 3.3431 -2.9106 8 14 3.9169 3.8115 -0.2789 9 1 5.2824 3.2610 -0.0843 10 1 4.0082 5.2561 -0.6107 11 1 3.1312 3.6391 0.9693 12 16 2.2930 -1.4341 -0.0006 13 8 3.5995 -1.1429 -0.4774 14 8 1.4381 -2.3908 -0.6114 15 7 2.4649 -1.9015 1.5787 16 6 1.2802 -2.1952 2.3889 17 6 1.6988 -2.9601 3.6460 18 7 0.5141 -3.2532 4.4565 19 7 -0.2152 -4.3113 4.3588 20 6 -1.1791 -4.2195 5.2419 21 7 -1.0085 -3.0632 5.8829 22 7 0.0382 -2.4975 5.3843 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6551 2.0014 0.5976 27 1 3.1894 1.1156 0.4252 28 1 3.7118 4.1388 -3.0951 29 1 3.3501 -1.9809 1.9674 30 1 0.5848 -2.8021 1.8090 31 1 0.7959 -1.2618 2.6758 32 1 2.1831 -3.8935 3.3590 33 1 2.3942 -2.3533 4.2259 34 1 -1.9616 -4.9428 5.4174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351601217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:12 Heat of formation + Delta-G solvation = 35.263152 kcal Electronic energy + Delta-G solvation = -21256.696709 eV Core-core repulsion = 17775.318705 eV Total energy + Delta-G solvation = -3481.378004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.32884 -38.43316 -37.76074 -37.31500 -36.93093 -35.28218 -34.51444 -34.01934 -30.40045 -30.29522 -26.85143 -25.61958 -24.92206 -23.86997 -23.19225 -20.67880 -19.24941 -18.98685 -18.58917 -18.49458 -17.86795 -17.39568 -16.68294 -16.46642 -16.02616 -15.86502 -15.26492 -14.84534 -14.65064 -14.51612 -14.11080 -13.99717 -13.45631 -13.38282 -13.19574 -13.16622 -13.13313 -13.00786 -12.76661 -12.37804 -12.25646 -12.04629 -12.00197 -11.98349 -11.70666 -11.38211 -10.78707 -10.72474 -9.83064 -8.29213 -6.35623 -0.49880 0.18941 0.93316 1.27874 1.38426 1.42179 1.50499 1.97383 2.36165 2.57193 3.05385 3.20078 3.25742 3.45125 3.51045 3.85461 3.95571 4.06903 4.28161 4.42261 4.58321 4.62975 4.68920 4.79079 4.86223 4.86750 5.03752 5.17299 5.30415 5.47539 5.66324 6.02451 6.29468 6.68230 7.28096 7.35155 8.88248 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.004142 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.518189 B = 6758.832381 C = 7160.092885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.998 5.998 3 C 0.234 3.766 4 C -0.548 4.548 5 H 0.029 0.971 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.944 3.056 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.227 1.227 12 S 2.801 3.199 13 O -1.001 7.001 14 O -1.008 7.008 15 N -1.108 6.108 16 C 0.104 3.896 17 C 0.120 3.880 18 N -0.133 5.133 19 N -0.322 5.322 20 C 0.149 3.851 21 N -0.314 5.314 22 N -0.074 5.074 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.268 0.732 29 H 0.432 0.568 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 -13.779 19.380 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.839 5.839 3 C 0.109 3.891 4 C -0.587 4.587 5 H 0.047 0.953 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.766 3.234 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.150 1.150 12 S 2.809 3.191 13 O -0.985 6.985 14 O -0.991 6.991 15 N -0.873 5.873 16 C -0.024 4.024 17 C -0.001 4.001 18 N -0.047 5.047 19 N -0.172 5.172 20 C -0.153 4.153 21 N -0.184 5.184 22 N -0.068 5.068 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.270 0.730 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -4.508 -13.557 18.496 23.371 hybrid contribution 0.315 0.317 -0.047 0.449 sum -4.193 -13.240 18.449 23.092 Atomic orbital electron populations 1.21633 0.78020 1.03710 1.02656 1.57299 1.15725 1.21609 1.89315 1.19243 0.92214 0.82260 0.95371 1.21744 1.31861 1.11070 0.94050 0.95293 1.25964 0.96516 0.98059 0.98621 1.70072 1.42090 1.24968 1.21751 0.85778 0.79834 0.77525 0.80289 1.19281 1.20697 1.14960 1.01180 0.72096 0.72446 0.73414 1.93604 1.40774 1.85045 1.79043 1.93526 1.69126 1.61195 1.75236 1.55571 1.14968 1.85137 1.31670 1.21544 0.87752 1.01156 0.91994 1.22707 0.81312 1.05731 0.90349 1.50322 1.21558 1.09750 1.23076 1.74801 1.06957 1.10658 1.24775 1.28210 0.99303 0.96841 0.90986 1.75903 1.09764 1.08603 1.24164 1.79014 1.06407 1.19482 1.01889 0.90203 0.91214 0.91032 0.92617 0.94068 0.92350 0.73005 0.89851 0.89603 0.83569 0.82845 0.71127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.56 10.69 127.77 1.37 3.93 16 2 N -1.00 -36.55 3.23 -543.21 -1.75 -38.31 16 3 C 0.23 10.17 4.16 85.63 0.36 10.52 16 4 C -0.55 -31.11 9.93 25.60 0.25 -30.86 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.36 5.47 84.66 0.46 0.82 16 7 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 8 Si 0.94 41.77 27.37 68.60 1.88 43.65 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.23 -8.60 6.69 99.48 0.67 -7.93 16 12 S 2.80 96.04 6.09 -56.49 -0.34 95.70 16 13 O -1.00 -43.43 16.99 -128.00 -2.17 -45.61 16 14 O -1.01 -38.18 16.34 -128.00 -2.09 -40.27 16 15 N -1.11 -21.95 6.05 -187.50 -1.13 -23.08 16 16 C 0.10 1.64 6.58 86.38 0.57 2.21 16 17 C 0.12 1.25 6.75 86.38 0.58 1.84 16 18 N -0.13 -2.21 4.00 -187.69 -0.75 -2.96 16 19 N -0.32 -5.53 12.13 -61.10 -0.74 -6.27 16 20 C 0.15 2.18 13.26 180.68 2.40 4.58 16 21 N -0.31 -6.38 12.50 -61.11 -0.76 -7.14 16 22 N -0.07 -1.51 13.25 37.02 0.49 -1.02 16 23 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 24 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 25 H 0.07 2.11 7.05 -2.39 -0.02 2.09 16 26 H 0.06 2.20 7.51 -2.39 -0.02 2.18 16 27 H 0.04 1.73 6.66 -2.39 -0.02 1.72 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.43 5.90 8.66 -96.74 -0.84 5.06 16 30 H 0.08 1.50 7.79 -2.39 -0.02 1.48 16 31 H 0.09 1.30 8.06 -2.39 -0.02 1.28 16 32 H 0.15 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.27 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -83.65 312.22 -0.84 -84.49 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.26 Total: 6.98 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.99 Total: -6.96 kcal Atomic # 7 Polarization: -133.63 SS G_CDS: -4.35 Total: -137.99 kcal Atomic # 8 Polarization: -81.61 SS G_CDS: -4.27 Total: -85.88 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.65 kcal Atomic # 16 Polarization: 96.04 SS G_CDS: -0.34 Total: 95.70 kcal Total: -83.65 -0.84 -84.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351601217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.757 kcal (2) G-P(sol) polarization free energy of solvation -83.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds