Wall clock time and date at job start Tue Mar 31 2020 03:50:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86799 * 120.00200 * 2 1
4 4 H 1.48506 * 109.47103 * 270.00192 * 3 2 1
5 5 H 1.48499 * 109.47067 * 29.99981 * 3 2 1
6 6 H 1.48500 * 109.47200 * 150.00260 * 3 2 1
7 7 C 1.37881 * 119.99821 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99837 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99744 * 359.97438 * 7 2 1
10 10 N 1.46499 * 109.46740 * 180.02562 * 9 7 2
11 11 C 1.34779 * 120.00289 * 179.97438 * 10 9 7
12 12 O 1.21366 * 119.99474 * 0.02562 * 11 10 9
13 13 C 1.49332 * 120.00375 * 179.97438 * 11 10 9
14 14 O 1.21384 * 119.99944 * 0.02562 * 13 11 10
15 15 N 1.34779 * 119.99776 * 179.97438 * 13 11 10
16 16 C 1.39868 * 119.99572 * 184.64051 * 15 13 11
17 17 C 1.38937 * 120.19270 * 144.94096 * 16 15 13
18 18 C 1.37828 * 120.27342 * 180.15204 * 17 16 15
19 19 C 1.39334 * 120.34108 * 0.02562 * 18 17 16
20 20 C 1.39004 * 118.98307 * 359.60631 * 19 18 17
21 21 C 1.37596 * 120.84480 * 0.57350 * 20 19 18
22 22 C 1.51660 * 106.98601 * 180.56901 * 20 19 18
23 23 C 1.54701 * 101.94763 * 15.72071 * 22 20 19
24 24 O 1.36221 * 129.78248 * 179.56970 * 19 18 17
25 25 H 0.97004 * 120.00077 * 359.97438 * 1 2 3
26 26 H 1.08992 * 109.47237 * 60.00646 * 9 7 2
27 27 H 1.08998 * 109.47179 * 299.99664 * 9 7 2
28 28 H 0.97004 * 120.00461 * 0.02562 * 10 9 7
29 29 H 0.96996 * 120.00252 * 4.64541 * 15 13 11
30 30 H 1.08000 * 119.86874 * 0.13553 * 17 16 15
31 31 H 1.08005 * 119.83498 * 180.02562 * 18 17 16
32 32 H 1.08007 * 120.01051 * 179.64623 * 21 20 19
33 33 H 1.09002 * 110.93666 * 257.54989 * 22 20 19
34 34 H 1.09006 * 110.94068 * 133.90077 * 22 20 19
35 35 H 1.09005 * 110.74056 * 92.92133 * 23 22 20
36 36 H 1.08994 * 110.74754 * 216.07880 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6526 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2028 -3.6127 -0.0005
11 6 1.7536 -4.8834 0.0000
12 8 0.5604 -5.1051 0.0000
13 6 2.7240 -6.0185 -0.0006
14 8 3.9174 -5.7967 -0.0011
15 7 2.2747 -7.2892 0.0005
16 6 3.1799 -8.3509 0.0979
17 6 2.8347 -9.5017 0.7955
18 6 3.7266 -10.5477 0.8953
19 6 4.9826 -10.4610 0.2983
20 6 5.3164 -9.3089 -0.4041
21 6 4.4301 -8.2611 -0.5029
22 6 6.7191 -9.5103 -0.9444
23 6 6.9058 -11.0381 -0.7896
24 8 6.0039 -11.3623 0.2818
25 1 -0.4850 0.8401 0.0004
26 1 0.6240 -2.5567 -0.8903
27 1 0.6246 -2.5571 0.8897
28 1 3.1566 -3.4355 -0.0002
29 1 1.3236 -7.4673 -0.0665
30 1 1.8634 -9.5770 1.2619
31 1 3.4507 -11.4392 1.4390
32 1 4.7056 -7.3699 -1.0472
33 1 7.4492 -8.9659 -0.3453
34 1 6.7794 -9.2144 -1.9919
35 1 6.6201 -11.5566 -1.7049
36 1 7.9341 -11.2759 -0.5178
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000427865679.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:50:40
Heat of formation + Delta-G solvation = -71.967027 kcal
Electronic energy + Delta-G solvation = -21677.424986 eV
Core-core repulsion = 18127.200774 eV
Total energy + Delta-G solvation = -3550.224212 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 290.110 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.39849 -40.44478 -38.49450 -37.30839 -34.91921 -34.05145 -32.89331 -32.39176
-29.61411 -29.23560 -27.71299 -24.96574 -23.78953 -22.67783 -22.06973 -21.39368
-19.96225 -18.71630 -17.70650 -17.27594 -16.83768 -16.32357 -16.23265 -15.70721
-15.38174 -15.01403 -14.34886 -14.28131 -14.13204 -13.64208 -13.47893 -13.23776
-13.15797 -12.85385 -12.72688 -12.08657 -12.02288 -11.94714 -11.53889 -11.38339
-11.07991 -10.95494 -10.93508 -10.35071 -9.95563 -9.50934 -9.21149 -9.02831
-8.85691 -8.14879 -7.89668 -6.24385 -4.31858 0.94436 1.13946 1.81184
2.61221 3.02338 3.22020 3.28449 3.31634 3.43315 3.66889 3.98447
4.19406 4.29508 4.38129 4.65711 4.72517 4.92808 5.01538 5.03001
5.10964 5.12473 5.39300 5.44301 5.50136 5.64197 5.79047 6.09684
6.15476 6.21363 6.48825 6.93417 7.00122 7.05555 7.19374 7.33426
7.52730 7.82481 7.85507 8.34480 8.52985 8.79851 9.34554 10.85689
Molecular weight = 290.11amu
Principal moments of inertia in cm(-1)
A = 0.033346 B = 0.002805 C = 0.002620
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.486239 B = 9981.270329 C =10683.340575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.065 3.935
3 Si 0.907 3.093
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.271 1.271
7 C -0.547 4.547
8 H 0.066 0.934
9 C 0.246 3.754
10 N -0.670 5.670
11 C 0.492 3.508
12 O -0.536 6.536
13 C 0.509 3.491
14 O -0.507 6.507
15 N -0.647 5.647
16 C 0.120 3.880
17 C -0.106 4.106
18 C -0.119 4.119
19 C 0.087 3.913
20 C -0.157 4.157
21 C -0.070 4.070
22 C -0.110 4.110
23 C 0.052 3.948
24 O -0.306 6.306
25 H 0.267 0.733
26 H 0.035 0.965
27 H 0.035 0.965
28 H 0.404 0.596
29 H 0.424 0.576
30 H 0.138 0.862
31 H 0.133 0.867
32 H 0.144 0.856
33 H 0.093 0.907
34 H 0.093 0.907
35 H 0.076 0.924
36 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.358 -21.309 -1.485 23.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.139 4.139
3 Si 0.734 3.266
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.196 1.196
7 C -0.585 4.585
8 H 0.085 0.915
9 C 0.126 3.874
10 N -0.319 5.319
11 C 0.270 3.730
12 O -0.415 6.415
13 C 0.292 3.708
14 O -0.381 6.381
15 N -0.295 5.295
16 C 0.026 3.974
17 C -0.126 4.126
18 C -0.138 4.138
19 C 0.042 3.958
20 C -0.158 4.158
21 C -0.090 4.090
22 C -0.147 4.147
23 C -0.023 4.023
24 O -0.220 6.220
25 H 0.077 0.923
26 H 0.053 0.947
27 H 0.053 0.947
28 H 0.239 0.761
29 H 0.262 0.738
30 H 0.156 0.844
31 H 0.151 0.849
32 H 0.162 0.838
33 H 0.111 0.889
34 H 0.111 0.889
35 H 0.094 0.906
36 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 10.207 -21.244 -1.336 23.607
hybrid contribution 0.437 1.043 -0.119 1.137
sum 10.643 -20.201 -1.455 22.880
Atomic orbital electron populations
1.69962 1.06124 1.27544 1.48593 1.24940 0.94953 0.99536 0.94444
0.86360 0.79665 0.82295 0.78320 1.20364 1.20937 1.19606 1.21201
0.93510 0.90093 1.53730 0.91543 1.19355 0.88134 0.81446 0.98423
1.46428 1.12728 1.04984 1.67761 1.19659 0.88074 0.84507 0.80761
1.90739 1.15732 1.84544 1.50445 1.20907 0.89307 0.84230 0.76379
1.90723 1.16446 1.84590 1.46300 1.43130 1.11136 1.03859 1.71351
1.17524 0.91559 0.88733 0.99588 1.20656 1.00537 0.92632 0.98790
1.19974 0.89933 1.00149 1.03741 1.19592 0.89346 0.88710 0.98177
1.20600 0.96554 0.94766 1.03896 1.20406 0.91988 0.98328 0.98307
1.21803 0.93715 0.96222 1.02963 1.23808 0.94221 0.94453 0.89780
1.86818 1.33652 1.50938 1.50634 0.92297 0.94667 0.94683 0.76072
0.73810 0.84392 0.84926 0.83821 0.88908 0.88897 0.90581 0.87656
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16
2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16
3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16
4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
7 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16
8 H 0.07 1.68 7.60 -52.49 -0.40 1.28 16
9 C 0.25 6.31 5.43 -5.19 -0.03 6.28 16
10 N -0.67 -14.23 5.54 -61.95 -0.34 -14.57 16
11 C 0.49 9.65 7.89 -11.64 -0.09 9.56 16
12 O -0.54 -11.59 16.48 5.48 0.09 -11.50 16
13 C 0.51 8.43 7.73 -11.64 -0.09 8.34 16
14 O -0.51 -8.99 13.92 5.47 0.08 -8.92 16
15 N -0.65 -8.72 5.33 -10.25 -0.05 -8.77 16
16 C 0.12 1.53 6.30 -83.65 -0.53 1.00 16
17 C -0.11 -1.11 9.94 -39.47 -0.39 -1.50 16
18 C -0.12 -1.23 10.06 -39.32 -0.40 -1.63 16
19 C 0.09 1.01 7.04 -38.89 -0.27 0.73 16
20 C -0.16 -1.82 6.27 -104.10 -0.65 -2.48 16
21 C -0.07 -0.92 8.68 -39.54 -0.34 -1.27 16
22 C -0.11 -0.92 7.11 -26.52 -0.19 -1.11 16
23 C 0.05 0.38 8.01 38.05 0.30 0.69 16
24 O -0.31 -3.32 11.10 -20.45 -0.23 -3.55 16
25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
27 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
28 H 0.40 7.96 7.79 -40.82 -0.32 7.64 16
29 H 0.42 4.97 8.30 -40.82 -0.34 4.63 16
30 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16
31 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16
32 H 0.14 2.04 6.24 -52.48 -0.33 1.71 16
33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16
34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16
LS Contribution 318.92 15.07 4.81 4.81
Total: -1.00 -31.51 318.92 -6.93 -38.44
By element:
Atomic # 1 Polarization: 11.66 SS G_CDS: -3.90 Total: 7.76 kcal
Atomic # 6 Polarization: 8.47 SS G_CDS: -3.10 Total: 5.37 kcal
Atomic # 7 Polarization: -48.33 SS G_CDS: 0.34 Total: -47.99 kcal
Atomic # 8 Polarization: -23.91 SS G_CDS: -0.06 Total: -23.97 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -31.51 -6.93 -38.44 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427865679.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.526 kcal
(2) G-P(sol) polarization free energy of solvation -31.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.035 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.967 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds