Wall clock time and date at job start Tue Mar 31 2020 03:50:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86799 * 120.00200 * 2 1
4 4 H 1.48506 * 109.47103 * 270.00192 * 3 2 1
5 5 H 1.48499 * 109.47067 * 29.99981 * 3 2 1
6 6 H 1.48500 * 109.47200 * 150.00260 * 3 2 1
7 7 C 1.37881 * 119.99821 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99837 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99744 * 359.97438 * 7 2 1
10 10 N 1.46499 * 109.46740 * 180.02562 * 9 7 2
11 11 C 1.34779 * 120.00289 * 179.97438 * 10 9 7
12 12 O 1.21366 * 119.99474 * 0.02562 * 11 10 9
13 13 C 1.49332 * 120.00375 * 179.97438 * 11 10 9
14 14 O 1.21384 * 119.99944 * 0.02562 * 13 11 10
15 15 N 1.34779 * 119.99776 * 179.97438 * 13 11 10
16 16 C 1.39868 * 119.99572 * 184.64051 * 15 13 11
17 17 C 1.38937 * 120.19270 * 144.94096 * 16 15 13
18 18 C 1.37828 * 120.27342 * 180.15204 * 17 16 15
19 19 C 1.39334 * 120.34108 * 0.02562 * 18 17 16
20 20 C 1.39004 * 118.98307 * 359.60631 * 19 18 17
21 21 C 1.37596 * 120.84480 * 0.57350 * 20 19 18
22 22 C 1.51660 * 106.98601 * 180.56901 * 20 19 18
23 23 C 1.54701 * 101.94763 * 15.72071 * 22 20 19
24 24 O 1.36221 * 129.78248 * 179.56970 * 19 18 17
25 25 H 0.97004 * 120.00077 * 359.97438 * 1 2 3
26 26 H 1.08992 * 109.47237 * 60.00646 * 9 7 2
27 27 H 1.08998 * 109.47179 * 299.99664 * 9 7 2
28 28 H 0.97004 * 120.00461 * 0.02562 * 10 9 7
29 29 H 0.96996 * 120.00252 * 4.64541 * 15 13 11
30 30 H 1.08000 * 119.86874 * 0.13553 * 17 16 15
31 31 H 1.08005 * 119.83498 * 180.02562 * 18 17 16
32 32 H 1.08007 * 120.01051 * 179.64623 * 21 20 19
33 33 H 1.09002 * 110.93666 * 257.54989 * 22 20 19
34 34 H 1.09006 * 110.94068 * 133.90077 * 22 20 19
35 35 H 1.09005 * 110.74056 * 92.92133 * 23 22 20
36 36 H 1.08994 * 110.74754 * 216.07880 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6526 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2028 -3.6127 -0.0005
11 6 1.7536 -4.8834 0.0000
12 8 0.5604 -5.1051 0.0000
13 6 2.7240 -6.0185 -0.0006
14 8 3.9174 -5.7967 -0.0011
15 7 2.2747 -7.2892 0.0005
16 6 3.1799 -8.3509 0.0979
17 6 2.8347 -9.5017 0.7955
18 6 3.7266 -10.5477 0.8953
19 6 4.9826 -10.4610 0.2983
20 6 5.3164 -9.3089 -0.4041
21 6 4.4301 -8.2611 -0.5029
22 6 6.7191 -9.5103 -0.9444
23 6 6.9058 -11.0381 -0.7896
24 8 6.0039 -11.3623 0.2818
25 1 -0.4850 0.8401 0.0004
26 1 0.6240 -2.5567 -0.8903
27 1 0.6246 -2.5571 0.8897
28 1 3.1566 -3.4355 -0.0002
29 1 1.3236 -7.4673 -0.0665
30 1 1.8634 -9.5770 1.2619
31 1 3.4507 -11.4392 1.4390
32 1 4.7056 -7.3699 -1.0472
33 1 7.4492 -8.9659 -0.3453
34 1 6.7794 -9.2144 -1.9919
35 1 6.6201 -11.5566 -1.7049
36 1 7.9341 -11.2759 -0.5178
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000427865679.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:50:39
Heat of formation + Delta-G solvation = -94.899880 kcal
Electronic energy + Delta-G solvation = -21678.419429 eV
Core-core repulsion = 18127.200774 eV
Total energy + Delta-G solvation = -3551.218655 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 290.110 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.34529 -41.65801 -39.94254 -38.41502 -36.52993 -35.44851 -34.36118 -33.64688
-30.53954 -30.14141 -29.57584 -26.45930 -24.84938 -24.03134 -23.04318 -22.50574
-21.45125 -20.17776 -18.63494 -18.41720 -18.21062 -17.59515 -17.25689 -17.07895
-16.89258 -16.64889 -15.93212 -15.46880 -15.19075 -14.96413 -14.68367 -14.24834
-14.08493 -13.98759 -13.90759 -13.66824 -13.58774 -13.02068 -12.79592 -12.73516
-12.62990 -12.33718 -12.22887 -11.86643 -11.53841 -10.93884 -10.85194 -10.69928
-10.06928 -9.92785 -8.82082 -8.32174 -6.48305 -0.10706 0.25816 0.51048
1.26016 1.44556 1.45271 1.57257 2.05508 2.29048 2.35907 2.66050
2.69194 3.03336 3.36321 3.50849 3.68570 3.88578 4.13470 4.16466
4.23817 4.48265 4.59225 4.69768 4.85326 4.87426 4.96821 4.99349
5.16637 5.18450 5.23117 5.26004 5.34248 5.49400 5.56200 5.76922
5.94786 6.14826 6.46654 6.57083 6.73005 6.98090 7.24767 8.79490
Molecular weight = 290.11amu
Principal moments of inertia in cm(-1)
A = 0.033346 B = 0.002805 C = 0.002620
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.486239 B = 9981.270329 C =10683.340575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.011 3.989
3 Si 0.982 3.018
4 H -0.270 1.270
5 H -0.281 1.281
6 H -0.260 1.260
7 C -0.562 4.562
8 H 0.080 0.920
9 C 0.263 3.737
10 N -0.672 5.672
11 C 0.495 3.505
12 O -0.556 6.556
13 C 0.519 3.481
14 O -0.519 6.519
15 N -0.628 5.628
16 C 0.095 3.905
17 C -0.095 4.095
18 C -0.120 4.120
19 C 0.081 3.919
20 C -0.170 4.170
21 C -0.087 4.087
22 C -0.111 4.111
23 C 0.050 3.950
24 O -0.319 6.319
25 H 0.271 0.729
26 H 0.006 0.994
27 H 0.006 0.994
28 H 0.413 0.587
29 H 0.432 0.568
30 H 0.165 0.835
31 H 0.158 0.842
32 H 0.127 0.873
33 H 0.096 0.904
34 H 0.106 0.894
35 H 0.091 0.909
36 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.055 -22.550 -1.318 25.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.190 4.190
3 Si 0.805 3.195
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.184 1.184
7 C -0.600 4.600
8 H 0.098 0.902
9 C 0.141 3.859
10 N -0.322 5.322
11 C 0.275 3.725
12 O -0.436 6.436
13 C 0.301 3.699
14 O -0.395 6.395
15 N -0.276 5.276
16 C 0.002 3.998
17 C -0.115 4.115
18 C -0.139 4.139
19 C 0.036 3.964
20 C -0.171 4.171
21 C -0.107 4.107
22 C -0.148 4.148
23 C -0.024 4.024
24 O -0.234 6.234
25 H 0.080 0.920
26 H 0.024 0.976
27 H 0.023 0.977
28 H 0.249 0.751
29 H 0.272 0.728
30 H 0.182 0.818
31 H 0.175 0.825
32 H 0.145 0.855
33 H 0.114 0.886
34 H 0.124 0.876
35 H 0.109 0.891
36 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 11.923 -22.549 -1.175 25.535
hybrid contribution -0.081 1.248 -0.180 1.263
sum 11.842 -21.302 -1.355 24.410
Atomic orbital electron populations
1.70096 1.07975 1.28751 1.49502 1.25958 0.95803 1.03556 0.93670
0.85192 0.78465 0.77166 0.78649 1.19551 1.20648 1.18370 1.21568
0.94274 0.90584 1.53591 0.90245 1.18839 0.88314 0.83071 0.95642
1.46157 1.12446 1.04883 1.68758 1.20162 0.88375 0.84813 0.79193
1.90720 1.17034 1.84993 1.50889 1.20096 0.88187 0.84359 0.77241
1.90729 1.16447 1.84773 1.47537 1.42932 1.11839 1.02936 1.69867
1.17719 0.91544 0.89154 1.01408 1.20919 1.01601 0.91377 0.97563
1.20324 0.89477 1.00832 1.03273 1.19886 0.89922 0.88793 0.97823
1.20904 0.97822 0.94399 1.04016 1.20377 0.92781 0.98433 0.99065
1.21920 0.91937 0.97261 1.03699 1.24097 0.94993 0.93588 0.89687
1.86801 1.33823 1.50873 1.51882 0.92021 0.97587 0.97656 0.75058
0.72835 0.81759 0.82462 0.85499 0.88596 0.87583 0.89059 0.85062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16
2 C 0.01 0.58 5.46 84.66 0.46 1.04 16
3 Si 0.98 42.01 29.54 68.60 2.03 44.03 16
4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16
7 C -0.56 -30.37 9.28 25.60 0.24 -30.13 16
8 H 0.08 3.99 7.60 -2.91 -0.02 3.96 16
9 C 0.26 13.99 5.43 85.63 0.46 14.45 16
10 N -0.67 -29.27 5.54 -468.26 -2.59 -31.87 16
11 C 0.49 19.79 7.89 87.23 0.69 20.48 16
12 O -0.56 -24.64 16.48 -3.30 -0.05 -24.70 16
13 C 0.52 17.24 7.73 87.23 0.67 17.91 16
14 O -0.52 -18.49 13.92 -3.35 -0.05 -18.54 16
15 N -0.63 -16.56 5.33 -304.69 -1.62 -18.18 16
16 C 0.09 2.32 6.30 38.21 0.24 2.56 16
17 C -0.09 -1.78 9.94 22.34 0.22 -1.56 16
18 C -0.12 -2.20 10.06 22.44 0.23 -1.97 16
19 C 0.08 1.73 7.04 22.72 0.16 1.89 16
20 C -0.17 -3.77 6.27 -19.53 -0.12 -3.89 16
21 C -0.09 -2.24 8.68 22.30 0.19 -2.05 16
22 C -0.11 -1.68 7.11 30.73 0.22 -1.46 16
23 C 0.05 0.61 8.01 72.56 0.58 1.19 16
24 O -0.32 -6.21 11.10 -96.07 -1.07 -7.28 16
25 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16
26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16
28 H 0.41 16.46 7.79 -92.71 -0.72 15.74 16
29 H 0.43 9.80 8.30 -92.71 -0.77 9.03 16
30 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16
31 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16
32 H 0.13 3.67 6.24 -2.91 -0.02 3.65 16
33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16
35 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16
36 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16
Total: -1.00 -68.68 318.92 0.83 -67.85
By element:
Atomic # 1 Polarization: 24.40 SS G_CDS: -0.35 Total: 24.06 kcal
Atomic # 6 Polarization: 14.21 SS G_CDS: 4.25 Total: 18.45 kcal
Atomic # 7 Polarization: -99.95 SS G_CDS: -3.93 Total: -103.88 kcal
Atomic # 8 Polarization: -49.34 SS G_CDS: -1.17 Total: -50.51 kcal
Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal
Total: -68.68 0.83 -67.85 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427865679.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.048 kcal
(2) G-P(sol) polarization free energy of solvation -68.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds